MELO3C002013 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002013
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LYR motif-containing protein 4
Location	chr12: 25488833 .. 25489319 (-)
RNA-Seq Expression	MELO3C002013
Synteny	MELO3C002013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCTAGGCTCTTCCTCCTTCACCGATGGCAACTCCGTCGAGCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGAGTCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTCAACCATTGATTTCAATTTCTTTTTGTTTTTTTTTTTTTTTTGGTTCGATGAATTTGTAGTATTTGAGAATTTTTGTGAGAATTGAATTGTAAACTGACATTCTGTTGTTATTAATTATGAGCAAATTTTTTTCCATCCCATCCTGAAATTCTCTTGCGAGCTTAATTTCGAAAGTAAAATTAGGGATTTTTTCCCTTTGAGTC

mRNA sequence

ATCCCTAGGCTCTTCCTCCTTCACCGATGGCAACTCCGTCGAGCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGAGTCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTCAACCATTGATTTCAATTTCTTTTTGTTTTTTTTTTTTTTTTGGTTCGATGAATTTGTAGTATTTGAGAATTTTTGTGAGAATTGAATTGTAAACTGACATTCTGTTGTTATTAATTATGAGCAAATTTTTTTCCATCCCATCCTGAAATTCTCTTGCGAGCTTAATTTCGAAAGTAAAATTAGGGATTTTTTCCCTTTGAGTC

Coding sequence (CDS)

ATGGCAACTCCGTCGAGCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACGGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGAGTCTCTCCGACGCTTCATCCATCTCCTCCGCCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGCATCATGGATGTCAACCATTGA

Protein sequence

MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGRAQLEVAKRQALVYSLYAPKVKSIMDVNH

Homology

[Close]

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 6  SSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGRAQLEV 65
          ++++LSL+R L++ + +FP YN R Y  RR  D+FR N+S+ D   +      GR  L++
Sbjct: 5  TAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDM 64

Query: 66 AKRQALVYSLYAPKVKSIMD 86
           +RQ  +  +Y P  K+I++
Sbjct: 65 IRRQVAIGKMY-PTQKTIVE 83

[Close]

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-07
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA  S +++LSL+R++LR +++F  YN R Y  RR  D+FREN+++ D   I +     +
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

[Close]

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot
Match: B5X5U9 (LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA  S ++++SL+R L++ +++FP YN R Y  RR  DSFREN  + +  ++       R
Sbjct: 1  MAACSRTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQAR 60

Query: 61 AQLEVAKRQALVYSLY 77
            L V +RQ  +  +Y
Sbjct: 61 ENLAVIRRQVSIGQMY 76

[Close]

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA+ S ++++SL+R L++ +++FP YN R Y  RR  D FREN  + +  ++       R
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V KRQ  +  LY+
Sbjct: 61 ENLAVIKRQVSIGHLYS 77

[Close]

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot
Match: Q6DCS1 (LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          M+  S S++LSL++ +LR +++F  YN R Y  RR  D+FRE +++ D   I +     +
Sbjct: 1  MSASSRSQVLSLYKIMLRESQRFSSYNYRTYAIRRIRDAFREKKNVDDFLEIETLLHRAK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNH 89
            L V +RQ  +  +YA     I    H
Sbjct: 61 ENLNVIQRQVTIGQMYATHKLVIESAEH 88

[Close]

BLAST of MELO3C002013 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.6e-36
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS+SEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQ+LSDASSISS YAGGR
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNH 89
          AQLEVAKRQA+VYSLYAPKVKSIMDVNH
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 88

[Close]

BLAST of MELO3C002013 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQSLSDASSISSAYAGG+
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          AQLEVAKRQALVYSLYAPKVKSIMDVN
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

[Close]

BLAST of MELO3C002013 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA PS SEIL+LFRSLLRTARQFPDYNIREY KRRTID+FRENQSLSD SSISS YAGG+
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          AQLEVAKRQALVYSLYAPKVKSIMDVN
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

[Close]

BLAST of MELO3C002013 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN+SLSD SSISSAYAGG+
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          AQLEVAKRQALVYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 86

[Close]

BLAST of MELO3C002013 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus])

HSP 1 Score: 134.4 bits (337), Expect = 4.7e-28
Identity = 66/88 (75.00%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N++LS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNH 89
          +QL+VAKRQA+VYSLYAPK+KSIMD+ H
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIKH 88

[Close]

BLAST of MELO3C002013 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS+SEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQ+LSDASSISS YAGGR
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNH 89
          AQLEVAKRQA+VYSLYAPKVKSIMDVNH
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 88

[Close]

BLAST of MELO3C002013 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.9e-32
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN+SLSD SSISSAYAGG+
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          AQLEVAKRQALVYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 86

[Close]

BLAST of MELO3C002013 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 66/88 (75.00%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N++LS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNH 89
          +QL+VAKRQA+VYSLYAPK+KSIMD+ H
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIKH 88

[Close]

BLAST of MELO3C002013 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 64/87 (73.56%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA+PS  E+L+LFRSLL+TARQFPDYNIREY KRRTID FR+N+ LSD S +++A++ GR
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKS+M++N
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMELN 87

[Close]

BLAST of MELO3C002013 vs. ExPASy TrEMBL
Match: A0A1U7V895 (LYR motif-containing protein 4 OS=Nicotiana sylvestris OX=4096 GN=LOC104213373 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.3e-27
Identity = 63/87 (72.41%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MATPSSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGR 60
          MA+PS  E+L+LFRSLL+TARQFPDYNIREY KRRTID FR+N+ LSD S +++A++ GR
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 88
          +QLEVAKRQA+VYSLYAPKVKS+M++N
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMELN 87

[Close]

BLAST of MELO3C002013 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-20
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 5  SSSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQSLSDASSISSAYAGGRAQLE 64
          SSSE+LSL R+LLR  RQFPDYNIREY KRRT+D FR N++L+D S ++ AYA  + QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQALVYSLYAPKVKSIMDV 87
          VA+R   VY  Y PK K+IM+V
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEV 84

The following BLAST results are available for this feature:

BLAST of MELO3C002013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5XD90	1.2e-07	35.00	LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1	[more]
Q9HD34	6.2e-07	37.66	LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1	[more]
B5X5U9	1.4e-06	35.53	LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1	[more]
B8JLQ0	1.8e-06	36.36	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
Q6DCS1	3.1e-06	32.95	LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1	[more]

BLAST of MELO3C002013 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64034.1	3.6e-36	95.45	hypothetical protein Csa_014098 [Cucumis sativus]	[more]
XP_038894896.1	1.2e-34	94.25	LYR motif-containing protein 4 [Benincasa hispida]	[more]
KAG6607477.1	8.3e-33	90.80	LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]
XP_022137452.1	2.0e-31	90.70	LYR motif-containing protein 4 [Momordica charantia]	[more]
KAF5807263.1	4.7e-28	75.00	putative complex 1 LYR protein [Helianthus annuus]	[more]

BLAST of MELO3C002013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LST7	1.7e-36	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1	[more]
A0A6J1C8A4	9.9e-32	90.70	LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE...	[more]
A0A251UU63	2.3e-28	75.00	Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015...	[more]
A0A1S3XFP4	1.9e-27	73.56	LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4...	[more]
A0A1U7V895	4.3e-27	72.41	LYR motif-containing protein 4 OS=Nicotiana sylvestris OX=4096 GN=LOC104213373 P...	[more]

BLAST of MELO3C002013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	1.3e-20	60.98	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 1.7E-19 score: 69.6
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 8..76 e-value: 6.28231E-22 score: 79.1005

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002013.1	MELO3C002013.1	mRNA