MELO3C003108 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003108
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Histone H2A
Location	chr08: 30702995 .. 30706018 (-)
RNA-Seq Expression	MELO3C003108
Synteny	MELO3C003108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCTCATTTCACAAAAGTAATGTCATCTCTGTTGAAACCTCGTCGTTAACTTCCCTCACTCTTTCACCTTTTCTGTTTTTTTTTTTTTTTTTTCTTTTTACTTTTTTGTTTCCCCGGAAAATTTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGAAGAGGCGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGTCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTGAATATTTACTACTGCTTCGTTCTTCTCTGTTTGTTACTTTCGATTTACTTAATTTAGGGTTTCTTTTTTCAGTTTCTGTTGGAGGATTTTACATGTTTTAATTGTGTGTGAGAAATCTGATCGTTTATTCAAAGGATTATATGCTTGGATTGGAATGCATTTTCTTTATTTCTTGTGAATGGCTTAGAATTTGATTTTCTTAGCTCTTTCTCTTCATATATAAAATCCCCAATTTAATGGAATTAGTTTTGTTGTTATTATTATTATTACTATCATTTATGCAATCTATTCTCTGATTTCCCTATTTGGTTTTGTGTATATAGACAAGTTCATTCTAAGTTTTCAGACAATCTAGAAAGGAAAAAATCACCGATTTTAAATATAGAATTTTAAGGTCTTCTTAGTTCTTGACATCGATTTCACTTTTTTTTTTTTAGCATTGGTTTGATAACCACTTTGTTTTTTATTTTTAAATTTTAAAATTAAGTTTTAAAGCTTCGTTTGGTAACCACGTTTGGTCTTTGGTTCTTTGTTTTTTGAAATTAAGCCAAATTGACTTAAAATCTTAGTCAATTTCTAAAAACAAAAACTACACTTCTTTTAGTTTTAAATCTTGGTAGAACTTAGAAACCAATAAATGAAAGTGGGATTTGTAGGTATAATTTTCAAAAAAAACAAATGGTTAACAAAGAAACAGAAAATGTTGGGTTCTTATTTTTTACCAATAATTTAAAAACTATTCTCAAGTATATAATTTTTTTTTTAAAAAAAAGATCTTTTTGAAAAAAATTAATGTGTTTGGTAACCGCTCATACCACCTTTTCAAGTAAAATTTAAACATTTTTTATCCAAAAAATTTAAATAAAAAAGAACTTTGGAAAAACACTTAAGCAGAGACCCAATCAAATTTTAGAAATTAAAACAATAGTAGTTTCTATTTTATTATTATTTCTTTTACATTTTACTAAGAATTCAACTTACAAGATGTAATAATTTTAATTTTCAAAAGTAAAAAATGAAAAACGAAATGGATAGCAAATAGAAACTCAAATTTCTGTCTTTGAAATTTACGATTGTTTCATCTTCTTTTTATATTACTGTTTTCATGTTTTGTAGAGAGACGCTTAAATCTCTAGTTAAATTCTTAAAACAAATACAAATTAATAGAACGTGGATAACAAAAACACTTTTATTTTGGGGTCTTTTTTTTTTTTTTTTGAAAGATCGTTGTTTGGTAGAGATTTTAGAGTTTGAAAAAGCGTACAAATGTTGCTTATAAATCAAACACTGTTTTAAATAACAAATACATTTTTTTTTTCAAATATTTTAATTAGTTTATTTGAGTGAATCTGAAAAATTAGAAATTCAAACTGAATAGATTCTCAACTTCCCTCGGTATCCGCTTTGCCTTGCTTTTGTAACTCTTTTCAGCTGTCCTTTATGTCCTGATTCTGATGCTTTATCCAAATGATTTTGTGTTGATTTTGGCATCATAGAAATTGCTGCTTTTCTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTTTGTATTTCAACAATTGTGGGGTCGGATATCAAACCATCAATCTTTAAGATGGTAAATTGATGTCTTTGTTCAGTAAGCATTTGAATTTTATGTTTCTTACCAAGAGAAATTTTGGTCATCCATTGACGTCTAGTAGAATTCTTTTAATTCATTCACCGATTGAATCTTGCACAAAAGTGTTTGATGATAATACAAGAATTGATGTTGTATACTGAGCTATTGGGTTAATGTGTTAAGGATATCCATATAAAAGATGAAATATAAGTGTCACTAACTTCCAAACTTGAACATATTGATGTCGTAGTGAATATAGTATTCGAGTTGTCCATCATGGGTTGACCTAGTGGTAAACAAGGTCATGAGTTTGATGAAGGGCTAGGAGGGATGAGTCCAATTTCTAGTGACTACCTACCTAAGGTTTAATATCTTACTAGTTTCCTTGATATCCAAATATCGTAGAACAAGGTAGGTTGTTAATGAGATTAGTCGAGATACGTGTAAGCTGGTCCAGAAACTCACAGTTCAAATCATCTATCAGTTTAATTAAGATCGCATTATACTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAAAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCGAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCAGGGACGGCAGCAAAGGAGCCTAAGTCTCCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAGCTTAGCTTAAGTTCTAATATGCTCCACGACTACTCAATTTCTGTATTTAGATTGGAGCTATCTTCATGTTTAGGACCGCCTTTTATCTGTTTGTGCCTTTATATATTGTAGTATATTCCTTTGTGTTATCCCAAATCTCAGTTGAAATGATGTAAGTTTTAACATCTCTTATGAATGTTTGTATCTTCTCCACTGATGGGTTAATGTATGTAGAAGGCTTTCTGAGATGGATTGAATGATTGGATCATTTGATGGATATACAAATTTTGTCCCTATAAGTTTCTATAATTCCTATTTTATCTTTTCCTCACA

mRNA sequence

ATTTTTCTCATTTCACAAAAGTAATGTCATCTCTGTTGAAACCTCGTCGTTAACTTCCCTCACTCTTTCACCTTTTCTGTTTTTTTTTTTTTTTTTTCTTTTTACTTTTTTGTTTCCCCGGAAAATTTTCTCTTCCAATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGAAGAGGCGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGTCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAAAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCGAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCAGGGACGGCAGCAAAGGAGCCTAAGTCTCCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAGCTTAGCTTAAGTTCTAATATGCTCCACGACTACTCAATTTCTGTATTTAGATTGGAGCTATCTTCATGTTTAGGACCGCCTTTTATCTGTTTGTGCCTTTATATATTGTAGTATATTCCTTTGTGTTATCCCAAATCTCAGTTGAAATGATGTAAGTTTTAACATCTCTTATGAATGTTTGTATCTTCTCCACTGATGGGTTAATGTATGTAGAAGGCTTTCTGAGATGGATTGAATGATTGGATCATTTGATGGATATACAAATTTTGTCCCTATAAGTTTCTATAATTCCTATTTTATCTTTTCCTCACA

Coding sequence (CDS)

ATGGATTCTGGCGGCAAGGCGAAGAAAGGCTTCGCCGGCAGAAGAGGCGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGTCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAAAACAGGATCATCCCGAGACACGTGCTCTTGGCTGTGAGGAATGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATTGCTCATGGTGGGGTGCTTCCGAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGGCAGGGACGGCAGCAAAGGAGCCTAAGTCTCCCTCCAAGGGTACCAAGTCCCCCAAGAAGGCCTAG

Protein sequence

MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA

Homology

[Close]

BLAST of MELO3C003108 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.0e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MELO3C003108 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of MELO3C003108 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 272.3 bits (695), Expect = 2.5e-69
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  A KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERA-AAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of MELO3C003108 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+A  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEKA--AAKEPKSPSKATKSPKKA 150

[Close]

BLAST of MELO3C003108 vs. NCBI nr
Match: KAG5553850.1 (hypothetical protein RHGRI_011654 [Rhododendron griersonianum])

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 139/153 (90.85%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++GGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+A  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEKA--AAKEPKSPSKATKSPKKA 150

[Close]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-67
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INP+LLPKKSE+A +  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-66
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G K KKG AG R G GPKKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAA-KEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+A  AA KEPKSP+K TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-63
Identity = 130/154 (84.42%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+  K KKG  GR+GG GP+KK V+RS++AGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MDASTKTKKGAGGRKGG-GPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPS-KGTKSPKKA 154
           INPVLLPKK+ER+ T +KEPKSP  K  KSPKKA
Sbjct: 121 INPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.2e-63
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++ GKAKKGF GR+G  GP+KK V+RSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METAGKAKKGFGGRKG--GPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+  A  AAKEPKSPSK  KSPKKA
Sbjct: 121 INPVLLPKKT--AEKAAKEPKSPSKAGKSPKKA 149

[Close]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-61
Identity = 132/160 (82.50%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAGT----AAKEPKSPSKG-TKSPKKA 154
           PNINPVLLPKK+  A        K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

[Close]

BLAST of MELO3C003108 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MELO3C003108 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MELO3C003108 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.9e-71
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERA-AAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of MELO3C003108 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  A KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERA-AAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of MELO3C003108 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+A  AAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEKA--AAKEPKSPSKATKSPKKA 150

[Close]

BLAST of MELO3C003108 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-68
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           INP+LLPKKSE+A +  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of MELO3C003108 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64
Identity = 134/177 (75.71%), Postives = 140/177 (79.10%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+A +  K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of MELO3C003108 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 114/153 (74.51%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+S GK KK F GR+    PK K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           IN VLLPKKS       K  KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

[Close]

BLAST of MELO3C003108 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-50
Identity = 109/148 (73.65%), Postives = 120/148 (81.08%), Query Frame = 0


Query: 6   KAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVL 65
           K  +G  GR+G  G +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRKG--GDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSERAGTAAKEPKSPSKGTKSPKKA 154
           LPKKS    TA+      +  TKSPKKA
Sbjct: 129 LPKKS----TASSSQAEKASATKSPKKA 150

[Close]

BLAST of MELO3C003108 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 177.6 bits (449), Expect = 7.8e-45
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 13  GRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G+  G+G  KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSER 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGA 124

Query: 133 AGTAAKE 140
           +  +A E
Sbjct: 125 SKPSADE 131

The following BLAST results are available for this feature:

BLAST of MELO3C003108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447608.1	4.0e-75	100.00	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_004142082.1	1.0e-70	97.39	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_022143711.1	2.5e-69	96.73	histone H2A [Momordica charantia]	[more]
KAE9455642.1	3.4e-66	91.50	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]
KAG5553850.1	7.6e-66	90.85	hypothetical protein RHGRI_011654 [Rhododendron griersonianum]	[more]

BLAST of MELO3C003108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	1.9e-67	87.58	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	7.8e-66	88.31	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	2.8e-63	84.42	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
P19177	6.2e-63	85.62	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
A2Y5G8	1.5e-61	82.50	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]

BLAST of MELO3C003108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1I6	1.9e-75	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	1.9e-75	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A0A0KXF2	4.9e-71	97.39	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A6J1CR43	1.2e-69	96.73	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A6A4LE10	1.6e-66	91.50	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of MELO3C003108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	1.3e-68	87.58	histone H2A 12	[more]
AT5G02560.2	1.5e-64	75.71	histone H2A 12	[more]
AT5G59870.1	2.4e-54	74.51	histone H2A 6	[more]
AT5G27670.1	2.8e-50	73.65	histone H2A 7	[more]
AT3G20670.1	7.8e-45	72.44	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 67..80 score: 89.46 coord: 81..95 score: 73.78 coord: 52..67 score: 86.43 coord: 109..127 score: 75.79
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 5.2E-78 score: 275.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 20..129 e-value: 2.69176E-66 score: 195.632
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 2.1E-12 score: 47.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..141 e-value: 2.3E-62 score: 210.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..129
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..132 e-value: 5.0E-18 score: 64.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 9..148
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..148
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003108.1	MELO3C003108.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity