MELO3C002084 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002084
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr12: 24991237 .. 24991695 (+)
RNA-Seq Expression	MELO3C002084
Synteny	MELO3C002084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGAGGAGAAGAAGAACTAAGAAGAGGCTGTCTCGGGGGAGTTGTTTTGTTTGTTCATCGTGTTTTACGCTTAACTTTGCTAATCCCTTTTGTAAATATTAATCGTAAAATAATAA

mRNA sequence

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGAGGAGAAGAAGAACTAAGAAGAGGCTGTCTCGGGGGAGTTGTTTTGTTTGTTCATCGTGTTTTACGCTTAACTTTGCTAATCCCTTTTGTAAATATTAATCGTAAAATAATAA

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGCGGAGGAGAACGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGAAGAAGATAAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGCGGCGGGGGTGGAGGAACCGTCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGATGTGGCTTTGCGGTACTTGAAAGGGAAGAGACTGCCGGAGAAAAGAACGACGACGGGTGAGACGGCGGTGGTTGGGGAAAATAAGGAACTGAATTTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFYAILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN

Homology

[Close]

BLAST of MELO3C002084 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 5.0e-27
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRKEMS  E GGVVEEMKRRKKKK K    +EEE++E   AA VEEPSTEEVEEFY
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIK----KEEEKKEAVAAAEVEEPSTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN 111
           AILRRMD ALRYLKGKR+PE+RTT GETAV  ENKE  LNLNEVPSDSSN
Sbjct: 61  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKE--LNLNEVPSDSSN 104

[Close]

BLAST of MELO3C002084 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 67/113 (59.29%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRK+MS  E         +  K+ KK RKEE E          +EEP+TEEVEEFY
Sbjct: 1   MEREKRKKMSPGE---------KETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKE---LNLNLNEVPSDSSN 111
           AILRRMDVALRYLKGKR+ E+R TT ETAVVG  K      LNLNEVP+DS+N
Sbjct: 61  AILRRMDVALRYLKGKRVVERR-TTAETAVVGTGKGQEIQELNLNEVPADSTN 103

[Close]

BLAST of MELO3C002084 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MEREKRKEMSAEENGGVVEEMKRRKKKKKKIRKEEEEEEEEEKEAAGVEEPSTEEVEEFY 60
           MEREKRKEMS  E GGVVEEMKRRKKKK K    +EEE++E   AA VEEPSTEEVEEFY
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIK----KEEEKKEAVAAAEVEEPSTEEVEEFY 60

Query: 61  AILRRMDVALRYLKGKRLPEKRTTTGETAVVGENKELNLNLNEVPSDSSN 111
           AILRRMD ALRYLKGKR+PE+RTT GETAV  ENKE  LNLNEVPSDSSN
Sbjct: 61  AILRRMDEALRYLKGKRVPERRTTMGETAVAVENKE--LNLNEVPSDSSN 104

The following BLAST results are available for this feature:

BLAST of MELO3C002084 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C002084 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64116.1	5.0e-27	79.09	hypothetical protein Csa_013670 [Cucumis sativus]	[more]
KAG6584363.1	1.8e-13	59.29	hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C002084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR0	2.4e-27	79.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1	[more]

BLAST of MELO3C002084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002084.1	MELO3C002084.1	mRNA