MELO3C002060.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C002060.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ribonucloprotein
Location	chr12: 26537387 .. 26538921 (-)
RNA-Seq Expression	MELO3C002060.jh1
Synteny	MELO3C002060.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGACGAAAGCCAAAAACCCAAGCGTAGCGGTCTCCGTCGTCGTCGTCAAAATCTCATTTTTCTCCGGCAGTTCCATCTTCAAATCCTCTTACGGAGGCAATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGGTATACCATCTCGTTTACAATTTTTTTTGGAGTTTTGAAGCTGTTTTTGATTGTATAGAGGAGGTTTGTGTTGGAATTAGTACGATTGCTTTCGTTGCCCTCAACCGATGGGTGAAACTGGTTGAATCTGGAAGCTTTTTTTGTTCTTGATAGATTTGGTTTTTGTATTAGATATGAAAAACATTTCGTCTTAAAACATTCGTCTGTGTTCTTTCAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGGTAACTGCTGCTATGAATTTTATCCTAATTTTTCGCTTGCATTGATTAATATGATGCTAAAGATAGAACAATGGCGAAGGAATTAGGAATTATGGAATATTAATATAATTCCAATAGTCTTTTATATTCATTTTCATTATTTTGGGATGGATTGAAATCAAAACAAGCCGTTGGGAAATCTATATATATAATGTAATGCACGAAATTCCTTCTACTATATGTTATATTGAATTGCTTTTTTGCCCCTTCATCTTTTGTCCGCTGCAATGCAGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGTAAGTGATGGCTATTTCAACCTTCTCAGGAATGCTTTGATTGTTTGTTGTCGTGTGTTACCTGAATAAGTTGAGAAATGAGATAAGTGTAATGGGTGCATATTTGTTCTTTATCTACTCTGAACTACTTGAGTTTGTAGAGCATAATTAAGTGTAGGAGGTTGCAAAGCTTAACACCAAGTTCCTAAGGATCCTTAAAACTTTTCTCAACCATCTATGCCATGATTCTTGTTCTTGTGAAAATAATCTGACAGACGTTAATCGTGTTTGTTATCTAGGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGAAAAGTAAAGTTGTTTTCTTTAACTTCTCTCAATGTACTTGTAGCATTTCTCTTCAAACTGGCTAGTGTACTCTGTTTTACCCTCAAATTTGTTTGGTCTTATGCCATTTCTACTCAATCATCTCTCCCCAATATTAATATATATATATATATATATATATATATATATATATATAACTTATTCCAAA

mRNA sequence

AGAGACGAAAGCCAAAAACCCAAGCGTAGCGGTCTCCGTCGTCGTCGTCAAAATCTCATTTTTCTCCGGCAGTTCCATCTTCAAATCCTCTTACGGAGGCAATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGAAAAGTAAAGTTGTTTTCTTTAACTTCTCTCAATGTACTTGTAGCATTTCTCTTCAAACTGGCTAGTGTACTCTGTTTTACCCTCAAATTTGTTTGGTCTTATGCCATTTCTACTCAATCATCTCTCCCCAATATTAATATATATATATATATATATATATATATATATATATATAACTTATTCCAAA

Coding sequence (CDS)

ATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGA

Protein sequence

MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF

Homology

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BLAST of MELO3C002060.jh1 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (772), Expect = 6.25e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

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BLAST of MELO3C002060.jh1 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 294 bits (753), Expect = 4.93e-100
Identity = 154/159 (96.86%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDK+KEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKAD++QVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYEQVVAEVSELTSTLF 159

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BLAST of MELO3C002060.jh1 vs. NCBI nr
Match: XP_004137455.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis sativus] >KGN64091.1 hypothetical protein Csa_013891 [Cucumis sativus])

HSP 1 Score: 291 bits (745), Expect = 7.90e-99
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSR KDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

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BLAST of MELO3C002060.jh1 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (741), Expect = 3.33e-98
Identity = 151/159 (94.97%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VL+QTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS++F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSVF 159

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BLAST of MELO3C002060.jh1 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 289 bits (739), Expect = 6.72e-98
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

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BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-54
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +++
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

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BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34
Identity = 76/156 (48.72%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDK--EKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K  ++ K  +  + ++ A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPT 120
           KEVVK++R+G+KGL VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL  AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSEL 155
             V +    NK + G  ++E+ K  F++VV EV  L
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156

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BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-29
Identity = 68/154 (44.16%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K     +++    L AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVK++R+G+KGL ++AG+ISP+DVI+H+P+LCE++++ Y+Y  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSEL 155
           V++     K ++   E+   K  +++++ EV  L
Sbjct: 121 VMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152

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BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot
Match: Q6PBV6 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN=nhp2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 16  EKEKKKLLA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCV 75
           EK  ++L+A + PIA PLA +KL K+  K V+KAA+ K ++RGVKEV K I +G+ G+ V
Sbjct: 18  EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVV 77

Query: 76  IAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGS 135
            AG+  PIDV  H+PI+CE+  + Y YVPSK DL ++  +KRPTC +++  KP+      
Sbjct: 78  FAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KPH------ 137

Query: 136 TEQEKLKADFDQVVAEVSEL 155
              ++ K  +D+ V EV+ L
Sbjct: 138 ---DEYKEAYDECVEEVTSL 146

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BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot
Match: Q9CRB2 (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus OX=10090 GN=Nhp2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 61/155 (39.35%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 4   DSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVK 63
           +SEA+     ++   K+ L+ L PIA+PLA ++L ++  K ++KA + K ++RGVKEV K
Sbjct: 10  ESEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQK 69

Query: 64  SIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLV 123
            + +G+KG+ V+AG+  PI+V  H+P+LCE+ ++ YVY+PSK DL  A  +KRPTC ++V
Sbjct: 70  FVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV 129

Query: 124 QTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTL 159
             KP+         E+ +  +D+ + EV  L + L
Sbjct: 130 --KPH---------EEYQETYDKCLEEVQALPTPL 153

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BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 3.02e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 301 bits (772), Expect = 3.02e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 3.83e-99
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKSR KDKEKEKK LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKEKK-LLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEES+IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

[Close]

BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 3.25e-98
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VL+QTKPNKGELGSTEQEKLKA+FDQVV+EVSELTS++F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 2.67e-97
Identity = 150/159 (94.34%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKS  KDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159
           VL+QTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS++F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

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BLAST of MELO3C002060.jh1 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-56
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +++
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of MELO3C002060.jh1 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-56
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKS QK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEE+ + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTL 159
           VLV  KP KG+L + E  KLK D++QV  ++ EL +++
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of MELO3C002060.jh1 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of MELO3C002060.jh1 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of MELO3C002060.jh1 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-13
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  YK LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK+    
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

The following BLAST results are available for this feature:

BLAST of MELO3C002060.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454886.1	6.25e-103	100.00	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_038894923.1	4.93e-100	96.86	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]
XP_004137455.1	7.90e-99	98.11	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis sativus] >KGN640...	[more]
XP_023541121.1	3.33e-98	94.97	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_022955313.1	6.72e-98	94.34	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]

BLAST of MELO3C002060.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	1.1e-54	72.15	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	8.2e-34	48.72	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	6.1e-29	44.16	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q6PBV6	1.3e-23	44.29	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN...	[more]
Q9CRB2	1.7e-23	39.35	H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus OX=10090 GN=Nhp2 PE=1 ...	[more]

BLAST of MELO3C002060.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKS6	3.02e-103	100.00	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	3.02e-103	100.00	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A0A0LVP3	3.83e-99	98.11	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]
A0A6J1GTK9	3.25e-98	94.34	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A6J1K350	2.67e-97	94.34	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]

BLAST of MELO3C002060.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	7.8e-56	72.15	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	7.8e-56	72.15	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	4.8e-13	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	4.8e-13	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	8.2e-13	32.03	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 54..68 score: 36.97 coord: 89..99 score: 42.98 coord: 73..86 score: 29.87 coord: 99..113 score: 36.06
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 101..113 score: 43.08 coord: 40..55 score: 41.25 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..155 e-value: 5.6E-49 score: 167.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..132
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 42..126 e-value: 1.7E-23 score: 82.2
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..157
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002060.jh1.t1	MELO3C002060.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding