MELO3C002108.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C002108.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr12: 26172515 .. 26172972 (-)
RNA-Seq Expression	MELO3C002108.jh1
Synteny	MELO3C002108.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCGATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCAAGAAAAAAGAAAGAAAGGGAGATTGTAAAAATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGAAAAATAGAGAACCCCCTTCTTCTTCTTTTTCATCTATAGGAAACAAATTATGTTTTGGATTTTTAAAGCCATGAGAGAATTAAACAGAGAGAGCTTGTTTTTGAAGATACTGACATCAATTTTGTTACATTTTAATTGTGATTTAGCAGCCTTCAGTTTA

mRNA sequence

ACTCGATTGGGTTTCTTCATTATATTCTTTGAAACCCATCTCAAGAAAAAAGAAAGAAAGGGAGATTGTAAAAATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGAAAAATAGAGAACCCCCTTCTTCTTCTTTTTCATCTATAGGAAACAAATTATGTTTTGGATTTTTAAAGCCATGAGAGAATTAAACAGAGAGAGCTTGTTTTTGAAGATACTGACATCAATTTTGTTACATTTTAATTGTGATTTAGCAGCCTTCAGTTTA

Coding sequence (CDS)

ATGGCAAGAATAATGAGAGAAATTAGCGGTCAAAATGGAAGCTTTGGGCTCGCCGGCGGTGAAACTTATTGGTTGTTTTGGGTGGCTCTTTTTACACTCTGCATAATTTCCACTGTAATTTTCTCTTGCTCCGATGGCATGTCGAAAGACCGGAATTCCACGGTGGACGTTGAGCTTTACGGCGGCGGTTGCGCTGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of MELO3C002108.jh1 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 1.01e-44
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
           MAR+MREIS QNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 88

Query: 61  GGGCAAGCGAGCGA 74
           GGGCAAGCGAGCGA
Sbjct: 89  GGGCAAGCGAGCGA 102

[Close]

BLAST of MELO3C002108.jh1 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121 bits (303), Expect = 4.26e-34
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMS-KDRNSTVDVEL 60
          MAR+MRE   QNGSFGLAG + Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREFGSQNGSFGLAG-DIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60

Query: 61 YGGGCAAGCGAGCGA 74
          YG GCAAGCGAGCGA
Sbjct: 61 YGAGCAAGCGAGCGA 74

[Close]

BLAST of MELO3C002108.jh1 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 2.15e-24
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          MAR++ EI   +GSFGL+G +   LF  ALFTLCIIS + FSCSDG+SK+RNST DVELY
Sbjct: 1  MARLIGEIGSVDGSFGLSG-DISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60

Query: 61 GGGCAAGCGA 70
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of MELO3C002108.jh1 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 88.6 bits (218), Expect = 4.02e-21
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of MELO3C002108.jh1 vs. NCBI nr
Match: POO01897.1 (hypothetical protein TorRG33x02_021890 [Trema orientale])

HSP 1 Score: 87.8 bits (216), Expect = 8.12e-21
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F + L  TLCI+STVIFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.12e-45
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          MAR+MREIS QNGSFGLAGGETYWLFWVALFTLCIIST+IFSCSDGMSKDRNSTVDVELY
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.95e-21
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F++ L  TLCI+ST+IFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL
Match: A0A2P5FVW4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.93e-21
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALF-TLCIISTVIFSCSDGMSKDRNSTVDVEL 60
          M R+ RE +G +G  G +   T+ +F + L  TLCI+STVIFSC+DG+SK++ S  D EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFLLGLLVTLCILSTVIFSCTDGVSKEKTSQADTEL 60

Query: 61 YGGGCAAGCGAGCG 73
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.89e-21
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          M R+ R+++  +GS    G   + + W+AL  +CIIS +IFSC+DG+SK++ ST D ELY
Sbjct: 1  MVRLWRDLASVHGS----GSAGFVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.34e-20
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MARIMREISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELY 60
          M R+ RE++  +G  G   G         L TLCI+ST+IFSC+DG+SK++ S  D ELY
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 61 GGGCAAGCGAGCGA 74
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 74

[Close]

BLAST of MELO3C002108.jh1 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-06
Identity = 25/66 (37.88%), Postives = 33/66 (50.00%), Query Frame = 0


Query: 8  ISGQNGSFGLAGGETYWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGCAAG 67
          + G+        GE     W A+    +I+ VIFSCSD  SK   +    ++ G  CAAG
Sbjct: 2  VRGELAVIAAGNGEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAG 61

Query: 68 CGAGCG 74
          CG GCG
Sbjct: 62 CGGGCG 64

[Close]

BLAST of MELO3C002108.jh1 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 23 YWLFWVALFTLCIISTVIFSCSDGMSKDRNSTVDVELYGGGC-AAGCGAGCG 74
          + + ++A+   CI+S ++FSC+DG+S D  +T      GGGC  AGCG GCG
Sbjct: 25 FHVVFLAVIGCCILSALLFSCADGVS-DNRATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of MELO3C002108.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652552.1	1.01e-44	95.95	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6584341.1	4.26e-34	82.67	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572949.1	2.15e-24	70.00	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON38946.1	4.02e-21	56.76	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]
POO01897.1	8.12e-21	58.11	hypothetical protein TorRG33x02_021890 [Trema orientale]	[more]

BLAST of MELO3C002108.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C002108.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	2.12e-45	95.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A2P5AQX4	1.95e-21	56.76	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]
A0A2P5FVW4	3.93e-21	58.11	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021890 PE=4 SV...	[more]
A0A6P3ZT85	4.89e-21	55.41	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A803R005	6.34e-20	55.41	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MELO3C002108.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	2.7e-06	37.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	5.0e-05	44.23	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199:SF2	MEMBRANE LIPOPROTEIN-RELATED	coord: 1..74
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002108.jh1.t1	MELO3C002108.jh1.t1	mRNA