MELO3C001644 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001644
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NBS-LRR type resistance protein
Location	chr06: 20564669 .. 20564938 (+)
RNA-Seq Expression	MELO3C001644
Synteny	MELO3C001644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGTGGCTCGCGGCTCGGCTGGAAGCGGGTCTCGGGTCGGGTCAGCTCGGAACCGGGGCGACCACGAACATCGGTCTTCGGCGTTCGACGACAGAAATGTTTCGCGGCTTGGAGGCGTTCGACGATCGGCTCCGCTTCAACGCGGCGGAGAGCGACTGGGCGTCGGCGGACACAGTGGGATGAAGGACGCACGGCGGCGTCCGGGTGCGTGAGATCGAGAGGGAGTTCGGAATGGATGGGCCGCGGCGGACGAAAACCGGAGCGGTGA

mRNA sequence

GCTTGTGGCTCGCGGCTCGGCTGGAAGCGGGTCTCGGGTCGGGTCAGCTCGGAACCGGGGCGACCACGAACATCGGTCTTCGGCGTTCGACGACAGAAATGTTTCGCGGCTTGGAGGCGTTCGACGATCGGCTCCGCTTCAACGCGGCGGAGAGCGACTGGGCGTCGGCGGACACAGTGGGATGAAGGACGCACGGCGGCGTCCGGGTGCGTGAGATCGAGAGGGAGTTCGGAATGGATGGGCCGCGGCGGACGAAAACCGGAGCGGTGA

Coding sequence (CDS)

GCTTGTGGCTCGCGGCTCGGCTGGAAGCGGGTCTCGGGTCGGGTCAGCTCGGAACCGGGGCGACCACGAACATCGGTCTTCGGCGTTCGACGACAGAAATGTTTCGCGGCTTGGAGGCGTTCGACGATCGGCTCCGCTTCAACGCGGCGGAGAGCGACTGGGCGTCGGCGGACACAGTGGGATGAAGGACGCACGGCGGCGTCCGGGTGCGTGAGATCGAGAGGGAGTTCGGAATGGATGGGCCGCGGCGGACGAAAACCGGAGCGGTGA

Protein sequence

ACGSRLGWKRVSGRVSSEPGRPRTSVFGVRRQKCFAAWRRSTIGSASTRRRATGRRRTQWDEGRTAASGCVRSRGSSEWMGRGGRKPER

Homology

[Close]

BLAST of MELO3C001644 vs. NCBI nr
Match: KAA0042021.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12  SGRVSSEPGRPRTSVFGVRRQKCFAAWRRSTIGSASTRRRATGRRRTQWDEGRTAASGCV 71
           SGRVS + G+PR +VF V+R+  FAAWR  T  SAST+R ATGRRRT+ DEGRT ASGCV
Sbjct: 192 SGRVSLKLGQPRATVFDVQRRGRFAAWRSPTTDSASTQRSATGRRRTRSDEGRTVASGCV 251

Query: 72  RSRGSSE 79
           R RG S+
Sbjct: 252 RPRGRSK 258

[Close]

BLAST of MELO3C001644 vs. NCBI nr
Match: KAA0063392.1 (hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 16  SSEPGRPRTSVFGVRRQKCFAAWRRSTIGSASTRRRATGRRRTQWDEGRTAASGCVRSRG 75
           S + G+PR +VFGVRR+  FAA R    GSASTRRRAT  RRTQ DEGRTAASG VR RG
Sbjct: 147 SLKHGQPRATVFGVRRRGRFAACRSPITGSASTRRRATRHRRTQLDEGRTAASGYVRPRG 206

Query: 76  SSEWMG 82
           SSE  G
Sbjct: 207 SSEMDG 212

[Close]

BLAST of MELO3C001644 vs. ExPASy TrEMBL
Match: A0A5A7TKE1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004670 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.7e-12
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12  SGRVSSEPGRPRTSVFGVRRQKCFAAWRRSTIGSASTRRRATGRRRTQWDEGRTAASGCV 71
           SGRVS + G+PR +VF V+R+  FAAWR  T  SAST+R ATGRRRT+ DEGRT ASGCV
Sbjct: 192 SGRVSLKLGQPRATVFDVQRRGRFAAWRSPTTDSASTQRSATGRRRTRSDEGRTVASGCV 251

Query: 72  RSRGSSE 79
           R RG S+
Sbjct: 252 RPRGRSK 258

[Close]

BLAST of MELO3C001644 vs. ExPASy TrEMBL
Match: A0A5A7V558 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00220 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 16  SSEPGRPRTSVFGVRRQKCFAAWRRSTIGSASTRRRATGRRRTQWDEGRTAASGCVRSRG 75
           S + G+PR +VFGVRR+  FAA R    GSASTRRRAT  RRTQ DEGRTAASG VR RG
Sbjct: 147 SLKHGQPRATVFGVRRRGRFAACRSPITGSASTRRRATRHRRTQLDEGRTAASGYVRPRG 206

Query: 76  SSEWMG 82
           SSE  G
Sbjct: 207 SSEMDG 212

The following BLAST results are available for this feature:

BLAST of MELO3C001644 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042021.1	1.4e-11	65.67	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0063392.1	4.5e-10	68.18	hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C001644 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C001644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKE1	6.7e-12	65.67	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7V558	2.2e-10	68.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C001644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001644.1	MELO3C001644.1	mRNA