MELO3C002060 (gene) Melon (DHL92) v4
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAGACGAAGCCAAAAACCCAAGCGTAGCGGTCTCCGTCGTCGTCGTCAAAATCTCATTTTTCTCCGGCAGTTCCATCTTCAAATCCTCTTACGGAGGCAATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGGTATACCATCTCGTTTACAAATTTTTTTTGGAGTTTTGAAGCTGTTTTTGATTGTATAGAGGAGGTTTGTGTTGGAATTAGTACGATTGCTTTCGTTGCCCTCAACCGATGGGTGAAACTGGTTGAATCTGGAAGCTTTTTTTTGTTCTTGATAGATTTGGTTTTTGTATTAGATATGAAAAACATTTCGTCTTAAAACATTCGTCTGTTTTCTTTCAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGGTAACTTCTGCTATGAATTTTATCCTAATTTTTCGCTTGCATTGATTAATATGATGCTAAAGATAGAACAATGGCGAAGGAATTAGGAATTATGGAATATTAATATAATTCCAATAGTCTTTTATATTCATTTTCATTATTTTGGGATGGATTGAAATCAAAACAAGCCGTTGGGAAATCTATACATATAATGTAATGCACGAAATTCCTTCTACTATATGTTATATTGAATTTCTTTTTTGCCCCTTCATCTTTTGTCCGCTGCAATGCAGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGTAAGTGAGGGCTATTTCAACCTTCTCAGGAATGCTTTGATTGTTTGTTGTTGTGTGTTACCTGAATAAGTTGAGAAATGAGATAAGTGTAATGGGTGCATATTTGTTCTTTATCTACTCTGAACTACTTGAGTTTGTAGAGCGTAATTAAGTGTAGGAGGTTGCAAAGCTTAACACCAAGTTCCTAAGGATCCTTAAAACTTTTCTCAACCATCTATGCCATGATTCTTGTTCTTGTGAAAATAATCTGACAGACGTTAATCGTGTTTGTGATCTAGGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGAAAAGTAAAGTTGTTTTCTTTAACTTCTCTCAATGTACTTGTAGCATTTCTCTTCAAACTGGTTAGTGTACTCTGTTTTACCCTCAAATTTGTTTGGTCTTATGCCATTTCTACTCAATCATCTCTCCCCAATATTAATATATATATAACTTATTCCAAA AGAGACGAAGCCAAAAACCCAAGCGTAGCGGTCTCCGTCGTCGTCGTCAAAATCTCATTTTTCTCCGGCAGTTCCATCTTCAAATCCTCTTACGGAGGCAATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGAAAAGTAAAGTTGTTTTCTTTAACTTCTCTCAATGTACTTGTAGCATTTCTCTTCAAACTGGTTAGTGTACTCTGTTTTACCCTCAAATTTGTTTGGTCTTATGCCATTTCTACTCAATCATCTCTCCCCAATATTAATATATATATAACTTATTCCAAA ATGGGAAGTGATAGCGAGGCAGAGAAGTCGCGTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCTGTTGGCTCTTGCTCCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTATAAGTGCCTGAAGCGGGGTGTGAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGAAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAATCAGATATTCGTTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCAGGGTCAACGAAGAGGCCAACATGTTGTGTGCTGGTACAAACAAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGACTTTGACCAAGTTGTAGCTGAAGTATCAGAACTTACTAGCACTCTTTTTTGA MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF Homology
BLAST of MELO3C002060 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.1e-54 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2) HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34 Identity = 76/156 (48.72%), Postives = 112/156 (71.79%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 6.1e-29 Identity = 68/154 (44.16%), Postives = 105/154 (68.18%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy Swiss-Prot
Match: Q6PBV6 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio OX=7955 GN=nhp2 PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23 Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy Swiss-Prot
Match: Q9CRB2 (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus OX=10090 GN=Nhp2 PE=1 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23 Identity = 61/155 (39.35%), Postives = 100/155 (64.52%), Query Frame = 0
BLAST of MELO3C002060 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of MELO3C002060 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]) HSP 1 Score: 295.8 bits (756), Expect = 2.2e-76 Identity = 154/159 (96.86%), Postives = 158/159 (99.37%), Query Frame = 0
BLAST of MELO3C002060 vs. NCBI nr
Match: XP_004137455.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis sativus] >KGN64091.1 hypothetical protein Csa_013891 [Cucumis sativus]) HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75 Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of MELO3C002060 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75 Identity = 151/159 (94.97%), Postives = 156/159 (98.11%), Query Frame = 0
BLAST of MELO3C002060 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]) HSP 1 Score: 290.4 bits (742), Expect = 9.2e-75 Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 6.7e-79 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 9.0e-76 Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 4.5e-75 Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0
BLAST of MELO3C002060 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74 Identity = 150/159 (94.34%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of MELO3C002060 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 214.2 bits (544), Expect = 7.8e-56 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of MELO3C002060 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 214.2 bits (544), Expect = 7.8e-56 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 0
BLAST of MELO3C002060 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13 Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 0
BLAST of MELO3C002060 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13 Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = 0
BLAST of MELO3C002060 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein ) HSP 1 Score: 71.2 bits (173), Expect = 8.2e-13 Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|