MELO3C003252 (gene) Melon (DHL92) v4

Overview
NameMELO3C003252
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr08: 32317623 .. 32317955 (-)
RNA-Seq ExpressionMELO3C003252
SyntenyMELO3C003252
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAGAAATGCATGGAGGAGAAGCTGAAAACGTTTGATCAAGAAATTTTAGGAATACGCGCTAAATTACACAAGTTACCGTCAATTGAGGAAAATCTGATGTCGTTAGCGAAAAGTATGAGGTTAGGATTACAAGCCAAAAAGCAACAACAATCGTTGTTGAAATATATTGAAGGTAACGTGAAGGAGAAATCCACAATGATCGGAGGAGTAACGGAATCAGCAAGCAAAGGACCAATGATGGAGAGCACGATTGAAGGAGAAAGTACTTCAATGAAGGAAATCGAAATCAAAGGGAAAACGAGCAAAGGTGAAAGTGAAGAAAATTAG

mRNA sequence

ATGGCACAGAAATGCATGGAGGAGAAGCTGAAAACGTTTGATCAAGAAATTTTAGGAATACGCGCTAAATTACACAAGTTACCGTCAATTGAGGAAAATCTGATGTCGTTAGCGAAAAGTATGAGGTTAGGATTACAAGCCAAAAAGCAACAACAATCGTTGTTGAAATATATTGAAGGTAACGTGAAGGAGAAATCCACAATGATCGGAGGAGTAACGGAATCAGCAAGCAAAGGACCAATGATGGAGAGCACGATTGAAGGAGAAAGTACTTCAATGAAGGAAATCGAAATCAAAGGGAAAACGAGCAAAGGTGAAAGTGAAGAAAATTAG

Coding sequence (CDS)

ATGGCACAGAAATGCATGGAGGAGAAGCTGAAAACGTTTGATCAAGAAATTTTAGGAATACGCGCTAAATTACACAAGTTACCGTCAATTGAGGAAAATCTGATGTCGTTAGCGAAAAGTATGAGGTTAGGATTACAAGCCAAAAAGCAACAACAATCGTTGTTGAAATATATTGAAGGTAACGTGAAGGAGAAATCCACAATGATCGGAGGAGTAACGGAATCAGCAAGCAAAGGACCAATGATGGAGAGCACGATTGAAGGAGAAAGTACTTCAATGAAGGAAATCGAAATCAAAGGGAAAACGAGCAAAGGTGAAAGTGAAGAAAATTAG

Protein sequence

MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSMRLGLQAKKQQQSLLKYIEGNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEEN
Homology
BLAST of MELO3C003252 vs. NCBI nr
Match: KAA0038326.1 (Exosome complex component CSL4 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 13  FDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIEGNVKEKSTMIGG 72
           FDQEI GI+A+LHKLP+IEENLMSLAKS+ RLG+QA+KQ Q LLKY+E   KEKSTM  G
Sbjct: 2   FDQEISGIQAELHKLPTIEENLMSLAKSIERLGMQAEKQHQLLLKYVESMAKEKSTMSEG 61

Query: 73  VTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEEN 111
           VTESAS+G  M  TIE  ST MKEI  +G+T+K E EEN
Sbjct: 62  VTESASQGSAMAKTIEEGSTPMKEIGSEGRTTKIEIEEN 100

BLAST of MELO3C003252 vs. NCBI nr
Match: KAA0054161.1 (uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-21
Identity = 69/113 (61.06%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQS---LLK 60
           MAQK +EEKL+ FDQ+I  IR +LHKLP+IEENL S AKS+ RLG+QA+KQQQ    LLK
Sbjct: 1   MAQKRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEKQQQQQQLLLK 60

Query: 61  YIEGNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEE 110
           YIEG VKEKSTMI G+  S+SKG  +ES +EG   +MK+ +++ K SK E EE
Sbjct: 61  YIEGMVKEKSTMIEGIEGSSSKGRPVESVLEGSDATMKDTKLEVKMSKIEEEE 113

BLAST of MELO3C003252 vs. NCBI nr
Match: KAA0049778.1 (uncharacterized protein E6C27_scaffold76G001330 [Cucumis melo var. makuwa] >TYK23085.1 uncharacterized protein E5676_scaffold142G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKK--QQQSLLKY 60
           MAQK +EEKLK  DQ+   IR +LHKL +IEENL S+AKS+ RLG+QA+K  QQQ LLK 
Sbjct: 1   MAQKRIEEKLKPVDQDTSSIRVELHKLSTIEENLASMAKSIERLGIQAEKQHQQQLLLKC 60

Query: 61  IEGNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKT 103
           IEG +KEKSTMI G   S+SKG  + S ++G + S++EI+   KT
Sbjct: 61  IEGIMKEKSTMIEGPEGSSSKGSRIASMMDGGNPSIQEIKTATKT 105

BLAST of MELO3C003252 vs. NCBI nr
Match: KAA0057101.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK20636.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIE 60
           M  K  EEKL  FD EI G+R +LHKLP+IEEN M+  KS+ RLG+QAKK ++ L+ Y+E
Sbjct: 1   MTHKHFEEKLDAFDPEISGMRVELHKLPAIEENFMTRVKSIKRLGVQAKKHKKLLMMYVE 60

Query: 61  GNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKG 101
           G  K  S  +GG+ ES SKG  +ES +EG  TS  + + +G
Sbjct: 61  GLSKGHSITVGGLEESLSKGKSIESNVEGGETSKNKDKSRG 101

BLAST of MELO3C003252 vs. NCBI nr
Match: KAA0037165.1 (histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa] >TYK13907.1 histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIE 60
           M  K +EEKL+ FDQEI  I+ + HKLP+IEE L+S+ KS+ RL +Q  KQQQ LLKY+E
Sbjct: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60

Query: 61  GNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEEN 111
           G +K++ST++ G+ ES SK   +E  ++G    MK I+I  KT+  E  +N
Sbjct: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKN 111

BLAST of MELO3C003252 vs. ExPASy TrEMBL
Match: A0A5A7T7Y2 (Exosome complex component CSL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002000 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 13  FDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIEGNVKEKSTMIGG 72
           FDQEI GI+A+LHKLP+IEENLMSLAKS+ RLG+QA+KQ Q LLKY+E   KEKSTM  G
Sbjct: 2   FDQEISGIQAELHKLPTIEENLMSLAKSIERLGMQAEKQHQLLLKYVESMAKEKSTMSEG 61

Query: 73  VTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEEN 111
           VTESAS+G  M  TIE  ST MKEI  +G+T+K E EEN
Sbjct: 62  VTESASQGSAMAKTIEEGSTPMKEIGSEGRTTKIEIEEN 100

BLAST of MELO3C003252 vs. ExPASy TrEMBL
Match: A0A5A7UKU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00900 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 69/113 (61.06%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQS---LLK 60
           MAQK +EEKL+ FDQ+I  IR +LHKLP+IEENL S AKS+ RLG+QA+KQQQ    LLK
Sbjct: 1   MAQKRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEKQQQQQQLLLK 60

Query: 61  YIEGNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEE 110
           YIEG VKEKSTMI G+  S+SKG  +ES +EG   +MK+ +++ K SK E EE
Sbjct: 61  YIEGMVKEKSTMIEGIEGSSSKGRPVESVLEGSDATMKDTKLEVKMSKIEEEE 113

BLAST of MELO3C003252 vs. ExPASy TrEMBL
Match: A0A5D3DHM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00650 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKK--QQQSLLKY 60
           MAQK +EEKLK  DQ+   IR +LHKL +IEENL S+AKS+ RLG+QA+K  QQQ LLK 
Sbjct: 1   MAQKRIEEKLKPVDQDTSSIRVELHKLSTIEENLASMAKSIERLGIQAEKQHQQQLLLKC 60

Query: 61  IEGNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKT 103
           IEG +KEKSTMI G   S+SKG  + S ++G + S++EI+   KT
Sbjct: 61  IEGIMKEKSTMIEGPEGSSSKGSRIASMMDGGNPSIQEIKTATKT 105

BLAST of MELO3C003252 vs. ExPASy TrEMBL
Match: A0A5A7T6R2 (Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001010 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIE 60
           M  K +EEKL+ FDQEI  I+ + HKLP+IEE L+S+ KS+ RL +Q  KQQQ LLKY+E
Sbjct: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60

Query: 61  GNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKGKTSKGESEEN 111
           G +K++ST++ G+ ES SK   +E  ++G    MK I+I  KT+  E  +N
Sbjct: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKN 111

BLAST of MELO3C003252 vs. ExPASy TrEMBL
Match: A0A5A7UUC3 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00180 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 1   MAQKCMEEKLKTFDQEILGIRAKLHKLPSIEENLMSLAKSM-RLGLQAKKQQQSLLKYIE 60
           M  K  EEKL  FD EI G+R +LHKLP+IEEN M+  KS+ RLG+QAKK ++ L+ Y+E
Sbjct: 1   MTHKHFEEKLDAFDPEISGMRVELHKLPAIEENFMTRVKSIKRLGVQAKKHKKLLMMYVE 60

Query: 61  GNVKEKSTMIGGVTESASKGPMMESTIEGESTSMKEIEIKG 101
           G  K  S  +GG+ ES SKG  +ES +EG  TS  + + +G
Sbjct: 61  GLSKGHSITVGGLEESLSKGKSIESNVEGGETSKNKDKSRG 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038326.11.4e-2168.69Exosome complex component CSL4 [Cucumis melo var. makuwa][more]
KAA0054161.13.1e-2161.06uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa][more]
KAA0049778.12.6e-1557.14uncharacterized protein E6C27_scaffold76G001330 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0057101.13.7e-1450.50transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK20636.1 t... [more]
KAA0037165.13.7e-1448.65histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa] >... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T7Y26.8e-2268.69Exosome complex component CSL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7UKU81.5e-2161.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DHM51.2e-1557.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T6R21.8e-1448.65Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa ... [more]
A0A5A7UUC31.8e-1450.50Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003252.1MELO3C003252.1mRNA