MELO3C003451 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003451
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon-derived protein PEG10, putative
Location	chr04: 1240764 .. 1241652 (+)
RNA-Seq Expression	MELO3C003451
Synteny	MELO3C003451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAACGCGAGAAAAACAGGACGGAGCATGAATGTGTGTGTGTATATATATGAACTGCCCAACCCAAAATTTCAAATAACTCGATACTAAAACTGCATTGCAAAAATTTTCTTGTAGTGTTACGACAGATTACCTTCATAATTTCTTTCGATCAGTTGGTTGTAGCAGAAATCATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGTACTCAAAGTCACAATTTACGATCACTATATAATTAATCTATCCTAACTTGTCTATACATATATCGCTCTGGCTTACTTATTTTTTTGATTCGCCATTTTGATAAATTAAAACGTCGATCGATTACCTGTCAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATCCCTTTTTGTTGCCTTCAAATTTGTTTGAGTTCTGATGGAATGATCGATGGTAAGGCTACGGAGTTTGCTTGAGGAAATTAAACAACCCTAACCAGTTCATGAATTACAACACTGGATTCATCGTCGTCTTCCATTGTTGTTTGTAGTTTTAGAGTTCTTAGATTTTGAAGGCTTCAGAGAACTACTTCGTTCCAACTGAGATCGTTTTTTTTCAAGGGGGAAAGAGAAACTTCAATACAATTTGGAAGTGTAATGCTTCGAACGAATTGTTATATTAATAAAAGTTTTTGA

mRNA sequence

TAGAAACGCGAGAAAAACAGGACGGAGCATGAATGTGTGTGTGTATATATATGAACTGCCCAACCCAAAATTTCAAATAACTCGATACTAAAACTGCATTGCAAAAATTTTCTTGTAGTGTTACGACAGATTACCTTCATAATTTCTTTCGATCAGTTGGTTGTAGCAGAAATCATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGATTTTGAAGGCTTCAGAGAACTACTTCGTTCCAACTGAGATCGTTTTTTTTCAAGGGGGAAAGAGAAACTTCAATACAATTTGGAAGTGTAATGCTTCGAACGAATTGTTATATTAATAAAAGTTTTTGA

Coding sequence (CDS)

ATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGATTTTGAAGGCTTCAGAGAACTACTTCGTTCCAACTGAGATCGTTTTTTTTCAAGGGGGAAAGAGAAACTTCAATACAATTTGGAAGTGTAATGCTTCGAACGAATTGTTATATTAA

Protein sequence

MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGDLKIQLARERLRNKRIKLCGLMEFVLQLLLILKASENYFVPTEIVFFQGGKRNFNTIWKCNASNELLY

Homology

[Close]

BLAST of MELO3C003451 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD
Sbjct: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKIQLARERLRNKRIKLCGLMEFVLQLLL++  S
Sbjct: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLS 94

[Close]

BLAST of MELO3C003451 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME+VEAE+K+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKE+KML KTVGD
Sbjct: 1  MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKIQLARER+RNKRIKLCGLMEFVLQLLL+L  S
Sbjct: 61 LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLS 94

[Close]

BLAST of MELO3C003451 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQN  LRAT +E  KE++ LRKT+GD
Sbjct: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKASENYF 99
          LK++LARERLRNKRIKLCGLMEFVLQ+LL++  S  +F
Sbjct: 61 LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFF 97

[Close]

BLAST of MELO3C003451 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-25
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  EQAKE++ LRK VGD
Sbjct: 1  MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKI+LA ER RNKRIKLCGLMEFVLQLLL++  S
Sbjct: 61 LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLS 93

[Close]

BLAST of MELO3C003451 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  E+AKE++ LRK VGD
Sbjct: 1  MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKI+LA ER RN+RIKLCGLMEFVLQLLL++  S
Sbjct: 61 LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLS 93

[Close]

BLAST of MELO3C003451 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.6e-37
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD
Sbjct: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKIQLARERLRNKRIKLCGLMEFVLQLLL++  S
Sbjct: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLS 94

[Close]

BLAST of MELO3C003451 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME+VEAE+K+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKE+KML KTVGD
Sbjct: 1  MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKIQLARER+RNKRIKLCGLMEFVLQLLL+L  S
Sbjct: 61 LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLS 94

[Close]

BLAST of MELO3C003451 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQN  LRAT +E  KE++ LRKT+GD
Sbjct: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKASENYF 99
          LK++LARERLRNKRIKLCGLMEFVLQ+LL++  S  +F
Sbjct: 61 LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFF 97

[Close]

BLAST of MELO3C003451 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
          ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  EQAKE++ LRK VGD
Sbjct: 1  MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLLILKAS 95
          LKI+LA ER RNKRIKLCGLMEFVLQLLL++  S
Sbjct: 61 LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLS 93

[Close]

BLAST of MELO3C003451 vs. ExPASy TrEMBL
Match: A0A6A1UUX9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 51/99 (51.52%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           +E +E E+K EA++ SK  IRCAKAAFLLS+LKS  N  + +T  +Q +E +M+R+ + +
Sbjct: 3   IEGLEMETKHEALK-SKMLIRCAKAAFLLSALKSFPNLSMNSTTDDQDEEEEMVRREIEE 62

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLILKASENYFV 100
           LK++LARERL+NK++KLCGLME VLQ+ ++L  S  +F+
Sbjct: 63  LKMELARERLKNKKMKLCGLMEMVLQVAVVLSLSTFFFM 100

[Close]

BLAST of MELO3C003451 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-07
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 8   SKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGDLKIQLAR 67
           SKDE  R   TAIRCA+A  LL SL SS  R + +   +Q  E+   R+ + DL+ +L  
Sbjct: 3   SKDEFSR-DLTAIRCARATMLLYSLASS--RTIDSAGEKQ--EKGETRREIEDLRRKLTM 62

Query: 68  ERLRNKRIKLCGLMEFVLQLLLILKASENYFVPTEIVFFQG 109
            +++  RIKLCGLME +L + L+L  S  +     +VFF G
Sbjct: 63  VKIKMNRIKLCGLMELLLLVFLVLLLSTFF-----LVFFLG 93

The following BLAST results are available for this feature:

BLAST of MELO3C003451 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038606.1	1.4e-36	95.74	putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31...	[more]
XP_011652624.1	2.4e-33	89.36	uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ...	[more]
XP_022138206.1	1.7e-26	73.47	uncharacterized protein LOC111009432 [Momordica charantia]	[more]
XP_022940284.1	3.1e-25	76.60	uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar...	[more]
KAG7031715.1	1.6e-24	74.47	hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MELO3C003451 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C003451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E7E0	6.6e-37	95.74	Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LJY1	1.2e-33	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1	[more]
A0A6J1C920	8.1e-27	73.47	uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1FJM5	1.5e-25	76.60	uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6A1UUX9	1.4e-15	51.52	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1	[more]

BLAST of MELO3C003451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78172.1	7.0e-07	41.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003451.1	MELO3C003451.1	mRNA