MELO3C002029 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002029
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glycine-rich RNA-binding protein
Location	chr12: 25371130 .. 25372861 (+)
RNA-Seq Expression	MELO3C002029
Synteny	MELO3C002029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCGTCTACGCAATTATTCCCCATCCGAATCGAAGCCATAGGGTTTAAGGTCGACTGTGAAAGAAAGGAAGAAGAGAACGAAATAAATTGTTTTCTCATTTCCATTTCCTTTTCCATTCATTCTCTTTTCTTGTCATGATTCTAATTTTTATTCTCCTTATGTTTCTGTATCTTCTTGTTCTTCGTTCTTGATTTTGATTGCTTCTGTTTTGTGTTTTGATCTTTTGTCGTTCTGTGTAGAGATATTTTGTTTGTCTGTTTGGAAGATATATAAAGCTTATTCTCCTGACAGAACTTATAAATGTTCTGATTGTGTTTTAAGACTTCCACTGTAACGTTTTGGGTATACATGCTCTGCTTAAGTATGTTTACGTTCGTTCTCCAGTGTTCCCTTGCTCCGGTTGGGACGTTTCTTAGTTTGATACTCTCTCTAGAATGTCTAATCAAAGCGTGCATGTGAACACAGATTAATTTGTGTGTAGAGATTAGCTATTTTGGTATTAGCTAGTTTGCTAGCATGTTTTGTTCATCTGCTTATTATGGATTATAAAGTAGTACTAAAACTTTCTTTTTGATATTGGAGTTAATGTTACATTGGAAGCTCAAAATATTTGTAGGTGCTGTATTATCCTGGGGGACTACTTTTGTTCCCTACAGAGTTTATTTTATTTTCTGGGTAATTCTTTCAGGTCGTTAATATGGCTTTTCTCAGTGAAGTTGGAAAAATATTTAGTCAGTGTTCTGCATCAGGAATCGGTTCACGTTTGCAACCTTCCAAGCTGTCTATCTTTCAAACTCTTAGATTCATGTCGGGTTCTGAAGTTTTTGTTGGAGGTTAGCTGGAAAATCGGTTCTCCTGTTCTCTCTTACACATTGTTTAAGCTTTAGAATGTTCCCTGAGATCCGTTGCTTTGTACTGCAGGCCTCTCATACAACTCCGATGATCTAACTCTGAGGGTAGCGTTCAGCCAGTATGGGGAAGTAGTTGAAGGTGTGCAGACAACTTATCTAATTAAGCATTATTGATTATGAAAGCTAAATTTTATATTTAGTATTACCACTTAGCTTATCATTAGTTTTGGAGATATTGTTCCTGTAAGGACAGCAATATTCTTGGCGGATGTCGTCTTCTCTTAGGTTGTGTTGAGTGAAAGAATTGAATTTCTTTTAATGGTTTATCTTTGTCTTAGCGAAAGCGATAATGGATCGTGAGTCTGGTAGATGCAAAGGTTACGGGTTTGTCACTTTCAGTGCCAATGCAGAAGCTTCTAGTGCTATTCAAGCTTTGAATGGAAAGGTAAATCATCAGCATGACACTGCTATGAGTTGGTTTGGTGATATTAGTGGTTCTGTTGTGGATTATACTTACTTTTTCTTTTTTGTAATCAGGATCTCAATGGTCGTCGCATTAGATGCGACTCTGCAACTGAAAGGGCTGGCCGCCGTGGCGGCTATGGCGGCGGTGGCGGTTATGGTGGTGGGGACAAAAACTGATGAATTTGCAAATAGGTCTTGAAAGGAATTGCCTTATCCGATTTTTCAACAAATGGCTTTTTGAGTGTAATGTCTTATGCCTCCTTGCACCGCCGAACCCTGATGATTTTGACTATTTTCTTGGTAAACTAAAATAGTCGTACCATCTTGTAAACACTATTTCATAACTACTTTGGAAACAATATTTCATAACTCTCAATTTGGTATGGTATTTACTATTTGGTATCGTTTTTATTA

mRNA sequence

AGGCGTCTACGCAATTATTCCCCATCCGAATCGAAGCCATAGGGTCGTTAATATGGCTTTTCTCAGTGAAGTTGGAAAAATATTTAGTCAGTGTTCTGCATCAGGAATCGGTTCACGTTTGCAACCTTCCAAGCTGTCTATCTTTCAAACTCTTAGATTCATGTCGGGTTCTGAAGTTTTTGTTGGAGGCCTCTCATACAACTCCGATGATCTAACTCTGAGGGTAGCGTTCAGCCAGTATGGGGAAGTAGTTGAAGCGAAAGCGATAATGGATCGTGAGTCTGGTAGATGCAAAGGTTACGGGTTTGTCACTTTCAGTGCCAATGCAGAAGCTTCTAGTGCTATTCAAGCTTTGAATGGAAAGGATCTCAATGGTCGTCGCATTAGATGCGACTCTGCAACTGAAAGGGCTGGCCGCCGTGGCGGCTATGGCGGCGGTGGCGGTTATGGTGGTGGGGACAAAAACTGATGAATTTGCAAATAGGTCTTGAAAGGAATTGCCTTATCCGATTTTTCAACAAATGGCTTTTTGAGTGTAATGTCTTATGCCTCCTTGCACCGCCGAACCCTGATGATTTTGACTATTTTCTTGGTAAACTAAAATAGTCGTACCATCTTGTAAACACTATTTCATAACTACTTTGGAAACAATATTTCATAACTCTCAATTTGGTATGGTATTTACTATTTGGTATCGTTTTTATTA

Coding sequence (CDS)

ATGGCTTTTCTCAGTGAAGTTGGAAAAATATTTAGTCAGTGTTCTGCATCAGGAATCGGTTCACGTTTGCAACCTTCCAAGCTGTCTATCTTTCAAACTCTTAGATTCATGTCGGGTTCTGAAGTTTTTGTTGGAGGCCTCTCATACAACTCCGATGATCTAACTCTGAGGGTAGCGTTCAGCCAGTATGGGGAAGTAGTTGAAGCGAAAGCGATAATGGATCGTGAGTCTGGTAGATGCAAAGGTTACGGGTTTGTCACTTTCAGTGCCAATGCAGAAGCTTCTAGTGCTATTCAAGCTTTGAATGGAAAGGATCTCAATGGTCGTCGCATTAGATGCGACTCTGCAACTGAAAGGGCTGGCCGCCGTGGCGGCTATGGCGGCGGTGGCGGTTATGGTGGTGGGGACAAAAACTGA

Protein sequence

MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERAGRRGGYGGGGGYGGGDKN

Homology

[Close]

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-29
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+ G I  Q +   + +++  S  S+FQ +R MS S++F+GG++Y+ D+ +LR AF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATER- 120
           ++YGEVV+ + I+DRE+GR +G+GFVTF+++  ASSAIQAL+G+DL+GR ++ + A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 ----------AGRRGGYGGGGGYGGG 136
                      G  GGYGG GGYGGG
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGG 146

[Close]

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-29
Identity = 76/139 (54.68%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+VG++FSQ S+    S       S+ Q++R MS S++FVGG+SY++D+  LR AF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           S+YGEVV+AK I+DRE+GR +G+ FVTF++  EAS+A+Q L+G+DL+GRRIR + ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 ---GRRGGYGGGGGYGGGD 137
              G RG  G GGGYG  D
Sbjct: 121 SGFGGRGFGGPGGGYGASD 132

[Close]

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 65/136 (47.79%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAF +++  I  Q    G+         S+  +LR+MS S++FVGGLS+ +DD +L+ AF
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           + +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ ++GK+LNGR+IR + ATER+
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 GR-RGGYGGGGGYGGG 136
              R  +GGGGGYGGG
Sbjct: 121 SAPRSSFGGGGGYGGG 131

[Close]

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-23
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAF +++G +  Q     I S       S+  +LR MS +++F+GGLS+ +DD +LR AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           + +G+VV+AK I+DRE+GR +G+GFV F+    A++AI  ++GK+LNGR IR + A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 GRRGGYGGGGGYGGG 136
                YGGGGGY GG
Sbjct: 121 SAPRAYGGGGGYSGG 130

[Close]

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 43  FVGGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALN 102
           FVGGL++ +DD  L  AFSQYGEV+++K I DRE+GR +G+GFVTF        AI+ +N
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 103 GKDLNGRRIRCDSATERA--------GRRGGY--GGGGGYGGG 136
           G+DL+GR I  + A  R         G  GGY  GGGGGYGGG
Sbjct: 71  GQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGG 113

[Close]

BLAST of MELO3C002029 vs. NCBI nr
Match: XP_008450062.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF
Sbjct: 42  MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 101

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA
Sbjct: 102 SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 161

Query: 121 GRRGGYGGGGGYGGGDKN 139
           GRRGGYGGGGGYGGGDKN
Sbjct: 162 GRRGGYGGGGGYGGGDKN 179

[Close]

BLAST of MELO3C002029 vs. NCBI nr
Match: XP_016900163.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Cucumis melo] >TYJ98935.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF
Sbjct: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA
Sbjct: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120

Query: 121 GRRGGYGGGGGYGGGDKN 139
           GRRGGYGGGGGYGGGDKN
Sbjct: 121 GRRGGYGGGGGYGGGDKN 138

[Close]

BLAST of MELO3C002029 vs. NCBI nr
Match: XP_004137437.1 (glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus] >KGN64057.2 hypothetical protein Csa_013477 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS VGKIFSQ SASGIGS LQPSKLSIF+TLRF+SGS+VFVGGLSYNSDDLTLRVAF
Sbjct: 31  MAFLSRVGKIFSQSSASGIGSHLQPSKLSIFRTLRFVSGSKVFVGGLSYNSDDLTLRVAF 90

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           S+YGEVVEA+ +MD ++GRCKG+GFVTFSA  EASSAI+AL+GKDL GRRIRC+ A E+ 
Sbjct: 91  SKYGEVVEARVVMDPDTGRCKGFGFVTFSAKEEASSAIKALDGKDLGGRRIRCNYAVEKV 150

Query: 121 GRRGGYGGGGGYGGGDKN 139
            R GG  G   YGGGDKN
Sbjct: 151 ARGGGRYGSSRYGGGDKN 168

[Close]

BLAST of MELO3C002029 vs. NCBI nr
Match: XP_004137435.1 (glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-43
Identity = 99/139 (71.22%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+VGKIFSQ SASGI S  QPS LS+FQTLRFMS S+VFVGGLSY +DD  L  AF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           ++YGEVVEA+ IMDR++GR +G+GFVTF A+ +ASSAIQAL+G+DL+GRRIRC  AT+RA
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 ----GRRGGYGGGGGYGGG 136
               G  GGYGGGGGYGGG
Sbjct: 121 SGGGGGGGGYGGGGGYGGG 139

[Close]

BLAST of MELO3C002029 vs. NCBI nr
Match: XP_038895325.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 9.0e-42
Identity = 101/139 (72.66%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+VGKIFS+ SAS IGS LQ S LSIFQT RFMSGS VFVGGLSY +DD  LR  F
Sbjct: 1   MAFLSKVGKIFSRNSASRIGSDLQASNLSIFQTFRFMSGSRVFVGGLSYGTDDQGLREEF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATER- 120
           ++YGEVVEAK +MDR+SGR +G+GFVTF+AN EASSAIQAL+G++L+GRRIRC+ ATER 
Sbjct: 61  AKYGEVVEAKVVMDRDSGRSRGFGFVTFAANEEASSAIQALDGQELHGRRIRCNHATERP 120

Query: 121 AGRRGGYGG---GGGYGGG 136
            G  GGYGG   GGGYGGG
Sbjct: 121 RGGGGGYGGGGYGGGYGGG 139

[Close]

BLAST of MELO3C002029 vs. ExPASy TrEMBL
Match: A0A5D3BKP6 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001360 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF
Sbjct: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA
Sbjct: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120

Query: 121 GRRGGYGGGGGYGGGDKN 139
           GRRGGYGGGGGYGGGDKN
Sbjct: 121 GRRGGYGGGGGYGGGDKN 138

[Close]

BLAST of MELO3C002029 vs. ExPASy TrEMBL
Match: A0A1S4DW21 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491687 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF
Sbjct: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA
Sbjct: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120

Query: 121 GRRGGYGGGGGYGGGDKN 139
           GRRGGYGGGGGYGGGDKN
Sbjct: 121 GRRGGYGGGGGYGGGDKN 138

[Close]

BLAST of MELO3C002029 vs. ExPASy TrEMBL
Match: A0A1S3BP28 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491687 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF
Sbjct: 42  MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 101

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA
Sbjct: 102 SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 161

Query: 121 GRRGGYGGGGGYGGGDKN 139
           GRRGGYGGGGGYGGGDKN
Sbjct: 162 GRRGGYGGGGGYGGGDKN 179

[Close]

BLAST of MELO3C002029 vs. ExPASy TrEMBL
Match: A0A0A0LTH6 (Glycine-rich RNA-binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G039180 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.2e-49
Identity = 107/138 (77.54%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS VGKIFSQ SASGIGS LQPSKLSIF+TLRF+SGS+VFVGGLSYNSDDLTLRVAF
Sbjct: 1   MAFLSRVGKIFSQSSASGIGSHLQPSKLSIFRTLRFVSGSKVFVGGLSYNSDDLTLRVAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           S+YGEVVEA+ +MD ++GRCKG+GFVTFSA  EASSAI+AL+GKDL GRRIRC+ A E+ 
Sbjct: 61  SKYGEVVEARVVMDPDTGRCKGFGFVTFSAKEEASSAIKALDGKDLGGRRIRCNYAVEKV 120

Query: 121 GRRGGYGGGGGYGGGDKN 139
            R GG  G   YGGGDKN
Sbjct: 121 ARGGGRYGSSRYGGGDKN 138

[Close]

BLAST of MELO3C002029 vs. ExPASy TrEMBL
Match: A0A0A0LQL8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-43
Identity = 99/139 (71.22%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+VGKIFSQ SASGI S  QPS LS+FQTLRFMS S+VFVGGLSY +DD  L  AF
Sbjct: 1   MAFLSKVGKIFSQSSASGIRSHFQPSNLSVFQTLRFMSSSKVFVGGLSYGTDDQRLTEAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           ++YGEVVEA+ IMDR++GR +G+GFVTF A+ +ASSAIQAL+G+DL+GRRIRC  AT+RA
Sbjct: 61  TKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGRRIRCSYATDRA 120

Query: 121 ----GRRGGYGGGGGYGGG 136
               G  GGYGGGGGYGGG
Sbjct: 121 SGGGGGGGGYGGGGGYGGG 139

[Close]

BLAST of MELO3C002029 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-30
Identity = 69/146 (47.26%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+ G I  Q +   + +++  S  S+FQ +R MS S++F+GG++Y+ D+ +LR AF
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATER- 120
           ++YGEVV+ + I+DRE+GR +G+GFVTF+++  ASSAIQAL+G+DL+GR ++ + A +R 
Sbjct: 61  TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

Query: 121 ----------AGRRGGYGGGGGYGGG 136
                      G  GGYGG GGYGGG
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGG 146

[Close]

BLAST of MELO3C002029 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-30
Identity = 76/139 (54.68%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAFLS+VG++FSQ S+    S       S+ Q++R MS S++FVGG+SY++D+  LR AF
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMSSSKIFVGGISYSTDEFGLREAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           S+YGEVV+AK I+DRE+GR +G+ FVTF++  EAS+A+Q L+G+DL+GRRIR + ATER 
Sbjct: 61  SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERG 120

Query: 121 ---GRRGGYGGGGGYGGGD 137
              G RG  G GGGYG  D
Sbjct: 121 SGFGGRGFGGPGGGYGASD 132

[Close]

BLAST of MELO3C002029 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 65/136 (47.79%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAF +++  I  Q    G+         S+  +LR+MS S++FVGGLS+ +DD +L+ AF
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           + +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ ++GK+LNGR+IR + ATER+
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 GR-RGGYGGGGGYGGG 136
              R  +GGGGGYGGG
Sbjct: 121 SAPRSSFGGGGGYGGG 131

[Close]

BLAST of MELO3C002029 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 65/136 (47.79%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAF +++  I  Q    G+         S+  +LR+MS S++FVGGLS+ +DD +L+ AF
Sbjct: 1   MAFCNKLSGILRQ----GVSQSSNGPVTSMLGSLRYMS-SKLFVGGLSWGTDDSSLKQAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           + +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ ++GK+LNGR+IR + ATER+
Sbjct: 61  TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 120

Query: 121 GR-RGGYGGGGGYGGG 136
              R  +GGGGGYGGG
Sbjct: 121 SAPRSSFGGGGGYGGG 131

[Close]

BLAST of MELO3C002029 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MAFLSEVGKIFSQCSASGIGSRLQPSKLSIFQTLRFMSGSEVFVGGLSYNSDDLTLRVAF 60
           MAF +++G +  Q     I S       S+  +LR MS +++F+GGLS+ +DD +LR AF
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLMS-TKLFIGGLSWGTDDASLRDAF 60

Query: 61  SQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDSATERA 120
           + +G+VV+AK I+DRE+GR +G+GFV F+    A++AI  ++GK+LNGR IR + A +R 
Sbjct: 61  AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 120

Query: 121 GRRGGYGGGGGYGGG 136
                YGGGGGY GG
Sbjct: 121 SAPRAYGGGGGYSGG 130

The following BLAST results are available for this feature:

BLAST of MELO3C002029 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	1.8e-29	47.26	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	5.3e-29	54.68	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	3.9e-24	47.79	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	7.4e-23	45.19	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P49310	4.2e-18	51.46	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of MELO3C002029 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450062.1	2.8e-67	100.00	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cu...	[more]
XP_016900163.1	2.8e-67	100.00	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Cu...	[more]
XP_004137437.1	1.3e-48	77.54	glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus] >KGN64057.2 ...	[more]
XP_004137435.1	4.7e-43	71.22	glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus]	[more]
XP_038895325.1	9.0e-42	72.66	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]

BLAST of MELO3C002029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKP6	1.3e-67	100.00	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4DW21	1.3e-67	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]
A0A1S3BP28	1.3e-67	100.00	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LTH6	6.2e-49	77.54	Glycine-rich RNA-binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G039180 PE=4...	[more]
A0A0A0LQL8	2.3e-43	71.22	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039190 PE=4 SV...	[more]

BLAST of MELO3C002029 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	1.3e-30	47.26	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	3.8e-30	54.68	glycine-rich RNA-binding protein 5	[more]
AT3G23830.1	2.8e-25	47.79	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.8e-25	47.79	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	5.3e-24	45.19	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..114 e-value: 6.3E-24 score: 95.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..112 e-value: 1.2E-18 score: 66.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..118 score: 19.194885
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..138 e-value: 6.0E-30 score: 106.1
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..136
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..136
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002029.1	MELO3C002029.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding