MELO3C003127 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003127
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cyclin-dependent protein kinase inhibitor SMR3-like
Location	chr08: 30906190 .. 30906645 (-)
RNA-Seq Expression	MELO3C003127
Synteny	MELO3C003127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCAGAATTCCAAGAAATCTCCCCCAGGCCCCCCCTCCCTTTGCCTGACCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCAGCTCCATCACTACTCCACCTTCTCTCCCCTCCCCTTCCGATTCCATACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGACGATGAAGAACATAGCGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACGTTGTCCGCGCGAGCCTCCGCCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACGAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCATAAGAGTAAGAAAGCTCGGAAAGACGACGATAATGGCGGTGAATGA

mRNA sequence

ATGACCTCAGAATTCCAAGAAATCTCCCCCAGGCCCCCCCTCCCTTTGCCTGACCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCAGCTCCATCACTACTCCACCTTCTCTCCCCTCCCCTTCCGATTCCATACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGACGATGAAGAACATAGCGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACGTTGTCCGCGCGAGCCTCCGCCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACGAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCATAAGAGTAAGAAAGCTCGGAAAGACGACGATAATGGCGGTGAATGA

Coding sequence (CDS)

ATGACCTCAGAATTCCAAGAAATCTCCCCCAGGCCCCCCCTCCCTTTGCCTGACCATCAGATTTCCTTGATCCGCCTCGACCACATCGACTTCCTTTTCGATTCCTTCTCCAGCTCCATCACTACTCCACCTTCTCTCCCCTCCCCTTCCGATTCCATACAAGATCAACCACCTGTTTCCATCTCCGCCGTTGATGACGATGAAGAACATAGCGACGGTTTCACAACCCCCATCTCTTCACATCATAAGATTCCTGTCATTCCACACTGTCCCCCGGCTCCTTCAAGACCCAAACCCATCTCCTTGTCCAGAACGTTGTCCGCGCGAGCCTCCGCCGTTCGTAGAGGTTTTCTAGTGTATATCTCCGACGAGATCGTTGATTCCATCTTTTCCGATGATTTGCTGCATCATAAGAGTAAGAAAGCTCGGAAAGACGACGATAATGGCGGTGAATGA

Protein sequence

MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVYISDEIVDSIFSDDLLHHKSKKARKDDDNGGE

Homology

[Close]

BLAST of MELO3C003127 vs. NCBI nr
Match: KAA0032644.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK23525.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 4.2e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60
           MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS
Sbjct: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60

Query: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120
           ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY
Sbjct: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120

Query: 121 ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 152
           ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE
Sbjct: 121 ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 151

[Close]

BLAST of MELO3C003127 vs. NCBI nr
Match: KAE8649529.1 (hypothetical protein Csa_017979 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 9.1e-64
Identity = 134/150 (89.33%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60
           M SEFQEISP  PLPLPDHQISLIRLDHIDFLFDSFSS  T P SLPSPS S+QDQPPVS
Sbjct: 1   MASEFQEISP-GPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVS 60

Query: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120
           ISAVDDD+EH+DGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLS RAS VRRGFLVY
Sbjct: 61  ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVY 120

Query: 121 ISDEIVDSIFSDDLLHHKS-KKARKDDDNG 150
           ISD+IVDSIFSDDLLH KS KKARKDDDNG
Sbjct: 121 ISDQIVDSIFSDDLLHQKSKKKARKDDDNG 149

[Close]

BLAST of MELO3C003127 vs. NCBI nr
Match: XP_038877666.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-32
Identity = 99/161 (61.49%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISL--------IRLDHIDFLFDSFSSSITTPPSLPSPSDS 60
           M SEFQEIS    L LPD QIS          RL+ IDF+F     S+   P   +P++ 
Sbjct: 1   MASEFQEIS----LTLPD-QISFSAITPQPTFRLNQIDFIF-----SLNNEPDRLAPAE- 60

Query: 61  IQDQPPVSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASA 120
                  SISAVDDD+   DGF TP+SS HKIPV+ HCPPAP RPKPISLSRT S RAS 
Sbjct: 61  -------SISAVDDDD---DGFRTPVSSDHKIPVVRHCPPAPKRPKPISLSRTSSMRASG 120

Query: 121 VRRGFLVYISDEIVDSIFSDDLLHHKS-KKARK-DDDNGGE 152
           VRRGF VYISDEIVDSIF  DLLH KS KKARK DDDNGGE
Sbjct: 121 VRRGFRVYISDEIVDSIFCSDLLHQKSKKKARKDDDDNGGE 140

[Close]

BLAST of MELO3C003127 vs. NCBI nr
Match: XP_023518540.1 (uncharacterized protein LOC111782016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 9.2e-24
Identity = 82/155 (52.90%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPS--DSIQDQPP 60
           M S+F+EIS  P       ++ L   D I+F+F    +    P +L S    DS   +  
Sbjct: 62  MASQFREISLTP----ESFRVKLEDADQIEFIF----AVENRPLALESQQRCDSSAPEES 121

Query: 61  VSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFL 120
           + ISAVDD+    DGF TP SS +KIP++ HCPPAP RPKPISLSRT S R S VRRGF 
Sbjct: 122 LLISAVDDE----DGFRTPTSSDYKIPLVEHCPPAPRRPKPISLSRT-SPRVSGVRRGFR 181

Query: 121 VYISDEIVDSIFS----DDLLHHKSKKARKDDDNG 150
           VYISDEIVDSIFS     D L HK+KKARKDD  G
Sbjct: 182 VYISDEIVDSIFSSSFGSDFLQHKNKKARKDDHGG 203

[Close]

BLAST of MELO3C003127 vs. NCBI nr
Match: XP_022950456.1 (uncharacterized protein LOC111453550 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 87/163 (53.37%), Postives = 99/163 (60.74%), Query Frame = 0


Query: 1   MTSEFQEISP--RPPL---PLPDHQISLIRL----DHIDFLFDSFSSSITTPPSLPSPSD 60
           M S FQEISP   P +    +   Q   + L    + IDF+F     ++   P L S S 
Sbjct: 65  MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIF-----ALNDDPPLASDSV 124

Query: 61  SI---QDQPPVSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSA 120
           S+   +  PP SIS  DDD    DGF TP SS HKIPV+  CPPAP RPKPIS SRTL  
Sbjct: 125 SVSLDRSAPPDSIS--DDD----DGFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-P 184

Query: 121 RASAVRRGFLVYISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 152
           R S VRRGF VYISDEI DSIF  DLLH K+KKARK + NGGE
Sbjct: 185 RTSGVRRGFRVYISDEIADSIFCPDLLHQKTKKARK-NGNGGE 214

[Close]

BLAST of MELO3C003127 vs. ExPASy TrEMBL
Match: A0A5A7SN91 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00290 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60
           MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS
Sbjct: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60

Query: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120
           ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY
Sbjct: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120

Query: 121 ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 152
           ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE
Sbjct: 121 ISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 151

[Close]

BLAST of MELO3C003127 vs. ExPASy TrEMBL
Match: A0A0A0KZJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.1e-65
Identity = 136/152 (89.47%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MTSEFQEISPRPPLPLPDHQISLIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPPVS 60
           M SEFQEISP  PLPLPDHQISLIRLDHIDFLFDSFSS  T P SLPSPS S+QDQPPVS
Sbjct: 1   MASEFQEISP-GPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPPVS 60

Query: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFLVY 120
           ISAVDDD+EH+DGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLS RAS VRRGFLVY
Sbjct: 61  ISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFLVY 120

Query: 121 ISDEIVDSIFSDDLLHHKS-KKARKDDDNGGE 152
           ISD+IVDSIFSDDLLH KS KKARKDDDNGGE
Sbjct: 121 ISDQIVDSIFSDDLLHQKSKKKARKDDDNGGE 151

[Close]

BLAST of MELO3C003127 vs. ExPASy TrEMBL
Match: A0A6J1GEW0 (uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC111453550 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.4e-23
Identity = 87/163 (53.37%), Postives = 99/163 (60.74%), Query Frame = 0


Query: 1   MTSEFQEISP--RPPL---PLPDHQISLIRL----DHIDFLFDSFSSSITTPPSLPSPSD 60
           M S FQEISP   P +    +   Q   + L    + IDF+F     ++   P L S S 
Sbjct: 65  MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIF-----ALNDDPPLASDSV 124

Query: 61  SI---QDQPPVSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSA 120
           S+   +  PP SIS  DDD    DGF TP SS HKIPV+  CPPAP RPKPIS SRTL  
Sbjct: 125 SVSLDRSAPPDSIS--DDD----DGFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-P 184

Query: 121 RASAVRRGFLVYISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 152
           R S VRRGF VYISDEI DSIF  DLLH K+KKARK + NGGE
Sbjct: 185 RTSGVRRGFRVYISDEIADSIFCPDLLHQKTKKARK-NGNGGE 214

[Close]

BLAST of MELO3C003127 vs. ExPASy TrEMBL
Match: A0A6J1CQ22 (cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=3673 GN=LOC111013692 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 79/156 (50.64%), Postives = 88/156 (56.41%), Query Frame = 0


Query: 1   MTSEFQEI--SPRPPLPLP--DHQISLIRLD----HIDFLFDSFSSSITTPPSLPSPSDS 60
           M S FQEI  SP P + LP    +  L+ L+     IDFLF     ++ T        DS
Sbjct: 1   MASHFQEISLSPSPQISLPSISPESFLLNLEDANNQIDFLF-----ALNTNQQQARRDDS 60

Query: 61  IQDQPPVSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISL-SRTLSAR-A 120
           I         + DD     DGF TP SS HKIPVI  CPPAP RPKPIS  SR  S R A
Sbjct: 61  I---------SADD-----DGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRLA 120

Query: 121 SAVRRGFLVYISDEIVDSIFSDDLLHHKSKKARKDD 147
           S VRRGF VYISDEIV+SIFS    H K KKAR+DD
Sbjct: 121 SGVRRGFRVYISDEIVESIFSSSFAHQKMKKARRDD 137

[Close]

BLAST of MELO3C003127 vs. ExPASy TrEMBL
Match: A0A5D3AH22 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A01G241600v1 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 61  ISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLS--RTLSARASAVRRGFL 120
           + A DD ++  DGF TP S  HKIPV+  CPPAP +PKP+S    +  S  +S   R  L
Sbjct: 99  LKANDDGDDDDDGFKTPTSLDHKIPVMKQCPPAPRKPKPLSSKKRKPSSPPSSGGDRNLL 158

Query: 121 VYISDEIVDSIFSDDLL---HHKSKKARKDDDN 149
                + V+S+F  D+L   H K KKARK+D N
Sbjct: 159 KIDFAKEVESLFPSDVLADIHRKVKKARKEDYN 191

The following BLAST results are available for this feature:

BLAST of MELO3C003127 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032644.1	4.2e-77	100.00	cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >...	[more]
KAE8649529.1	9.1e-64	89.33	hypothetical protein Csa_017979 [Cucumis sativus]	[more]
XP_038877666.1	4.1e-32	61.49	cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida]	[more]
XP_023518540.1	9.2e-24	52.90	uncharacterized protein LOC111782016 [Cucurbita pepo subsp. pepo]	[more]
XP_022950456.1	1.3e-22	53.37	uncharacterized protein LOC111453550 [Cucurbita moschata]	[more]

BLAST of MELO3C003127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C003127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN91	2.0e-77	100.00	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KZJ9	3.1e-65	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1	[more]
A0A6J1GEW0	6.4e-23	53.37	uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1CQ22	2.5e-19	50.64	cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=36...	[more]
A0A5D3AH22	1.3e-07	44.09	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A01G241600v1 P...	[more]

BLAST of MELO3C003127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..85
None	No IPR available	PANTHER	PTHR33142:SF79	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR3	coord: 22..147
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 22..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003127.1	MELO3C003127.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication