MELO3C001168 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001168
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S13
Location	chr05: 14006789 .. 14006933 (+)
RNA-Seq Expression	MELO3C001168
Synteny	MELO3C001168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCTTTTTTATTACTATCAAAAGGGATTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGGTTAGAAAGCATTTGGAAAGGAACAGAAAGGACAAAGACTCCAAGGTACACATTGTACTCT

mRNA sequence

ATGTGTGCTTTTTTATTACTATCAAAAGGGATTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGGTTAGAAAGCATTTGGAAAGGAACAGAAAGGACAAAGACTCCAAGGTACACATTGTACTCT

Coding sequence (CDS)

ATGTGTGCTTTTTTATTACTATCAAAAGGGATTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGGTTAGAAAGCATTTGGAAAGGAACAGAAAGGACAAAGACTCCAAGGTACACATTGTACTC

Protein sequence

MCAFLLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL

Homology

[Close]

BLAST of MELO3C001168 vs. NCBI nr
Match: KAA0051790.1 (putative ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MCAFLLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIV 48
          MC FLLLSKG+APEIPEDLYHLIKKVVS+RKHLERNRKDKDSK   V
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]

BLAST of MELO3C001168 vs. NCBI nr
Match: KAA0025155.1 (uncharacterized protein E6C27_scaffold2405G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 8.8e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  MCAFLLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSK 44
          MC FLLLSKG+APEI EDLYHLIKKVVS+RKHLERNRKDKDSK
Sbjct: 1  MCVFLLLSKGLAPEISEDLYHLIKKVVSIRKHLERNRKDKDSK 43

[Close]

BLAST of MELO3C001168 vs. NCBI nr
Match: VDD87991.1 (unnamed protein product [Enterobius vermicularis])

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-11
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+APEIPEDLYHLIKK VS+RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLIL 117

[Close]

BLAST of MELO3C001168 vs. NCBI nr
Match: XP_041527338.1 (40S ribosomal protein S13-like [Microtus oregoni])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+AP++PEDLYHLIKK V+VRKHLERNRKDKD+K H++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFHLIL 117

[Close]

BLAST of MELO3C001168 vs. NCBI nr
Match: MXQ84898.1 (hypothetical protein [Bos mutus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+AP++PEDLYHLIKK V+VRKHLERNRKDKD+K H++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFHLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-13
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L +KG+APEIPEDLYHLIKK V++RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-13
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L +KG+APEIPEDLYHLIKK V++RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.2e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L + G+APEIPEDLYHLIKK VS+RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot
Match: Q56JX8 (40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-12
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+AP++PEDLYHLIKK V+VRKHLERNRKDKD+K  ++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot
Match: Q6ITC7 (40S ribosomal protein S13 OS=Gallus gallus OX=9031 GN=RPS13 PE=2 SV=3)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-12
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+AP++PEDLYHLIKK V+VRKHLERNRKDKD+K  ++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy TrEMBL
Match: A0A5A7U9F0 (Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001980 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MCAFLLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIV 48
          MC FLLLSKG+APEIPEDLYHLIKKVVS+RKHLERNRKDKDSK   V
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]

BLAST of MELO3C001168 vs. ExPASy TrEMBL
Match: A0A5A7SL06 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00020 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-13
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  MCAFLLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSK 44
          MC FLLLSKG+APEI EDLYHLIKKVVS+RKHLERNRKDKDSK
Sbjct: 1  MCVFLLLSKGLAPEISEDLYHLIKKVVSIRKHLERNRKDKDSK 43

[Close]

BLAST of MELO3C001168 vs. ExPASy TrEMBL
Match: A0A0N4V0I2 (40S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+APEIPEDLYHLIKK VS+RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy TrEMBL
Match: A0A0N5AK96 (40S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+APEIPEDLYHLIKK VS+RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLIL 117

[Close]

BLAST of MELO3C001168 vs. ExPASy TrEMBL
Match: A0A6P3IQD5 (40S ribosomal protein S13 OS=Bison bison bison OX=43346 GN=LOC105000012 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.2e-11
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L SKG+AP++PEDLYHLIKK V+VRKHLERNRKDKD+K H++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFHLIL 117

[Close]

BLAST of MELO3C001168 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L + G+APEIPEDLYHLIKK V++RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

[Close]

BLAST of MELO3C001168 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 5   LLLSKGIAPEIPEDLYHLIKKVVSVRKHLERNRKDKDSKVHIVL 49
           +L + G+APEIPEDLYHLIKK V++RKHLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

The following BLAST results are available for this feature:

BLAST of MELO3C001168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051790.1	6.1e-14	87.23	putative ribosomal protein S13 [Cucumis melo var. makuwa]	[more]
KAA0025155.1	8.8e-13	90.70	uncharacterized protein E6C27_scaffold2405G00020 [Cucumis melo var. makuwa]	[more]
VDD87991.1	8.3e-11	79.55	unnamed protein product [Enterobius vermicularis]	[more]
XP_041527338.1	1.1e-10	75.00	40S ribosomal protein S13-like [Microtus oregoni]	[more]
MXQ84898.1	1.1e-10	75.00	hypothetical protein [Bos mutus]	[more]

BLAST of MELO3C001168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62299	5.4e-13	75.00	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]
P62300	5.4e-13	75.00	40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2	[more]
P62302	9.2e-13	75.00	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
Q56JX8	1.2e-12	72.73	40S ribosomal protein S13 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3	[more]
Q6ITC7	1.2e-12	72.73	40S ribosomal protein S13 OS=Gallus gallus OX=9031 GN=RPS13 PE=2 SV=3	[more]

BLAST of MELO3C001168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9F0	3.0e-14	87.23	Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7SL06	4.3e-13	90.70	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0N4V0I2	4.0e-11	79.55	40S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 ...	[more]
A0A0N5AK96	4.0e-11	79.55	40S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1	[more]
A0A6P3IQD5	5.2e-11	75.00	40S ribosomal protein S13 OS=Bison bison bison OX=43346 GN=LOC105000012 PE=3 SV=...	[more]

BLAST of MELO3C001168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	1.5e-13	72.73	Ribosomal protein S13/S15	[more]
AT4G00100.1	1.5e-13	72.73	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.10		coord: 13..48 e-value: 5.5E-17 score: 63.8
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 6..48
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 6..48
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 9..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001168.1	MELO3C001168.1	mRNA