MELO3C002038 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002038
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription factor TCP5
Location	chr12: 25334307 .. 25335161 (-)
RNA-Seq Expression	MELO3C002038
Synteny	MELO3C002038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATCTTCTCTATCAATTCTTCCTTTTCCATTTGGCATTACAAAATCCTTCACTTTGCTACAAAAAATATATTCTTTCTCTCTTCTCTGAAATGGGATTGTTGAAATCTTGAAACCCATTTGATTGAAAGAAAAAAGATCATATTTTTGGATCATTCTATAAGCTCTGTTTTGAAGTTAAAAAAAACAATAATATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGACCGTCGACGACTCCATCAGAATTTTCTTCTCACCTTCCCCAACGGCAGAAAATAAAGGTGTGTTTTGATACGACTTTTAGAAAGATGAAAATTTTGTTTGAATTATAAATTACTAT

mRNA sequence

AAACAATCTTCTCTATCAATTCTTCCTTTTCCATTTGGCATTACAAAATCCTTCACTTTGCTACAAAAAATATATTCTTTCTCTCTTCTCTGAAATGGGATTGTTGAAATCTTGAAACCCATTTGATTGAAAGAAAAAAGATCATATTTTTGGATCATTCTATAAGCTCTGTTTTGAAGTTAAAAAAAACAATAATATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGACCGTCGACGACTCCATCAGAATTTTCTTCTCACCTTCCCCAACGGCAGAAAATAAAGGTGTGTTTTGATACGACTTTTAGAAAGATGAAAATTTTGTTTGAATTATAAATTACTAT

Coding sequence (CDS)

ATGATCTCAAAGTTAAAGGAAGACGGTGCTCATGATGAAGCAAAGCAAATGGAGGGGAAAAGGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTCCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTCTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATCGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCTCTCCATTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCATTCTGATATTGGAGGAGATGCTGCTTTGATGAAGGCCAAAAATGAAGAAACTGATCAGACACTTTTGGTTCAAACCAATGACATTAATGGAGACTCTTCCCATTTTGAACCTCCAAGCTTTCCATTCCCATTCATGTATCAGACTAATTCATCTCCATTTTCCTTCTGA

Protein sequence

MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF

Homology

[Close]

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-31
Identity = 64/101 (63.37%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQ 76
           ++ ++  + + SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+PTAIQ
Sbjct: 31  LQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQ 90

Query: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFD 118
           LYDLQ++LGLSQPSKVIDWL++  + ++DKLPPL FP  F+
Sbjct: 91  LYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 37  NPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLHFPKDF---DPNASILHHS 127
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.4e-28
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KED    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot
Match: Q93V43 (Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-20
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 28  SRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLS 87
           +R  ++   + RI RVS   GGKDRHSKV T KG RDRR+RLS+ TA+Q YDLQ++LG  
Sbjct: 21  NRLSRWHHNSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYD 80

Query: 88  QPSKVIDWLIDVTRFEIDKLPPL---HFPKD 116
           QPSK ++WLI      I +LP L   HFP D
Sbjct: 81  QPSKAVEWLIKAAEDSISELPSLNNTHFPTD 111

[Close]

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 39  RIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLID 98
           RI+RV    GGKDRHSKV T KG+RDRR+RLS+ TAIQ YDLQ++LG  QPSK I+WLI+
Sbjct: 43  RIYRVRA-TGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIN 102

Query: 99  VTRFEIDKLPPLHFPKDFDPNASILHHSDIGGDAALMKAKNEETDQTL 147
                ID LP L      DP A          DAA  + ++++  Q L
Sbjct: 103 AASPAIDTLPSL------DPAAFAAIPHAAAADAAPTRRRSQQQQQQL 143

[Close]

BLAST of MELO3C002038 vs. NCBI nr
Match: XP_008445912.1 (PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription factor TCP5 [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.3e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of MELO3C002038 vs. NCBI nr
Match: XP_011660343.1 (transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa_014153 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.5e-85
Identity = 166/181 (91.71%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 180
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 179

[Close]

BLAST of MELO3C002038 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-66
Identity = 142/200 (71.00%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKL ++G HDEAKQMEGKRKKA        FLRGNPRI RVS  FGGKDRHSKVCT+K
Sbjct: 1   MISKLTKEGVHDEAKQMEGKRKKA--------FLRGNPRILRVSSLFGGKDRHSKVCTVK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLS+PTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIG---------GDAALMKAKNEETDQTLL-----------VQTNDINGDSSHF 180
           SILHHS +           DAA + AKNEETDQ LL           VQTN I  +  HF
Sbjct: 121 SILHHSSLFLPQIPHFDIADAA-VTAKNEETDQRLLLHKLSSLSALQVQTNAIKENCCHF 180

[Close]

BLAST of MELO3C002038 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 138/195 (70.77%), Postives = 150/195 (76.92%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 180
           S LHH DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHFDIADAAA--KAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of MELO3C002038 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 138/195 (70.77%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 180
           S LHH DI    A  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHLDIAD--ATAKAKHEETGMLLLQKLSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of MELO3C002038 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of MELO3C002038 vs. ExPASy TrEMBL
Match: A0A1S3BEN2 (transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180
           SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF
Sbjct: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFMYQTNSSPFSF 180

[Close]

BLAST of MELO3C002038 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.2e-85
Identity = 166/181 (91.71%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLKE+GAHDEAKQ +GK KKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPL FPKDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLLVQTNDINGDSSHFEPPSFPFPFM-YQTNSSPFS 180
           SILHHSDI GDAA  KAKNEETD TLLVQTNDING  SHFEPP+FPFPFM  QTNS+PFS
Sbjct: 121 SILHHSDI-GDAA-FKAKNEETDHTLLVQTNDINGVCSHFEPPTFPFPFMDDQTNSAPFS 179

[Close]

BLAST of MELO3C002038 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 138/195 (70.77%), Postives = 150/195 (76.92%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MISKLK++G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISKLKQEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWL+DVTRF+IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 180
           S LHH DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFLHHFDIADAAA--KAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of MELO3C002038 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.6e-63
Identity = 136/195 (69.74%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 1   MISKLKEDGAHDEAKQMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60
           MIS+LK +G H EAKQMEGKRKK    SRQG FLRGNPRIFRVSP FGGKDRHSKVCT+K
Sbjct: 8   MISRLKPEGVHVEAKQMEGKRKKGP--SRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMK 67

Query: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTR +IDKLPPLHFPKDFDPNA
Sbjct: 68  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNA 127

Query: 121 SILHHSDIGGDAALMKAKNEETDQTLL----------------VQTNDINGDSSHFEPPS 180
           S L H DI   AA  KAK+EET   LL                +QTN +  +  HF+PPS
Sbjct: 128 SFL-HLDIADAAA--KAKHEETGMLLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPS 187

[Close]

BLAST of MELO3C002038 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-32
Identity = 64/101 (63.37%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 17  MEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQ 76
           ++ ++  + + SRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+PTAIQ
Sbjct: 31  LQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQ 90

Query: 77  LYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFD 118
           LYDLQ++LGLSQPSKVIDWL++  + ++DKLPPL FP  F+
Sbjct: 91  LYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of MELO3C002038 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 131.0 bits (328), Expect = 9.9e-31
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 37  NPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWL 96
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS+ TAIQ+YDLQ +LGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 97  IDVTRFEIDKLPPLHFPKDF---DPNASILHHS 127
           ++V + ++D LPPL FP  F   +PN + L  S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of MELO3C002038 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-29
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KED    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of MELO3C002038 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-29
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 4   KLKEDGAHDEAKQMEG----KRKKARTCSRQGQFLRG-NPRIFRVSPFFGGKDRHSKVCT 63
           ++KED    E +   G    K++     S    +++  +PRI RVS  FGGKDRHSKVCT
Sbjct: 24  EVKEDQEETEVRATSGKTVIKKQPTSISSSSSSWMKSKDPRIVRVSRAFGGKDRHSKVCT 83

Query: 64  IKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDP 123
           ++GLRDRR+RLS+PTAIQLYDLQ +LG+ QPSK +DWL+D  + EID+LPPL    +   
Sbjct: 84  LRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPE--- 143

Query: 124 NASILHH 126
           N SI +H
Sbjct: 144 NFSIFNH 147

[Close]

BLAST of MELO3C002038 vs. TAIR 10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 )

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-21
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 28  SRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLS 87
           +R  ++   + RI RVS   GGKDRHSKV T KG RDRR+RLS+ TA+Q YDLQ++LG  
Sbjct: 21  NRLSRWHHNSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYD 80

Query: 88  QPSKVIDWLIDVTRFEIDKLPPL---HFPKD 116
           QPSK ++WLI      I +LP L   HFP D
Sbjct: 81  QPSKAVEWLIKAAEDSISELPSLNNTHFPTD 111

The following BLAST results are available for this feature:

BLAST of MELO3C002038 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	3.3e-31	63.37	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	1.4e-29	67.74	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	3.4e-28	51.18	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
Q93V43	7.7e-20	53.85	Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1	[more]
A2XMN1	1.3e-19	50.00	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]

BLAST of MELO3C002038 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445912.1	2.3e-98	100.00	PREDICTED: transcription factor TCP5 [Cucumis melo] >TYJ98944.1 transcription fa...	[more]
XP_011660343.1	6.5e-85	91.71	transcription factor TCP5 [Cucumis sativus] >KGN64062.1 hypothetical protein Csa...	[more]
XP_038895251.1	2.3e-66	71.00	transcription factor PCF6 [Benincasa hispida]	[more]
XP_023001048.1	5.2e-66	70.77	transcription factor TCP13-like [Cucurbita maxima]	[more]
XP_023519980.1	5.2e-66	70.77	transcription factor TCP13-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C002038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIQ9	1.1e-98	100.00	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEN2	1.1e-98	100.00	transcription factor TCP5 OS=Cucumis melo OX=3656 GN=LOC103488791 PE=4 SV=1	[more]
A0A0A0LTI3	3.2e-85	91.71	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]
A0A6J1KPD9	2.5e-66	70.77	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1E7C6	7.6e-63	69.74	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]

BLAST of MELO3C002038 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	2.4e-32	63.37	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	9.9e-31	67.74	TCP domain protein 17	[more]
AT3G02150.1	2.4e-29	51.18	plastid transcription factor 1	[more]
AT3G02150.2	2.4e-29	51.18	plastid transcription factor 1	[more]
AT4G18390.1	5.4e-21	53.85	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 49..127 e-value: 1.0E-23 score: 84.6
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 49..107 score: 25.948359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR31072:SF154	TCP FAMILY TRANSCRIPTION FACTOR	coord: 6..130
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 6..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002038.1	MELO3C002038.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity