MELO3C001701 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001701
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Eukaryotic translation initiation factor 3 subunit M
Location	chr01: 19149112 .. 19149262 (+)
RNA-Seq Expression	MELO3C001701
Synteny	MELO3C001701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATTTGTTGGACATGCCTGCTGTAGGGCAACTGGAGAAGGATGCCAAATATTCATTGGTTTATCAGCTTCTGAAGATTTTTTTGACCCAGAGATTGGATGCTTACATGGAATTTCAAGCTGCAAATTCTTCTTTATTGAAAAGCTATG

mRNA sequence

TGTGATTTGTTGGACATGCCTGCTGTAGGGCAACTGGAGAAGGATGCCAAATATTCATTGGTTTATCAGCTTCTGAAGATTTTTTTGACCCAGAGATTGGATGCTTACATGGAATTTCAAGCTGCAAATTCTTCTTTATTGAAAAGCTATG

Coding sequence (CDS)

ATGCCTGCTGTAGGGCAACTGGAGAAGGATGCCAAATATTCATTGGTTTATCAGCTTCTGAAGATTTTTTTGACCCAGAGATTGGATGCTTACATGGAATTTCAAGCTGCAAATTCTTCTTTATTGAAAAGCTAT

Protein sequence

MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY

Homology

[Close]

BLAST of MELO3C001701 vs. NCBI nr
Match: KAA0039431.1 (eukaryotic translation initiation factor 3 subunit M [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 244 MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 288

[Close]

BLAST of MELO3C001701 vs. NCBI nr
Match: TYK00620.1 (eukaryotic translation initiation factor 3 subunit M [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 244 MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 288

[Close]

BLAST of MELO3C001701 vs. NCBI nr
Match: XP_016903699.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
          MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 45

[Close]

BLAST of MELO3C001701 vs. NCBI nr
Match: KAA0053298.1 (eukaryotic translation initiation factor 3 subunit M-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 93  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 137

[Close]

BLAST of MELO3C001701 vs. NCBI nr
Match: XP_008467080.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like isoform X2 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
          MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 45

[Close]

BLAST of MELO3C001701 vs. ExPASy TrEMBL
Match: A0A5D3BNN4 (Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002400 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 244 MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 288

[Close]

BLAST of MELO3C001701 vs. ExPASy TrEMBL
Match: A0A5A7TCS8 (Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002380 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 244 MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 288

[Close]

BLAST of MELO3C001701 vs. ExPASy TrEMBL
Match: A0A5A7UE08 (Eukaryotic translation initiation factor 3 subunit M-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001100 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 93  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 137

[Close]

BLAST of MELO3C001701 vs. ExPASy TrEMBL
Match: E5GC98 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
          MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 1  MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 45

[Close]

BLAST of MELO3C001701 vs. ExPASy TrEMBL
Match: A0A1S3CA60 (Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo OX=3656 GN=LOC103498537 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY
Sbjct: 244 MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 288

[Close]

BLAST of MELO3C001701 vs. TAIR 10
Match: AT3G02200.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           +PAV QLEKDAKY+ VYQLLKIFLTQRL+AY EFQ ANS  L+SY
Sbjct: 244 LPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSY 288

[Close]

BLAST of MELO3C001701 vs. TAIR 10
Match: AT3G02200.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   MPAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           +PAV QLEKDAKY+ VYQLLKIFLTQRL+AY EFQ ANS  L+SY
Sbjct: 244 LPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSY 288

[Close]

BLAST of MELO3C001701 vs. TAIR 10
Match: AT5G15610.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 2   PAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           PAV QLEKD   + VYQLLKIFLTQRLDAYMEFQ ANS  L++Y
Sbjct: 245 PAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTY 288

[Close]

BLAST of MELO3C001701 vs. TAIR 10
Match: AT5G15610.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 2   PAVGQLEKDAKYSLVYQLLKIFLTQRLDAYMEFQAANSSLLKSY 46
           PAV QLEKD   + VYQLLKIFLTQRLDAYMEFQ ANS  L++Y
Sbjct: 245 PAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTY 288

The following BLAST results are available for this feature:

BLAST of MELO3C001701 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039431.1	1.2e-14	100.00	eukaryotic translation initiation factor 3 subunit M [Cucumis melo var. makuwa]	[more]
TYK00620.1	1.2e-14	100.00	eukaryotic translation initiation factor 3 subunit M [Cucumis melo var. makuwa]	[more]
XP_016903699.1	1.2e-14	100.00	PREDICTED: eukaryotic translation initiation factor 3 subunit M-like isoform X1 ...	[more]
KAA0053298.1	1.2e-14	100.00	eukaryotic translation initiation factor 3 subunit M-like isoform X2 [Cucumis me...	[more]
XP_008467080.1	1.2e-14	100.00	PREDICTED: eukaryotic translation initiation factor 3 subunit M-like isoform X2 ...	[more]

BLAST of MELO3C001701 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C001701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNN4	5.6e-15	100.00	Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo var. makuwa...	[more]
A0A5A7TCS8	5.6e-15	100.00	Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo var. makuwa...	[more]
A0A5A7UE08	5.6e-15	100.00	Eukaryotic translation initiation factor 3 subunit M-like isoform X2 OS=Cucumis ...	[more]
E5GC98	5.6e-15	100.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3CA60	5.6e-15	100.00	Eukaryotic translation initiation factor 3 subunit M OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MELO3C001701 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02200.1	4.0e-13	77.78	Proteasome component (PCI) domain protein	[more]
AT3G02200.2	4.0e-13	77.78	Proteasome component (PCI) domain protein	[more]
AT5G15610.1	1.3e-11	75.00	Proteasome component (PCI) domain protein	[more]
AT5G15610.2	1.3e-11	75.00	Proteasome component (PCI) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15350:SF14	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT M	coord: 1..45
None	No IPR available	PANTHER	PTHR15350	COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001701.1	MELO3C001701.1	mRNA