MELO3C001017 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001017
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNase III domain-containing protein
Location	chr01: 3213941 .. 3214413 (-)
RNA-Seq Expression	MELO3C001017
Synteny	MELO3C001017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTGATAGAGCAATAGAGGAAGAGAAAGAAATCCCCACAGCCAACAAAATAAAATTAAGTTTTGGTTTGAGAATCCCCAAAATCCCGGCATGGAAGGAGAAGAACAGAGAGACGGAAGCAGAGGCGGAGAGGCGGTCAACGGCAGCGATTCACCGGCGAGTTTGGACGGAATCGAAGCTATTTTGAACTACGAGTTTCGAGACAAGAGATTACTGGAAGAGGCTTTTACGGACGCTTCCTACTCACCGGAAAATTGCTCGTCGTTCGAACGATTAGAATACGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATACTTCTCGAATCCAAATCTGTCGCCGGGTTCGTTGACTCGCCTCCGAGCTGCGAATGTGGACACGGAAAAACTTGCTCGAGTAGCTATTACTCATGGATTTCATCGGTATCTTCGCCACAACAAAGCCGATCTTCATCAAAAAGTAA

mRNA sequence

CATTTGATAGAGCAATAGAGGAAGAGAAAGAAATCCCCACAGCCAACAAAATAAAATTAAGTTTTGGTTTGAGAATCCCCAAAATCCCGGCATGGAAGGAGAAGAACAGAGAGACGGAAGCAGAGGCGGAGAGGCGGTCAACGGCAGCGATTCACCGGCGAGTTTGGACGGAATCGAAGCTATTTTGAACTACGAGTTTCGAGACAAGAGATTACTGGAAGAGGCTTTTACGGACGCTTCCTACTCACCGGAAAATTGCTCGTCGTTCGAACGATTAGAATACGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATACTTCTCGAATCCAAATCTGTCGCCGGGTTCGTTGACTCGCCTCCGAGCTGCGAATGTGGACACGGAAAAACTTGCTCGAGTAGCTATTACTCATGGATTTCATCGGTATCTTCGCCACAACAAAGCCGATCTTCATCAAAAAGTAA

Coding sequence (CDS)

ATGGAAGGAGAAGAACAGAGAGACGGAAGCAGAGGCGGAGAGGCGGTCAACGGCAGCGATTCACCGGCGAGTTTGGACGGAATCGAAGCTATTTTGAACTACGAGTTTCGAGACAAGAGATTACTGGAAGAGGCTTTTACGGACGCTTCCTACTCACCGGAAAATTGCTCGTCGTTCGAACGATTAGAATACGTCGGAGATTCGGTGTTGAATTTTCTGATAACGAGAGAACAATACTTCTCGAATCCAAATCTGTCGCCGGGTTCGTTGACTCGCCTCCGAGCTGCGAATGTGGACACGGAAAAACTTGCTCGAGTAGCTATTACTCATGGATTTCATCGGTATCTTCGCCACAACAAAGCCGATCTTCATCAAAAAGTA

Protein sequence

MEGEEQRDGSRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV

Homology

[Close]

BLAST of MELO3C001017 vs. NCBI nr
Match: XP_004144598.1 (ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein Csa_020414 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 4.4e-59
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   EQRDGSR--GGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 64
           E +DGSR  GGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL
Sbjct: 12  EGKDGSRGGGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 71

Query: 65  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 124
           EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD
Sbjct: 72  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 131

Query: 125 LHQKV 128
           LHQK+
Sbjct: 132 LHQKI 136

[Close]

BLAST of MELO3C001017 vs. NCBI nr
Match: XP_038888348.1 (ribonuclease 3-like protein 3 [Benincasa hispida])

HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56
Identity = 118/134 (88.06%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MEGEEQR-------DGSRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSP 60
           ME EEQR         S GGEAVNG DS ASLDGIEAILNYEFRDKRLLEEAFTDASYSP
Sbjct: 1   MEEEEQRVVFLEEEGSSGGGEAVNGGDSAASLDGIEAILNYEFRDKRLLEEAFTDASYSP 60

Query: 61  ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH 120
           ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH
Sbjct: 61  ENCSSFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFH 120

Query: 121 RYLRHNKADLHQKV 128
           RYLRHNK DLH K+
Sbjct: 121 RYLRHNKPDLHPKI 134

[Close]

BLAST of MELO3C001017 vs. NCBI nr
Match: KAG6572281.1 (Endoribonuclease Dicer-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.7 bits (535), Expect = 7.4e-51
Identity = 107/127 (84.25%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MEGEEQRDGSRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFE 60
           MEG   R      E   G  + ASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFE
Sbjct: 1   MEGRGDRGDLLKQEGRGGESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFE 60

Query: 61  RLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNK 120
           RLEYVGDSVLNFLITREQYFSNPNLSPG+LTRLRAANVDTEKLARVAITHGFHRYLRHNK
Sbjct: 61  RLEYVGDSVLNFLITREQYFSNPNLSPGTLTRLRAANVDTEKLARVAITHGFHRYLRHNK 120

Query: 121 ADLHQKV 128
           ADL QK+
Sbjct: 121 ADLDQKI 127

[Close]

BLAST of MELO3C001017 vs. NCBI nr
Match: XP_023554575.1 (ribonuclease 3-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 7.4e-51
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 14  EAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFL 73
           E   G  + ASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFL
Sbjct: 14  EGRGGESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFL 73

Query: 74  ITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           ITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADL QK+
Sbjct: 74  ITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLDQKI 127

[Close]

BLAST of MELO3C001017 vs. NCBI nr
Match: XP_022969213.1 (ribonuclease 3-like protein 3 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 9.7e-51
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 18  GSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE 77
           G  + ASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE
Sbjct: 18  GESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE 77

Query: 78  QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADL QK+
Sbjct: 78  QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLDQKI 127

[Close]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot
Match: Q69KJ0 (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-23
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 22  PASLDGIEAILNYEFRDKRLLEEAFTDAS--YSPENCSSFERLEYVGDSVLNFLITREQY 81
           P  +  +E++L YEFRDK L+EEA T  S  Y      ++ERLEY+GD+VL  +++RE +
Sbjct: 36  PGEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVF 95

Query: 82  FSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            +   L PG LTRLRAANVD EKLARVA+ HG H +LRH   +L  ++
Sbjct: 96  LTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQI 143

[Close]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot
Match: Q9SP32 (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 27   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 86
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1561 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1620

Query: 87   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            PG LT LRAA V+ E  ARVA+ H  H YLRH  + L +++
Sbjct: 1621 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1661

[Close]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot
Match: Q9LTQ0 (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 10  SRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSV 69
           S    +V  S    S++ +E ILNY+F +K LL+EA T  S +  +  S+ERLE++GDS 
Sbjct: 45  SPSAPSVPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCT--DFPSYERLEFIGDSA 104

Query: 70  LNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           +   I+   Y + P+L P  L+ LRAANV TEKLARV++ HG + +LR N   L +KV
Sbjct: 105 IGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKV 160

[Close]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot
Match: Q6ATG6 (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-19
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 28  IEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSP 87
           +E +L Y+FRD RLLEEA T  S++ ++  S++RLE+VGDS L    +   Y +NP L P
Sbjct: 40  VERLLRYQFRDGRLLEEALTHQSFA-DDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGP 99

Query: 88  GSLTRLRAANVDTEKLARVAITHGFHRYLRHN 120
           G L+ LRAAN+ TEKLARVA+ H  +  LR N
Sbjct: 100 GPLSTLRAANISTEKLARVAVRHDLYPLLRRN 130

[Close]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot
Match: Q8LMR2 (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 24   SLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNP 83
            + D ++ +L  EF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  
Sbjct: 1537 NFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYT 1596

Query: 84   NLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            +L PG LT LRAA V+ E  ARVA+ H  H +LRH  + L  ++
Sbjct: 1597 DLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQI 1640

[Close]

BLAST of MELO3C001017 vs. ExPASy TrEMBL
Match: A0A0A0K1J8 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   EQRDGSR--GGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 64
           E +DGSR  GGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL
Sbjct: 12  EGKDGSRGGGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 71

Query: 65  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 124
           EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD
Sbjct: 72  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 131

Query: 125 LHQKV 128
           LHQK+
Sbjct: 132 LHQKI 136

[Close]

BLAST of MELO3C001017 vs. ExPASy TrEMBL
Match: A0A6J1I0C1 (ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.7e-51
Identity = 103/110 (93.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 18  GSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE 77
           G  + ASLDG+EAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE
Sbjct: 18  GESTAASLDGMEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITRE 77

Query: 78  QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADL QK+
Sbjct: 78  QYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLDQKI 127

[Close]

BLAST of MELO3C001017 vs. ExPASy TrEMBL
Match: A0A6J1GKQ4 (ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.9e-50
Identity = 105/125 (84.00%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 3   GEEQRDGSRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERL 62
           G+  +   RGGE+     + ASLDG+EAIL YEFRDKRLLEEAFTDASYSPENCSSFERL
Sbjct: 8   GDLLKQEGRGGES-----TAASLDGMEAILKYEFRDKRLLEEAFTDASYSPENCSSFERL 67

Query: 63  EYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 122
           EYVGDSVLNFLITREQYFSNPNLSPG+LTRLRAANVDTEKLARVAITHGFHRYLRHNKAD
Sbjct: 68  EYVGDSVLNFLITREQYFSNPNLSPGTLTRLRAANVDTEKLARVAITHGFHRYLRHNKAD 127

Query: 123 LHQKV 128
           L QK+
Sbjct: 128 LDQKI 127

[Close]

BLAST of MELO3C001017 vs. ExPASy TrEMBL
Match: A0A6J1C375 (ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 96/109 (88.07%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 19  SDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQ 78
           S+SP SL+ +EAIL YEFRDKRLLEEAFTD+SYSPENC SFERLEYVGDSVLNFLITREQ
Sbjct: 33  SESPPSLEEVEAILGYEFRDKRLLEEAFTDSSYSPENCFSFERLEYVGDSVLNFLITREQ 92

Query: 79  YFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           YFSNP+LSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNK+DL +K+
Sbjct: 93  YFSNPSLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKSDLDKKI 141

[Close]

BLAST of MELO3C001017 vs. ExPASy TrEMBL
Match: A0A371F4U1 (Ribonuclease 3-like protein 3 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_47083 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 22  PASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFS 81
           P SL+G+EAIL YEF++K LLEEAFT ASY  E C S+ERLEYVGD+VLN L+T+EQ+F 
Sbjct: 44  PQSLNGVEAILKYEFKNKCLLEEAFTHASYPNEKCLSYERLEYVGDAVLNLLVTKEQFFE 103

Query: 82  NPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            P+L  G LTRLRAANVDTEKLARV I HGFHR+LRH K  L Q++
Sbjct: 104 YPDLDSGRLTRLRAANVDTEKLARVCIRHGFHRFLRHRKPRLEQQI 149

[Close]

BLAST of MELO3C001017 vs. TAIR 10
Match: AT4G15417.1 (RNAse II-like 1 )

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 9   GSRGGEAVNGSDSPAS-----------LDGIEAILNYEFRDKRLLEEAFTDASYSPENCS 68
           GS+   A++G D+  +           ++ +E ILNY+F+DK LL +AFTDASY  +   
Sbjct: 2   GSQLSNAIDGKDNTKTIGSADPDQLMEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSE 61

Query: 69  SFERLEYVGDSVLNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLR 128
           S+E LE +GDS+LN  I  +     P  +PG LT+LRA NVDTEKLARVA+ H  + YLR
Sbjct: 62  SYELLELLGDSILNMGIIYDFIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLR 121

[Close]

BLAST of MELO3C001017 vs. TAIR 10
Match: AT1G01040.1 (dicer-like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-21
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 27   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 86
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1561 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1620

Query: 87   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            PG LT LRAA V+ E  ARVA+ H  H YLRH  + L +++
Sbjct: 1621 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1661

[Close]

BLAST of MELO3C001017 vs. TAIR 10
Match: AT1G01040.2 (dicer-like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-21
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 27   GIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 86
            G+E  L YEF++K LL EA T AS      S ++RLE+VGD+VL+ LITR  +F+  +L 
Sbjct: 1562 GLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLP 1621

Query: 87   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            PG LT LRAA V+ E  ARVA+ H  H YLRH  + L +++
Sbjct: 1622 PGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQI 1662

[Close]

BLAST of MELO3C001017 vs. TAIR 10
Match: AT3G20420.1 (RNAse THREE-like protein 2 )

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-21
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 10  SRGGEAVNGSDSPASLDGIEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSV 69
           S    +V  S    S++ +E ILNY+F +K LL+EA T  S +  +  S+ERLE++GDS 
Sbjct: 45  SPSAPSVPVSSEMESMEAVEKILNYKFSNKSLLKEAITHTSCT--DFPSYERLEFIGDSA 104

Query: 70  LNFLITREQYFSNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
           +   I+   Y + P+L P  L+ LRAANV TEKLARV++ HG + +LR N   L +KV
Sbjct: 105 IGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKV 160

[Close]

BLAST of MELO3C001017 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 28   IEAILNYEFRDKRLLEEAFTDASY-SPENCSSFERLEYVGDSVLNFLITREQYFSNPNLS 87
            +E++LNY F DK LL EA T  SY  PE    ++RLE++GDSVL++LIT+  Y   P LS
Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211

Query: 88   PGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKV 128
            PG LT +R+A+V+ E  A VA+    H+++ +    LH+ +
Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1252

The following BLAST results are available for this feature:

BLAST of MELO3C001017 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144598.1	4.4e-59	96.00	ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein...	[more]
XP_038888348.1	5.9e-56	88.06	ribonuclease 3-like protein 3 [Benincasa hispida]	[more]
KAG6572281.1	7.4e-51	84.25	Endoribonuclease Dicer-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554575.1	7.4e-51	91.23	ribonuclease 3-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022969213.1	9.7e-51	93.64	ribonuclease 3-like protein 3 [Cucurbita maxima]	[more]

BLAST of MELO3C001017 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69KJ0	3.1e-23	50.00	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0...	[more]
Q9SP32	1.9e-20	49.50	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV...	[more]
Q9LTQ0	1.2e-19	44.07	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1	[more]
Q6ATG6	4.6e-19	51.09	Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0...	[more]
Q8LMR2	2.3e-18	45.19	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]

BLAST of MELO3C001017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1J8	2.1e-59	96.00	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 P...	[more]
A0A6J1I0C1	4.7e-51	93.64	ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 S...	[more]
A0A6J1GKQ4	8.9e-50	84.00	ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4...	[more]
A0A6J1C375	1.8e-47	88.07	ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=...	[more]
A0A371F4U1	1.2e-33	68.87	Ribonuclease 3-like protein 3 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_4...	[more]

BLAST of MELO3C001017 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15417.1	1.1e-23	44.62	RNAse II-like 1	[more]
AT1G01040.1	1.3e-21	49.50	dicer-like 1	[more]
AT1G01040.2	1.3e-21	49.50	dicer-like 1	[more]
AT3G20420.1	8.5e-21	44.07	RNAse THREE-like protein 2	[more]
AT3G03300.1	1.2e-17	44.55	dicer-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 40..127 e-value: 4.7E-4 score: 27.1
IPR000999	Ribonuclease III domain	PFAM	PF00636	Ribonuclease_3	coord: 60..125 e-value: 3.8E-14 score: 53.2
IPR000999	Ribonuclease III domain	PROSITE	PS00517	RNASE_3_1	coord: 60..68
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 25..127 score: 25.655827
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 40..125 e-value: 3.8551E-28 score: 98.0686
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 16..127 e-value: 3.3E-32 score: 113.6
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 24..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR14950	DICER-RELATED	coord: 19..127
None	No IPR available	PANTHER	PTHR14950:SF54	RNASE II-LIKE 1	coord: 19..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001017.1	MELO3C001017.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0004525	ribonuclease III activity