MELO3C001586 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001586
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr09: 6452228 .. 6452585 (+)
RNA-Seq Expression	MELO3C001586
Synteny	MELO3C001586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAAACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAAATGAGCTACAGCAACAAGAGAATGCAGCAGTACCCGGACAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAA

mRNA sequence

ATGACACAAACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAAATGAGCTACAGCAACAAGAGAATGCAGCAGTACCCGGACAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAA

Coding sequence (CDS)

ATGACACAAACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACCCGAGCAATCAAATGAGCTACAGCAACAAGAGAATGCAGCAGTACCCGGACAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAA

Protein sequence

MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE

Homology

[Close]

BLAST of MELO3C001586 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 6.5e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 484 MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 543

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 544 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 602

[Close]

BLAST of MELO3C001586 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.2e-56
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 633 MTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 692

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 693 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 751

[Close]

BLAST of MELO3C001586 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 2   TQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 61
           TQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD
Sbjct: 186 TQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 245

Query: 62  PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 246 PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 303

[Close]

BLAST of MELO3C001586 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQT+SEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 641 MTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 700

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSD QQQQENQEE
Sbjct: 701 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEE 759

[Close]

BLAST of MELO3C001586 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-54
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 371 MTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 430

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRG+HNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSDEQQQQEN EE
Sbjct: 431 DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEE 489

[Close]

BLAST of MELO3C001586 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.2e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 484 MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 543

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 544 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 602

[Close]

BLAST of MELO3C001586 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 633 MTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 692

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 693 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 751

[Close]

BLAST of MELO3C001586 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.8e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 2   TQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 61
           TQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD
Sbjct: 186 TQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSD 245

Query: 62  PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE
Sbjct: 246 PSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 303

[Close]

BLAST of MELO3C001586 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
           MTQT+SEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS
Sbjct: 641 MTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 700

Query: 61  DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
           DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSD QQQQENQEE
Sbjct: 701 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEE 759

[Close]

BLAST of MELO3C001586 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1    MTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 60
            MTQTQSEHNYVSPVMMMPTFGTTYYDS VGQSSDFGRGYYNS+AGQSSTDFGQQYYDLGS
Sbjct: 1132 MTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGS 1191

Query: 61   DPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEE 120
            DPSSSYMHGHGRGRG+HNEYLYYEVPAAVPEQS+ELQQQENAAVPGQSDEQQQQEN EE
Sbjct: 1192 DPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEE 1250

The following BLAST results are available for this feature:

BLAST of MELO3C001586 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067080.1	6.5e-57	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0034013.1	4.2e-56	99.16	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK18891.1	1.6e-55	99.15	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0055624.1	3.0e-54	96.64	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0036767.1	5.2e-54	95.80	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C001586 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C001586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIP6	3.2e-57	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7SU33	2.0e-56	99.16	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3D5R5	7.8e-56	99.15	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7UKC7	1.5e-54	96.64	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BAB0	2.5e-54	95.80	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of MELO3C001586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001586.1	MELO3C001586.1	mRNA