MELO3C002621 (gene) Melon (DHL92) v4

Overview
NameMELO3C002621
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr12: 21325452 .. 21325850 (-)
RNA-Seq ExpressionMELO3C002621
SyntenyMELO3C002621
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATCCACACGAAGAAGCCTCATATGAGCAGCACTACCACAAGCACTTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGGGAAGAACCTAGTTTGGGTTCGATTGAAACACAAGATAGGAAGATCAAAGTAGTCAACCACGGATTCGAGTTCGGCGGTCCGACGTGTCGAGGTTCAAGTGTGAGCGATTATATTGGAGAGAGATCATCGCCATACATTGTAAGAAACAACAGTATAAGAAGGGGAAGCAAAAAGATAAGGGAGGAAAAGGAAGAATCAAGGTGGAGGGTTGTCTGGTCGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGCAAGCCCAATGTGGTTCAACCCCGACCCATTCAAGGGCCTTCCTCATGA

mRNA sequence

ATGGGAATCCACACGAAGAAGCCTCATATGAGCAGCACTACCACAAGCACTTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGGGAAGAACCTAGTTTGGGTTCGATTGAAACACAAGATAGGAAGATCAAAGTAGTCAACCACGGATTCGAGTTCGGCGGTCCGACGTGTCGAGGTTCAAGTGTGAGCGATTATATTGGAGAGAGATCATCGCCATACATTGTAAGAAACAACAGTATAAGAAGGGGAAGCAAAAAGATAAGGGAGGAAAAGGAAGAATCAAGGTGGAGGGTTGTCTGGTCGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGCAAGCCCAATGTGGTTCAACCCCGACCCATTCAAGGGCCTTCCTCATGA

Coding sequence (CDS)

ATGGGAATCCACACGAAGAAGCCTCATATGAGCAGCACTACCACAAGCACTTGGGTCAACTCTCTTTCCTTTTCTGGCTACTTGAATTCCAAAGACCGGGAAGAACCTAGTTTGGGTTCGATTGAAACACAAGATAGGAAGATCAAAGTAGTCAACCACGGATTCGAGTTCGGCGGTCCGACGTGTCGAGGTTCAAGTGTGAGCGATTATATTGGAGAGAGATCATCGCCATACATTGTAAGAAACAACAGTATAAGAAGGGGAAGCAAAAAGATAAGGGAGGAAAAGGAAGAATCAAGGTGGAGGGTTGTCTGGTCGTTTGTTTTGCCGTGTAGGGAGTGCCGAGCTAGCAAGCCCAATGTGGTTCAACCCCGACCCATTCAAGGGCCTTCCTCATGA

Protein sequence

MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGPTCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPNVVQPRPIQGPSS
Homology
BLAST of MELO3C002621 vs. NCBI nr
Match: KAA0057006.1 (hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK26433.1 hypothetical protein E5676_scaffold861G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60
           MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP
Sbjct: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60

Query: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN 120
           TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN
Sbjct: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN 120

Query: 121 VVQPRPIQGPSS 133
           VVQPRPIQGPSS
Sbjct: 121 VVQPRPIQGPSS 132

BLAST of MELO3C002621 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_013090 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60
           M IH KKPHMSS TTSTW+NSLSFSGYLNSKDR++PSLGSIET DRKIKVV+HGFEF  P
Sbjct: 1   MRIHRKKPHMSS-TTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEF-SP 60

Query: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESR---WRVVWSFVLPCRECRAS 120
           TC GSSVSDY GERSS YIVRNNSI+RGSKKI EEK+ESR   WR+ W FVLPCRECRA 
Sbjct: 61  TCGGSSVSDY-GERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRAR 120

Query: 121 KPNVVQPRPIQGPS 132
           KP+VVQPRPIQ PS
Sbjct: 121 KPSVVQPRPIQVPS 131

BLAST of MELO3C002621 vs. NCBI nr
Match: KAG6573282.1 (hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-15
Identity = 61/142 (42.96%), Postives = 83/142 (58.45%), Query Frame = 0

Query: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIK----VVNHGFE 60
           M +H+K     S+++S+   SLSFSG++ SKDR+   +  I T D++ +    V NH   
Sbjct: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKI--IRTPDQRFEFGSSVANH--- 60

Query: 61  FGG-------PTCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESR---WRVVWS 120
           +GG       P    + VS          +VRN+SIRRG ++IREE+EES    W V  S
Sbjct: 61  YGGQSLVLPRPRPEQAQVSCKRQLERDELMVRNHSIRRGGRRIREEEEESTWSGWSVFRS 120

Query: 121 FVLPCRECRASKPNVVQPRPIQ 129
           FV PCRECRASKP VV+ RP+Q
Sbjct: 121 FVSPCRECRASKPAVVEARPVQ 137

BLAST of MELO3C002621 vs. NCBI nr
Match: XP_022139818.1 (uncharacterized protein LOC111010640 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-15
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 0

Query: 1   MGIHTKKP-----HMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGF 60
           MGIH K P       S +++ ++ +SLSF+ YL  KDRE  S G I+T D+       GF
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDREPNSGGLIKTGDQ-------GF 67

Query: 61  EFGGPTC------RGSS---VSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVW- 120
           EFG   C       GS    + D  G+R    +VRNNSIRRG ++I++E+EES     W 
Sbjct: 68  EFGPICCDDHDGGSGSGRRRIRDDDGQRW--LVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 ----SFVLPCRECRASKPNVV---QPRPIQ 129
               SFV PCRECRASKP+ V   Q  PIQ
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQ 148

BLAST of MELO3C002621 vs. ExPASy TrEMBL
Match: A0A5D3DS79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00970 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.1e-70
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60
           MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP
Sbjct: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60

Query: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN 120
           TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN
Sbjct: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVWSFVLPCRECRASKPN 120

Query: 121 VVQPRPIQGPSS 133
           VVQPRPIQGPSS
Sbjct: 121 VVQPRPIQGPSS 132

BLAST of MELO3C002621 vs. ExPASy TrEMBL
Match: A0A0A0LXF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 0

Query: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60
           M IH KKPHMSS TTSTW+NSLSFSGYLNSKDR++PSLGSIET DRKIKVV+HGFEF  P
Sbjct: 1   MRIHRKKPHMSS-TTSTWLNSLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEF-SP 60

Query: 61  TCRGSSVSDYIGERSSPYIVRNNSIRRGSKKIREEKEESR---WRVVWSFVLPCRECRAS 120
           TC GSSVSDY GERSS YIVRNNSI+RGSKKI EEK+ESR   WR+ W FVLPCRECRA 
Sbjct: 61  TCGGSSVSDY-GERSSAYIVRNNSIKRGSKKIWEEKDESRWSGWRIFWLFVLPCRECRAR 120

Query: 121 KPNVVQPRPIQGPS 132
           KP+VVQPRPIQ PS
Sbjct: 121 KPSVVQPRPIQVPS 131

BLAST of MELO3C002621 vs. ExPASy TrEMBL
Match: A0A6J1CGL7 (uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010640 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 0

Query: 1   MGIHTKKP-----HMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGF 60
           MGIH K P       S +++ ++ +SLSF+ YL  KDRE  S G I+T D+       GF
Sbjct: 8   MGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDREPNSGGLIKTGDQ-------GF 67

Query: 61  EFGGPTC------RGSS---VSDYIGERSSPYIVRNNSIRRGSKKIREEKEESRWRVVW- 120
           EFG   C       GS    + D  G+R    +VRNNSIRRG ++I++E+EES     W 
Sbjct: 68  EFGPICCDDHDGGSGSGRRRIRDDDGQRW--LVVRNNSIRRGGRRIKDEEEESSSSTSWS 127

Query: 121 ----SFVLPCRECRASKPNVV---QPRPIQ 129
               SFV PCRECRASKP+ V   Q  PIQ
Sbjct: 128 SVFRSFVSPCRECRASKPSAVIEAQAHPIQ 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0057006.11.3e-69100.00hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK2643... [more]
KGN64696.12.9e-5081.34hypothetical protein Csa_013090 [Cucumis sativus][more]
KAG6573282.16.8e-1542.96hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139818.18.9e-1544.00uncharacterized protein LOC111010640 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A5D3DS796.1e-70100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXF91.4e-5081.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1[more]
A0A6J1CGL74.3e-1544.00uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002621.1MELO3C002621.1mRNA