MELO3C001556 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001556
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U3 small nucleolar ribonucleoprotein protein IMP3
Location	chr07: 12281147 .. 12281506 (-)
RNA-Seq Expression	MELO3C001556
Synteny	MELO3C001556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCTTCAGCTGCGAAGTGTCGTGAGGTGAAACAGAAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGATGATTACAAGAAGTAACCCCCTTTCGTATATCTTCTATTTTCTTCCCTTTTCTTTCTTATATCGCTTTTAATTTGATTTCATTTAGGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATCGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGA

mRNA sequence

CCTTCTTCAGCTGCGAAGTGTCGTGAGGTGAAACAGAAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGATGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATCGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGA

Coding sequence (CDS)

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGATGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATCGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTMLKKMNEKDPFRSELTEKLLEKL

Homology

[Close]

BLAST of MELO3C001556 vs. NCBI nr
Match: XP_008466885.1 (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFRSELTEKLLEKL
Sbjct: 61 KKMNEKDPFRSELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFRSELTEKLLEKL
Sbjct: 61 KKMNEKDPFRSELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFR ELTEKLLEKL
Sbjct: 61 KKMNEKDPFRLELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFR ELTEKLLEKL
Sbjct: 61 KKMNEKDPFRLELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV ML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMN+KDPFR E+TEKLLEKL
Sbjct: 61 KKMNDKDPFRLEMTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L   L
Sbjct: 2  VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
            +   DPFR +  + LL+KL
Sbjct: 62 SLLPPTDPFRRKHEQLLLDKL 82

[Close]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-13
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKR-EGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
          MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1  MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61 LKKMNEKDPFRSELTEKLLEKL 82
          L  ++  DPFR +    LLEKL
Sbjct: 61 LSLLDPTDPFRLQYENLLLEKL 82

[Close]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-12
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
          +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2  VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61 LKKMNEKDPFRSELTEKLLEKL 82
          L+ + E+DPFR   +  LL+KL
Sbjct: 62 LRDLPERDPFRVRSSAALLDKL 83

[Close]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-12
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
          +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2  VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61 LKKMNEKDPFRSELTEKLLEKL 82
          L+ + E+DPFR   +  LL+KL
Sbjct: 62 LRDLPERDPFRVRASAALLDKL 83

[Close]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot
Match: O01513 (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans OX=6239 GN=C48B6.2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 29/80 (36.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          +RKLK HEQKLLKK +F+ W+ +   ++  ++ ++++  R+ Y  Y++L    +++  ++
Sbjct: 2  VRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLI 61

Query: 61 KKMNEKDPFRSELTEKLLEK 81
          K ++E DPFRS+ TE +L K
Sbjct: 62 KNLSESDPFRSKCTEDMLTK 81

[Close]

BLAST of MELO3C001556 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.2e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFRSELTEKLLEKL
Sbjct: 61 KKMNEKDPFRSELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. ExPASy TrEMBL
Match: A0A1S3CTI5 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucumis melo OX=3656 GN=LOC103504207 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.2e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFRSELTEKLLEKL
Sbjct: 61 KKMNEKDPFRSELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFR ELTEKLLEKL
Sbjct: 61 KKMNEKDPFRLELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFR ELTEKLLEKL
Sbjct: 61 KKMNEKDPFRLELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1  MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          KKMNEKDPFR ELTEKLLEKL
Sbjct: 61 KKMNEKDPFRLELTEKLLEKL 81

[Close]

BLAST of MELO3C001556 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 116.7 bits (291), Expect = 8.7e-27
Identity = 54/81 (66.67%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
          MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS LCR VQKL  ++
Sbjct: 1  MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61 KKMNEKDPFRSELTEKLLEKL 82
          K+M+  DPFR ++T+ LLEKL
Sbjct: 61 KQMDPADPFRIQMTDMLLEKL 81

The following BLAST results are available for this feature:

BLAST of MELO3C001556 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466885.1	6.6e-37	100.00	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis melo]	[more]
TYK23826.1	6.6e-37	100.00	U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak...	[more]
XP_004153543.1	3.3e-36	98.77	U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ...	[more]
KAA0041194.1	3.3e-36	98.77	U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak...	[more]
XP_038880355.1	4.8e-35	95.06	U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida]	[more]

BLAST of MELO3C001556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32899	1.2e-17	53.09	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s...	[more]
O13835	9.1e-13	47.56	U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (...	[more]
Q3T0M3	2.0e-12	46.34	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ...	[more]
Q921Y2	4.5e-12	45.12	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im...	[more]
O01513	4.2e-10	36.25	Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans OX=6239 GN=C48B...	[more]

BLAST of MELO3C001556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJI4	3.2e-37	100.00	U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A1S3CTI5	3.2e-37	100.00	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3BRX0	1.6e-36	98.77	U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A0A0KZG3	1.6e-36	98.77	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126...	[more]
A0A6J1GW22	2.3e-35	95.06	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of MELO3C001556 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15750.1	8.7e-27	66.67	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..79 e-value: 6.4E-8 score: 42.3
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 3..62 e-value: 9.9E-9 score: 36.0
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR11831:SF1	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001556.1	MELO3C001556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0019843	rRNA binding