MELO3C002812.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C002812.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionArmadillo-like helical
Locationchr12: 20055284 .. 20055559 (-)
RNA-Seq ExpressionMELO3C002812.jh1
SyntenyMELO3C002812.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATCATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAGCAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTGCAACATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

mRNA sequence

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATCATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAGCAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTGCAACATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

Coding sequence (CDS)

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATCATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAGCAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTGCAACATCTAGATTAAAGAAATTGGCTTCAACGACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

Protein sequence

MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLASTTTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Homology
BLAST of MELO3C002812.jh1 vs. NCBI nr
Match: TYK05541.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 1.41e-51
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
          MKGLAKESLMD IMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60

Query: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
          TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91

BLAST of MELO3C002812.jh1 vs. NCBI nr
Match: KAA0060939.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 5.73e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 556

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 557 TTT-QVKKAEDSSNNSSERNGNIMIRTTMTI 586

BLAST of MELO3C002812.jh1 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 157 bits (397), Expect = 6.90e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 573

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 574 TTT-QVKKAEDSSNNSSERNGNIMIRTTMTI 603

BLAST of MELO3C002812.jh1 vs. NCBI nr
Match: XP_004143023.2 (uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_018711 [Cucumis sativus])

HSP 1 Score: 156 bits (394), Expect = 1.85e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKKLAS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLAS 573

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGN MIRTTMTI
Sbjct: 574 TTT-QVKKAEDSSNNSSERNGNTMIRTTMTI 603

BLAST of MELO3C002812.jh1 vs. NCBI nr
Match: XP_038886260.1 (uncharacterized protein LOC120076487 [Benincasa hispida])

HSP 1 Score: 139 bits (351), Expect = 2.32e-36
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKM+E ANKRIKI YHAARMISKQMEATWLFAT+RLKKL S
Sbjct: 515 MKGLAKESLMDCIMFVNGGMKMEEAANKRIKIPYHAARMISKQMEATWLFATARLKKLTS 574

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMT 90
           TTT QVKKAEDSS NSSE NGNI IRTTMT
Sbjct: 575 TTT-QVKKAEDSSKNSSEGNGNI-IRTTMT 602

BLAST of MELO3C002812.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C0T4 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00490 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 6.81e-52
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
          MKGLAKESLMD IMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60

Query: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
          TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91

BLAST of MELO3C002812.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V5F7 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00720 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.77e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 556

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 557 TTT-QVKKAEDSSNNSSERNGNIMIRTTMTI 586

BLAST of MELO3C002812.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BA59 (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 3.34e-43
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 573

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 574 TTT-QVKKAEDSSNNSSERNGNIMIRTTMTI 603

BLAST of MELO3C002812.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LL28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 8.96e-43
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKKLAS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLAS 573

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTT QVKKAEDSSNNSSERNGN MIRTTMTI
Sbjct: 574 TTT-QVKKAEDSSNNSSERNGNTMIRTTMTI 603

BLAST of MELO3C002812.jh1 vs. ExPASy TrEMBL
Match: A0A6J1BPK8 (uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004666 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 4.05e-27
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60
           MKGLAKESLMDCIMFVNG MKM E  +KRIKI YHAARMISKQM+ TWLFA++RLKKLAS
Sbjct: 493 MKGLAKESLMDCIMFVNGGMKMAED-HKRIKIPYHAARMISKQMDGTWLFASARLKKLAS 552

Query: 61  TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
               +V+KAEDSSNNS ER+G  M+  TMT+
Sbjct: 553 V---KVEKAEDSSNNSHERHG--MLMRTMTV 577

BLAST of MELO3C002812.jh1 vs. TAIR 10
Match: AT5G43120.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKL 59
           +KGL++ESLMDCIMFVNGR         R  I Y+AA+MISKQMEATWLF  +R  KL
Sbjct: 512 IKGLSRESLMDCIMFVNGRC-------FRGNIPYYAAQMISKQMEATWLFEKARASKL 562

BLAST of MELO3C002812.jh1 vs. TAIR 10
Match: AT5G10200.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEG--ANKRIKILYHAARMISKQMEATWLFATSRLK 57
           M GLAKESL+D I+F+N   + ++   + ++ K+  +A R++ KQM A WLF  + LK
Sbjct: 486 MLGLAKESLLDAILFINECSQSNDPDLSMRQNKVPDYAERLVKKQMRAAWLFKEAALK 543

BLAST of MELO3C002812.jh1 vs. TAIR 10
Match: AT3G50030.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFA 52
           +KG  +ESLMDC+ FV+ R+K     +   +I Y+AA+MI KQM AT +F+
Sbjct: 448 LKGSTRESLMDCLAFVDHRVK----HSNTQRIPYYAAQMIRKQMSATCIFS 494

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05541.11.41e-5198.90Armadillo-like helical [Cucumis melo var. makuwa][more]
KAA0060939.15.73e-4394.51Armadillo-like helical [Cucumis melo var. makuwa][more]
XP_008444580.16.90e-4394.51PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo][more]
XP_004143023.21.85e-4294.51uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical ... [more]
XP_038886260.12.32e-3688.89uncharacterized protein LOC120076487 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0T46.81e-5298.90Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7V5F72.77e-4394.51Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5... [more]
A0A1S3BA593.34e-4394.51uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=... [more]
A0A0A0LL288.96e-4394.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1[more]
A0A6J1BPK84.05e-2773.63uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
Match NameE-valueIdentityDescription
AT5G43120.14.4e-1162.07ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
AT5G10200.13.6e-0541.38ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
AT3G50030.14.7e-0547.06ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..91
NoneNo IPR availablePANTHERPTHR46578:SF1ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR46578ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002812.jh1.t1MELO3C002812.jh1.t1mRNA