MELO3C003167 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003167
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich cell wall structural protein 1.0-like
Location	chr08: 31303778 .. 31304200 (-)
RNA-Seq Expression	MELO3C003167
Synteny	MELO3C003167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCACTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCATTACTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGTGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA

mRNA sequence

ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCACTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCATTACTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGTGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA

Coding sequence (CDS)

ATGTCTAAGAGAAAAGATAAAATTGGAATATATCTCGAAGGTGGAAATACAAGTACAACAGACAGCAATATGTTTACTGGCACTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTCAGCACTGTCGGAGATACAGTCAACGGTGAAGGTGGCGAGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCATTACTGGAGGCAACGGCGGAGGTGGCAGTGGAGTAAGTATTCATGAGACAGGTTGTGGTGGTGGTGATAGCGGAGGTAGAGGGGTTTCTGAACATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGTCATAGTTATGGAGGCGGAGGAACAAGTTCTAATGATCACGGCGGAGGTGGAAGTGGAGGTGGAGGGTTTTCTGATTTTGGAGGGGGAGGATCATCTATTTGGTGA

Protein sequence

MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDGNGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHGGGGSGGGGFSDFGGGGSSIW

Homology

[Close]

BLAST of MELO3C003167 vs. NCBI nr
Match: XP_008450026.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0045153.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK23585.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
           MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120
           NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120

Query: 121 GGGSGGGGFSDFGGGGSSIW 141
           GGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGSGGGGFSDFGGGGSSIW 140

[Close]

BLAST of MELO3C003167 vs. NCBI nr
Match: KAE8649549.1 (hypothetical protein Csa_018168, partial [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
          MS  KDK GIY+EGGNTSTTDSNMF+G+SYGGWGWDWTFSTVGDTVNG  G NSLEVGDG
Sbjct: 1  MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61 NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVG 99
          NGG+TGG GGGGS  SIHET CG GD GG GVS+HGVG
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 98

[Close]

BLAST of MELO3C003167 vs. NCBI nr
Match: KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-12
Identity = 80/172 (46.51%), Postives = 92/172 (53.49%), Query Frame = 0


Query: 2   SKRKDKIGIYLEGGNT--STTDSNMFTGTS------YGGWGWDWTFSTVGDTVNGEG-GE 61
           + R  K G Y+EGGN      D   + GT+      YGGWGWDWTFS+VGDT NG G G 
Sbjct: 37  ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96

Query: 62  NSLEVGDGNG-GITGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
              +VG G G    GG G             G G+G S HE G GGG           GG
Sbjct: 97  GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGG 156

Query: 122 RGVSEHGVGVSSHVDGGHSYGGGGTSSNDHGGGGS-----GGGGFSDFGGGG 137
             VS+HG G S H+DGGHS  GGG SS+  GGGG+     GGGG SD+GGGG
Sbjct: 157 GTVSDHGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGG 208

[Close]

BLAST of MELO3C003167 vs. NCBI nr
Match: XP_022931867.1 (glycine-rich protein 23-like [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 78/172 (45.35%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 2   SKRKDKIGIYLEGGNT--STTDSNMFTGTS------YGGWGWDWTFSTVGDTVNGEG-GE 61
           + R  K G Y+EGGN      D   + GT+      YGGWGWDWTFS+VGDT NG G G 
Sbjct: 37  ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96

Query: 62  NSLEVGDGNG-GITGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
              +VG G G    GG G             G G+G S HE G G G           GG
Sbjct: 97  GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGG 156

Query: 122 RGVSEHGVGVSSHVDGGHSYGGGGTSSNDHGGGGS-----GGGGFSDFGGGG 137
             VS+ G G S H+DGGHS  GGG SS+  GGGG+     GGGG SD+GGGG
Sbjct: 157 GTVSDRGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGG 208

[Close]

BLAST of MELO3C003167 vs. NCBI nr
Match: XP_022966633.1 (loricrin-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-10
Identity = 80/181 (44.20%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 2   SKRKDKIGIYLEGGNT--STTDSNMFTGTS------YGGWGWDWTFSTVGDTVNGE---- 61
           + R  K G Y+EGGN      D   + GT+      YGGWGWDWTFS+VGDT NG     
Sbjct: 17  ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNDGGG 76

Query: 62  ----GGENSLEVGD-----GNGGITGGNGGGGSGVSIHETGCGGG---------DSGGRG 121
               GG    EVG      G G   G   G G+G S HE G G G           GG  
Sbjct: 77  CDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGT 136

Query: 122 VSEHGVGVSSHVDGGHSYGGGGTS---------SNDHGGGG-------SGGGGFSDFGGG 137
           VS+HG G S H+DGGHS  GGG S         S+DHGGGG        GGGG SD+GGG
Sbjct: 137 VSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGGGGGASYDHGGGGGVSDYGGG 196

[Close]

BLAST of MELO3C003167 vs. ExPASy TrEMBL
Match: A0A5A7TNP5 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00930 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.3e-65
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
           MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120
           NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120

Query: 121 GGGSGGGGFSDFGGGGSSIW 141
           GGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGSGGGGFSDFGGGGSSIW 140

[Close]

BLAST of MELO3C003167 vs. ExPASy TrEMBL
Match: A0A1S3BNC1 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491739 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.3e-65
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
           MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120
           NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGGHSYGGGGTSSNDHG 120

Query: 121 GGGSGGGGFSDFGGGGSSIW 141
           GGGSGGGGFSDFGGGGSSIW
Sbjct: 121 GGGSGGGGFSDFGGGGSSIW 140

[Close]

BLAST of MELO3C003167 vs. ExPASy TrEMBL
Match: A0A0A0KXB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.6e-45
Identity = 119/171 (69.59%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60
           MS  KDK GIY+EGGNTSTTDSNMF+G+SYGGWGWDWTFSTVGDTVNG  G NSLEVGDG
Sbjct: 1   MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYGGGGTSSNDH 120
           NGG+TGG GGGGS  SIHET CG GD GG GVS+HGVGVSSHVD GG SYGGGGTSSND 
Sbjct: 61  NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYGGGGTSSNDR 120

Query: 121 ------------------------------GGGGSGGGGFSDFGGGGSSIW 141
                                         GGGG GGGGFSDFGGGGSSIW
Sbjct: 121 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFSDFGGGGSSIW 171

[Close]

BLAST of MELO3C003167 vs. ExPASy TrEMBL
Match: A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 80/181 (44.20%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 2   SKRKDKIGIYLEGGNT--STTDSNMFTGTS------YGGWGWDWTFSTVGDTVNGE---- 61
           + R  K G Y+EGGN      D   + GT+      YGGWGWDWTFS+VGDT NG     
Sbjct: 17  ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNDGGG 76

Query: 62  ----GGENSLEVGD-----GNGGITGGNGGGGSGVSIHETGCGGG---------DSGGRG 121
               GG    EVG      G G   G   G G+G S HE G G G           GG  
Sbjct: 77  CDVGGGGGDSEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGT 136

Query: 122 VSEHGVGVSSHVDGGHSYGGGGTS---------SNDHGGGG-------SGGGGFSDFGGG 137
           VS+HG G S H+DGGHS  GGG S         S+DHGGGG        GGGG SD+GGG
Sbjct: 137 VSDHGGGGSFHMDGGHSNFGGGASSHGGGGDGASHDHGGGGGGASYDHGGGGGVSDYGGG 196

[Close]

BLAST of MELO3C003167 vs. ExPASy TrEMBL
Match: A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 78/172 (45.35%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 2   SKRKDKIGIYLEGGNT--STTDSNMFTGTS------YGGWGWDWTFSTVGDTVNGEG-GE 61
           + R  K G Y+EGGN      D   + GT+      YGGWGWDWTFS+VGDT NG G G 
Sbjct: 37  ASRGRKSGSYVEGGNRIGIVVDDGSYVGTTPMFNGGYGGWGWDWTFSSVGDTGNGNGNGG 96

Query: 62  NSLEVGDGNG-GITGGNG-------------GGGSGVSIHETGCGGG---------DSGG 121
              +VG G G    GG G             G G+G S HE G G G           GG
Sbjct: 97  GGCDVGGGGGDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGG 156

Query: 122 RGVSEHGVGVSSHVDGGHSYGGGGTSSNDHGGGGS-----GGGGFSDFGGGG 137
             VS+ G G S H+DGGHS  GGG SS+  GGGG+     GGGG SD+GGGG
Sbjct: 157 GTVSDRGGGGSFHMDGGHSNFGGGVSSHGGGGGGASYDHGGGGGVSDYGGGG 208

The following BLAST results are available for this feature:

BLAST of MELO3C003167 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450026.1	1.3e-64	100.00	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA...	[more]
KAE8649549.1	1.3e-32	81.63	hypothetical protein Csa_018168, partial [Cucumis sativus]	[more]
KAG6595345.1	5.7e-12	46.51	hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931867.1	3.2e-10	45.35	glycine-rich protein 23-like [Cucurbita moschata]	[more]
XP_022966633.1	3.2e-10	44.20	loricrin-like [Cucurbita maxima]	[more]

BLAST of MELO3C003167 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C003167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNP5	6.3e-65	100.00	Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BNC1	6.3e-65	100.00	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KXB6	5.6e-45	69.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1	[more]
A0A6J1HSN5	1.5e-10	44.20	loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1	[more]
A0A6J1EUX9	1.5e-10	45.35	glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ...	[more]

BLAST of MELO3C003167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003167.1	MELO3C003167.1	mRNA