MELO3C002688.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C002688.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr12: 21737783 .. 21738109 (-)
RNA-Seq ExpressionMELO3C002688.jh1
SyntenyMELO3C002688.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCCACTCAACACGTCACCGCCAAGTTGCCATCTACCACGCCACCGACCCCAACACGCCGTCGTATTCATACAACATCGGTATCCTCGTCCGCACCATATCCTCAATACCATTTAATCCAACCCGTACGTAATATTCAAACCAAAAAGATCCATCAAATCAACGGTCTATATTGCATTCATAATCTTAATCACTCCCACACGAAAAAAACACCCATCCGCGTAAAAGAACAATTTCGTCGTCATCCAGCCGTCACGCAAAGTAACGGAAGTTACGGAAGCCGTCAAATAAGGGCGGCGAAATTAAAGGGAAGCGTATTTTAG

mRNA sequence

ATGGGCTCCACTCAACACGTCACCGCCAAGTTGCCATCTACCACGCCACCGACCCCAACACGCCGTCGTATTCATACAACATCGGTATCCTCGTCCGCACCATATCCTCAATACCATTTAATCCAACCCGTACGTAATATTCAAACCAAAAAGATCCATCAAATCAACGGTCTATATTGCATTCATAATCTTAATCACTCCCACACGAAAAAAACACCCATCCGCGTAAAAGAACAATTTCGTCGTCATCCAGCCGTCACGCAAAGTAACGGAAGTTACGGAAGCCGTCAAATAAGGGCGGCGAAATTAAAGGGAAGCGTATTTTAG

Coding sequence (CDS)

ATGGGCTCCACTCAACACGTCACCGCCAAGTTGCCATCTACCACGCCACCGACCCCAACACGCCGTCGTATTCATACAACATCGGTATCCTCGTCCGCACCATATCCTCAATACCATTTAATCCAACCCGTACGTAATATTCAAACCAAAAAGATCCATCAAATCAACGGTCTATATTGCATTCATAATCTTAATCACTCCCACACGAAAAAAACACCCATCCGCGTAAAAGAACAATTTCGTCGTCATCCAGCCGTCACGCAAAGTAACGGAAGTTACGGAAGCCGTCAAATAAGGGCGGCGAAATTAAAGGGAAGCGTATTTTAG

Protein sequence

MGSTQHVTAKLPSTTPPTPTRRRIHTTSVSSSAPYPQYHLIQPVRNIQTKKIHQINGLYCIHNLNHSHTKKTPIRVKEQFRRHPAVTQSNGSYGSRQIRAAKLKGSVF
Homology
[Close]
BLAST of MELO3C002688.jh1 vs. NCBI nr
Match: KGN65593.1 (hypothetical protein Csa_020036 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 1.04e-06
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 1  MGSTQHVTAKLPSTTPPTPTRRRIHTTSVSSSAPYPQYHLIQPVRNIQTKKIHQINGLYC 60
          MGSTQ+VTAKL ST P        +TT+ S       Y++    R   T           
Sbjct: 1  MGSTQYVTAKLASTHP--------NTTTYS-------YNIGYLARATST----------- 60

Query: 61 IHNLNHSHTKKTPIRVKEQFRRHPAVTQSNGSYGSR 96
             +  +  ++TPIRVKEQ RRHPAVTQS+ SYGSR
Sbjct: 61 ---IPFNPNRRTPIRVKEQVRRHPAVTQSDESYGSR 67

[Close]
BLAST of MELO3C002688.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LV13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467130 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.03e-07
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 1  MGSTQHVTAKLPSTTPPTPTRRRIHTTSVSSSAPYPQYHLIQPVRNIQTKKIHQINGLYC 60
          MGSTQ+VTAKL ST P        +TT+ S       Y++    R   T           
Sbjct: 1  MGSTQYVTAKLASTHP--------NTTTYS-------YNIGYLARATST----------- 60

Query: 61 IHNLNHSHTKKTPIRVKEQFRRHPAVTQSNGSYGSR 96
             +  +  ++TPIRVKEQ RRHPAVTQS+ SYGSR
Sbjct: 61 ---IPFNPNRRTPIRVKEQVRRHPAVTQSDESYGSR 67

The following BLAST results are available for this feature:
BLAST of MELO3C002688.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65593.11.04e-0642.71hypothetical protein Csa_020036 [Cucumis sativus][more]
BLAST of MELO3C002688.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C002688.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV135.03e-0742.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467130 PE=4 SV=1[more]
BLAST of MELO3C002688.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002688.jh1.t1MELO3C002688.jh1.t1mRNA