MELO3C002812 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002812
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Armadillo-like helical
Location	chr03: 28244510 .. 28244782 (+)
RNA-Seq Expression	MELO3C002812
Synteny	MELO3C002812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTGGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCATGCAGCAAGAATGATTAGCAAACAAATGGAAGCAACATGGCTTTTTGCAACCGCTAGATTAAAGAAAATGGCTTCAACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

mRNA sequence

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTGGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCATGCAGCAAGAATGATTAGCAAACAAATGGAAGCAACATGGCTTTTTGCAACCGCTAGATTAAAGAAAATGGCTTCAACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

Coding sequence (CDS)

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTGGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCCATATCATGCAGCAAGAATGATTAGCAAACAAATGGAAGCAACATGGCTTTTTGCAACCGCTAGATTAAAGAAAATGGCTTCAACAACAACTCAAGTGAAAAAAGCTGAAGATTCTTCTAACAACAGCAGTGAGAGGAATGGAAACATCATGATCAGAACAACCATGACTATATAA

Protein sequence

MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMASTTTQVKKAEDSSNNSSERNGNIMIRTTMTI

Homology

[Close]

BLAST of MELO3C002812 vs. NCBI nr
Match: KAA0060939.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 4.2e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 556

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 557 TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 586

[Close]

BLAST of MELO3C002812 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 4.2e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 573

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 574 TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 603

[Close]

BLAST of MELO3C002812 vs. NCBI nr
Match: XP_004143023.2 (uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_018711 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKK+AS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLAS 573

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGN MIRTTMTI
Sbjct: 574 TTTQVKKAEDSSNNSSERNGNTMIRTTMTI 603

[Close]

BLAST of MELO3C002812 vs. NCBI nr
Match: TYK05541.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
          MKGLAKESLMD IMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60

Query: 61 -TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91

[Close]

BLAST of MELO3C002812 vs. NCBI nr
Match: XP_038886260.1 (uncharacterized protein LOC120076487 [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 3.4e-34
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKM+E ANKRIKIPYHAARMISKQMEATWLFATARLKK+ S
Sbjct: 515 MKGLAKESLMDCIMFVNGGMKMEEAANKRIKIPYHAARMISKQMEATWLFATARLKKLTS 574

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMT 90
           TTTQVKKAEDSS NSSE NGNI IRTTMT
Sbjct: 575 TTTQVKKAEDSSKNSSEGNGNI-IRTTMT 602

[Close]

BLAST of MELO3C002812 vs. ExPASy TrEMBL
Match: A0A5A7V5F7 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00720 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 556

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 557 TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 586

[Close]

BLAST of MELO3C002812 vs. ExPASy TrEMBL
Match: A0A1S3BA59 (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-40
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 573

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 574 TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 603

[Close]

BLAST of MELO3C002812 vs. ExPASy TrEMBL
Match: A0A0A0LL28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKK+AS
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKLAS 573

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGN MIRTTMTI
Sbjct: 574 TTTQVKKAEDSSNNSSERNGNTMIRTTMTI 603

[Close]

BLAST of MELO3C002812 vs. ExPASy TrEMBL
Match: A0A5D3C0T4 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00490 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
          MKGLAKESLMD IMFVNG MKMDEGANKRIKI YHAARMISKQMEATWLFAT+RLKK+AS
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATSRLKKLAS 60

Query: 61 -TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
           TTTQVKKAEDSSNNSSERNGNIMIRTTMTI
Sbjct: 61 TTTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91

[Close]

BLAST of MELO3C002812 vs. ExPASy TrEMBL
Match: A0A6J1BPK8 (uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004666 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKMAS 60
           MKGLAKESLMDCIMFVNGGMKM E  +KRIKIPYHAARMISKQM+ TWLFA+ARLKK+AS
Sbjct: 493 MKGLAKESLMDCIMFVNGGMKMAED-HKRIKIPYHAARMISKQMDGTWLFASARLKKLAS 552

Query: 61  TTTQVKKAEDSSNNSSERNGNIMIRTTMTI 91
              +V+KAEDSSNNS ER+G  M+  TMT+
Sbjct: 553 --VKVEKAEDSSNNSHERHG--MLMRTMTV 577

[Close]

BLAST of MELO3C002812 vs. TAIR 10
Match: AT5G43120.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-12
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFATARLKKM 59
           +KGL++ESLMDCIMFVNG          R  IPY+AA+MISKQMEATWLF  AR  K+
Sbjct: 512 IKGLSRESLMDCIMFVNGRC-------FRGNIPYYAAQMISKQMEATWLFEKARASKL 562

[Close]

BLAST of MELO3C002812 vs. TAIR 10
Match: AT5G10200.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-07
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEG--ANKRIKIPYHAARMISKQMEATWLFATARLK 57
           M GLAKESL+D I+F+N   + ++   + ++ K+P +A R++ KQM A WLF  A LK
Sbjct: 486 MLGLAKESLLDAILFINECSQSNDPDLSMRQNKVPDYAERLVKKQMRAAWLFKEAALK 543

[Close]

BLAST of MELO3C002812 vs. TAIR 10
Match: AT3G50030.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLFA 52
           +KG  +ESLMDC+ FV+  +K     +   +IPY+AA+MI KQM AT +F+
Sbjct: 448 LKGSTRESLMDCLAFVDHRVK----HSNTQRIPYYAAQMIRKQMSATCIFS 494

The following BLAST results are available for this feature:

BLAST of MELO3C002812 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060939.1	4.2e-40	100.00	Armadillo-like helical [Cucumis melo var. makuwa]	[more]
XP_008444580.1	4.2e-40	100.00	PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo]	[more]
XP_004143023.2	3.5e-39	97.78	uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical ...	[more]
TYK05541.1	1.2e-34	93.41	Armadillo-like helical [Cucumis melo var. makuwa]	[more]
XP_038886260.1	3.4e-34	92.13	uncharacterized protein LOC120076487 [Benincasa hispida]	[more]

BLAST of MELO3C002812 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C002812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5F7	2.0e-40	100.00	Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3BA59	2.0e-40	100.00	uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=...	[more]
A0A0A0LL28	1.7e-39	97.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1	[more]
A0A5D3C0T4	5.7e-35	93.41	Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A6J1BPK8	4.1e-25	76.67	uncharacterized protein LOC111004666 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of MELO3C002812 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43120.1	8.8e-12	62.07	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein	[more]
AT5G10200.1	5.0e-07	44.83	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein	[more]
AT3G50030.1	9.4e-06	47.06	ARM-repeat/Tetratricopeptide repeat (TPR)-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..90
None	No IPR available	PANTHER	PTHR46578	ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR46578:SF1	ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002812.1	MELO3C002812.1	mRNA