MELO3C001504 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001504
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 28436058 .. 28436288 (+)
RNA-Seq Expression	MELO3C001504
Synteny	MELO3C001504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTAATGAGGCGATGTGGAACCACACAGGCTTCCCTTTGGGCATGCCTCATATGGTTACCACTCACCTATGCTCTTGCAGCATGCCCCAACAAGACTATCATAATAATATGCGAAGCACCTGAGTGCCTCGACAAAAGAGGAATTTGAGATAGGGAAGGCGTGGTAGAGACTGAGAGAGAAAGTTGATGCAAAGGTTTAGATCTTCTCTTTTTATGAGACAAGCCATGA

mRNA sequence

ATCTTAATGAGGCGATGTGGAACCACACAGGCTTCCCTTTGGGCATGCCTCATATGGTTACCACTCACCTATGCTCTTGCAGCATGCCCCAACAAGACTATCATAATAATATGCGAAGCACCTGAGTGCCTCGACAAAAGAGGAATTTGAGATAGGGAAGGCGTGGTAGAGACTGAGAGAGAAAGTTGATGCAAAGGTTTAGATCTTCTCTTTTTATGAGACAAGCCATGA

Coding sequence (CDS)

ATGAGGCGATGTGGAACCACACAGGCTTCCCTTTGGGCATGCCTCATATGGTTACCACTCACCTATGCTCTTGCAGCATGCCCCAACAAGACTATCATAATAATATGCGAAGCACCTGAGTGCCTCGACAAAAGAGGAATTTGA

Protein sequence

MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI

Homology

[Close]

BLAST of MELO3C001504 vs. NCBI nr
Match: KAA0042227.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-10
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYALAACP+KTIIII EA E LD+RGI
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEWLDQRGI 47

[Close]

BLAST of MELO3C001504 vs. NCBI nr
Match: KAA0064098.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYALAACP+KTIIII EA E LD+RGI
Sbjct: 1  MIRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAERLDQRGI 47

[Close]

BLAST of MELO3C001504 vs. NCBI nr
Match: KAA0056231.1 (hypothetical protein E6C27_scaffold967G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYAL AC +KTIIII EA E LD+RGI
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALVACLDKTIIIIREAAERLDQRGI 47

[Close]

BLAST of MELO3C001504 vs. ExPASy TrEMBL
Match: A0A5A7TKL6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold129G00170 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYALAACP+KTIIII EA E LD+RGI
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEWLDQRGI 47

[Close]

BLAST of MELO3C001504 vs. ExPASy TrEMBL
Match: A0A5A7V903 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2613G00020 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-10
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYALAACP+KTIIII EA E LD+RGI
Sbjct: 1  MIRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAERLDQRGI 47

[Close]

BLAST of MELO3C001504 vs. ExPASy TrEMBL
Match: A0A5A7URS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold967G00180 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MRRCGTTQASLWACLIWLPLTYALAACPNKTIIIICEAPECLDKRGI 48
          M R GTTQA+LW+CL+ LPLTYAL AC +KTIIII EA E LD+RGI
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALVACLDKTIIIIREAAERLDQRGI 47

The following BLAST results are available for this feature:

BLAST of MELO3C001504 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042227.1	5.3e-10	76.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064098.1	1.2e-09	76.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0056231.1	2.9e-08	72.34	hypothetical protein E6C27_scaffold967G00180 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C001504 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C001504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKL6	2.5e-10	76.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V903	5.7e-10	76.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7URS5	1.4e-08	72.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C001504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..27 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001504.1	MELO3C001504.1	mRNA