MELO3C002233 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002233
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	chr12: 24022076 .. 24023819 (-)
RNA-Seq Expression	MELO3C002233
Synteny	MELO3C002233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACAAGAAAGTTACTAACTTCAAATGAACACAAGAAGGTACCCTACGATTCCGTGGCCGCAACTCAAACATTTGTCCACTTGTCTGCTAATAATTGGCTGAATGGGCAGTAAAAAGCCGCATGCATAATTTTATTGGGCAAATAGAAAAATTATAAAAAAATATATATAATCCCGAAATTCTCATCTTCTTCACCCCCACAAGCTCTCCGATTCAGCCGCGTTTCAGCCTCTTCGATCCGCTTCCTCCGCCGGTATTCATCAATGGCTCCTTCCTCCACCCTTAGTCGATGGCTGAGGCCTGAGGTAATCCATAATCATTCAGATCTGTCCTCTAATTTTTCTCCGGTTCTGTATTGTTATTGATTGATCTCCGTTTCCGTGCCGTTTAATCACCTCGATCAATTCCTTTTTTAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCTGTCGGAATCTGCGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGGTCTCTCCCTGTTTTCTCTAAACTTTAACTTTTCATTTGTGTTTTTAAGTTCGATTTTTTTTTTCTTTTTCTTTTTGTGTGGTTTAATCTGCATATTCTCGTGGTATAAATATATTATGATACCAGATTTGAGGATGAGTAATAGTAAGTTTTGAACATAAACCTACCTTTGACCCTTTGCTATCCCTGTGATTAGTTCCAATAGGATGAGTATAGATAAATGATGCATGCTAACTAATGTATAAACTGGTGCTTAAATTAATGGATTTAATCAGTCAAATTGTTGATTGCTGTGGGATAGTAACTGCAAAGAATCTTAGGGTTTTCTTTTTGTAGTTTTTTGCTAACATAGTCAGTAGACCTGGCCAAGAATATATGTCAAGGTGAAAATTGTTATGAAATTAGTTTCAAATCCCAAACAAACGAAAACTTTAATTACCAACATCTGCTTGTTGAATTTGACAAAACCTTTTTGGTAACCAATTGGTTTATAGGTTTTAGTTTCTGAAAATTAAACTTATAAACATCTCCTTCACCTTTAATTTTTCCTATTTTCAAAAATAAATTAATAATTTGAAGTATACTTAATTTTCAAAAACCAAAAGCCAAAAATCAAATGGTTATCAAAAAGACTGTAGTGATTGGTTTTCCCCCGTACTTCTTATTCATCTTAATCTGTGAGGGCTTGTATCTCTGTATGCCCTTGTCAAAAGGGATAAATTGCCTCCATTGAAATGGGGTATGTTTTGTTTCCTTAAATAAGAGTTTTGTAAACTGATTAGTACATCGTTTCTTTTAATCATTTGAGAATCAGAGTGAGCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAGTTTGTACGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACTGACCCAAGTCGAAACTAAGAAGGCTATGAATGAATTACACATTAGATTGGATGTAGATTTGAATTTGAATTGTTGGTGGATTGGTGGCTGTAAAAGTTAAAACTATGCTGCTTTTACGTTTGCTTTTATTGTTCGTTTGAGAAAGTTTGAAAACGATGGATCGATAAAATAAACCATTCTGAACCAAAATTTAATTTCAGTTATCATGAAATTCTTACTTTGATCTTTGCACATCGACTGATTCTATGCTCTATGTTATAACTGTGAAATGGAGCTTTAGATTTTTGG

mRNA sequence

ATCACAAGAAAGTTACTAACTTCAAATGAACACAAGAAGGTACCCTACGATTCCGTGGCCGCAACTCAAACATTTGTCCACTTGTCTGCTAATAATTGGCTGAATGGGCAGTAAAAAGCCGCATGCATAATTTTATTGGGCAAATAGAAAAATTATAAAAAAATATATATAATCCCGAAATTCTCATCTTCTTCACCCCCACAAGCTCTCCGATTCAGCCGCGTTTCAGCCTCTTCGATCCGCTTCCTCCGCCGGTATTCATCAATGGCTCCTTCCTCCACCCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCTGTCGGAATCTGCGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGAGCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAGTTTGTACGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACTGACCCAAGTCGAAACTAAGAAGGCTATGAATGAATTACACATTAGATTGGATGTAGATTTGAATTTGAATTGTTGGTGGATTGGTGGCTGTAAAAGTTAAAACTATGCTGCTTTTACGTTTGCTTTTATTGTTCGTTTGAGAAAGTTTGAAAACGATGGATCGATAAAATAAACCATTCTGAACCAAAATTTAATTTCAGTTATCATGAAATTCTTACTTTGATCTTTGCACATCGACTGATTCTATGCTCTATGTTATAACTGTGAAATGGAGCTTTAGATTTTTGG

Coding sequence (CDS)

ATGGCTCCTTCCTCCACCCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCTCTTTTCGCGGCGGTAGGAGTGGCTGTCGGAATCTGCGGATTTCAGTTAATCCGTAACATCTGCATCAATCCTGAAGTCAGAGTGAGCAAGGAGAATAGGGCTGCTGGAGTGTTGGATAACTTTGCTGAGGGAGAGAAGTATTCTGAACATTTCCTGAGGAAGTTTGTACGCAACAAGTCCCCAGAAATTATGCCATCGATCAACAACTTCTTCACTGACCCAAGTCGAAACTAA

Protein sequence

MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN

Homology

[Close]

BLAST of MELO3C002233 vs. NCBI nr
Match: XP_008437938.1 (PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 uncharacterized protein E6C27_scaffold80G00410 [Cucumis melo var. makuwa] >TYJ99130.1 uncharacterized protein E5676_scaffold248G003360 [Cucumis melo var. makuwa])

HSP 1 Score: 194.9 bits (494), Expect = 3.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of MELO3C002233 vs. NCBI nr
Match: XP_038893556.1 (uncharacterized protein LOC120082448 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of MELO3C002233 vs. NCBI nr
Match: KGN64280.1 (hypothetical protein Csa_013651 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 5.9e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of MELO3C002233 vs. NCBI nr
Match: XP_004152455.2 (uncharacterized protein LOC101218501 isoform X2 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 5.9e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
           MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 105

Query: 61  GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
           GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 106 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 139

[Close]

BLAST of MELO3C002233 vs. NCBI nr
Match: XP_031736912.1 (uncharacterized protein LOC101218501 isoform X1 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1   MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEV--RVSKENRAAGVLDNF 60
           MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEV  RV+KENRAAGVLDNF
Sbjct: 46  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRIRVTKENRAAGVLDNF 105

Query: 61  AEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
           AEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 106 AEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 141

[Close]

BLAST of MELO3C002233 vs. ExPASy TrEMBL
Match: A0A5A7UIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003360 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of MELO3C002233 vs. ExPASy TrEMBL
Match: A0A1S3AVT0 (uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE
Sbjct: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 94

[Close]

BLAST of MELO3C002233 vs. ExPASy TrEMBL
Match: A0A0A0LQT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAPSS LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1  MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKYSEHFLRKFVRNKSPEIMPSINNFFTDP+RN
Sbjct: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

[Close]

BLAST of MELO3C002233 vs. ExPASy TrEMBL
Match: A0A6J1C941 (uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009092 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAP ST+SRWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRVSKENR+AGVLDNFAE
Sbjct: 1  MAP-STVSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVSKENRSAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of MELO3C002233 vs. ExPASy TrEMBL
Match: A0A6J1E888 (uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC111431708 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 88/94 (93.62%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MAPSSTLSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAE 60
          MAP ST++RWLRPEVYPLFAAVGVAVGICGFQL+RNICINPEVRV+KENRAAGVLDNFAE
Sbjct: 1  MAP-STVNRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAE 60

Query: 61 GEKYSEHFLRKFVRNKSPEIMPSINNFFTDPSRN 95
          GEKY+EHFLRKFVRNKSPEIMPSINNFFTDPSRN
Sbjct: 61 GEKYTEHFLRKFVRNKSPEIMPSINNFFTDPSRN 93

[Close]

BLAST of MELO3C002233 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 147.9 bits (372), Expect = 4.1e-36
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 8  SRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEKYSEH 67
          SRWLRPEVYPLFAA GVAVGIC F LIRNI  NPEVR +KENRAAG+LDN AEGEKY E+
Sbjct: 3  SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query: 68 FLRKFVRNKSPEIMPSINNFFTDPS 93
          FLRKFVRNK PEIMP +N FFTDP+
Sbjct: 63 FLRKFVRNKKPEIMPGLNKFFTDPT 87

[Close]

BLAST of MELO3C002233 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-22
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 7  LSRWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVSKENRAAGVLDNFAEGEKYSE 66
          + RW+RPEVYPL  A+G    +  FQL RN  +NP+ R++KE+R  G+L+N  EGEKY++
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 67 HFLRKFVRNKSPEIMPSINNFFT 90
          H  RK++R + P++MPS+N FF+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of MELO3C002233 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C002233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437938.1	3.1e-46	100.00	PREDICTED: uncharacterized protein LOC103483212 [Cucumis melo] >KAA0055200.1 unc...	[more]
XP_038893556.1	3.5e-45	96.81	uncharacterized protein LOC120082448 [Benincasa hispida]	[more]
KGN64280.1	5.9e-45	96.81	hypothetical protein Csa_013651 [Cucumis sativus]	[more]
XP_004152455.2	5.9e-45	96.81	uncharacterized protein LOC101218501 isoform X2 [Cucumis sativus]	[more]
XP_031736912.1	1.9e-43	94.79	uncharacterized protein LOC101218501 isoform X1 [Cucumis sativus]	[more]

BLAST of MELO3C002233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIX5	1.5e-46	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVT0	1.5e-46	100.00	uncharacterized protein LOC103483212 OS=Cucumis melo OX=3656 GN=LOC103483212 PE=...	[more]
A0A0A0LQT3	2.9e-45	96.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045780 PE=4 SV=1	[more]
A0A6J1C941	1.6e-43	94.68	uncharacterized protein LOC111009092 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1E888	3.5e-43	93.62	uncharacterized protein LOC111431708 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]

BLAST of MELO3C002233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	4.1e-36	81.18	B12D protein	[more]
AT3G29970.1	4.4e-22	49.40	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 12..79 e-value: 8.9E-26 score: 89.5
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 5..93
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 5..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002233.1	MELO3C002233.1	mRNA