MELO3C000937 (gene) Melon (DHL92) v4

Overview
NameMELO3C000937
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr06: 14334836 .. 14335457 (+)
RNA-Seq ExpressionMELO3C000937
SyntenyMELO3C000937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACAGAGATCGGCTCGGCTCGGCTTGGCGCAAGGATCTTGCGCGTGCGGCTCGGCTCGCGTCAGCAAGGAGGCGCGGCTCGGCTTGCAGTGCAGGCGGCGCGGCGCGGCTTGTGGTGCAGACCGGCGCGGCTCGTGGCGTGGGATGGGCGCGCGCGGGCTCGGCTTGCGACTCGGAGCGGGCGTGCGCGAGCGTGGAGCGGGTTCGGTTTCGGGCGAGCGGGCGCGGATCGGTTTCGGGTTCGGGCGTCGGCCGAAACGTGGGTTCGGCTTCGACGGCTGGAGGCACGCGCGGCGGATCGGCTTCGAGTGGCGGCTGCGGGAGACGGCTGTGCGCGGATCGAAGCGGCTCCCTTCGGCTTCGATCGGAGCGGCGCGGCTGGCTGGCTTCGGCTGTCTCGACGAGTCCCGGCTGCGCTGCGTCGGATCTACGCGGCGCGGCGTGGCTGGCTGCGGATACGGCGCTCGGCTGCGCGGATGAGGAGCGGCTCCGGATTCGGCTTGCAGACGCGGCGCGGCTGGGATGGTGGTTCGGCTCTACTACGGCCGGCTCCGAGGGTTATTTTCGCAGCTGGCGGCGGTGGCGTGCGGTGGCGTGCGGCGGCGTGCGGCGGCGTGCGGC

mRNA sequence

GAGACAGAGATCGGCTCGGCTCGGCTTGGCGCAAGGATCTTGCGCGTGCGGCTCGGCTCGCGTCAGCAAGGAGGCGCGGCTCGGCTTGCAGTGCAGGCGGCGCGGCGCGGCTTGTGGTGCAGACCGGCGCGGCTCGTGGCGTGGGATGGGCGCGCGCGGGCTCGGCTTGCGACTCGGAGCGGGCGTGCGCGAGCGTGGAGCGGGTTCGGTTTCGGGCGAGCGGGCGCGGATCGGTTTCGGGTTCGGGCGTCGGCCGAAACGTGGGTTCGGCTTCGACGGCTGGAGGCACGCGCGGCGGATCGGCTTCGAGTGGCGGCTGCGGGAGACGGCTGTGCGCGGATCGAAGCGGCTCCCTTCGGCTTCGATCGGAGCGGCGCGGCTGGCTGGCTTCGGCTGTCTCGACGAGTCCCGGCTGCGCTGCGTCGGATCTACGCGGCGCGGCGTGGCTGGCTGCGGATACGGCGCTCGGCTGCGCGGATGAGGAGCGGCTCCGGATTCGGCTTGCAGACGCGGCGCGGCTGGGATGGTGGTTCGGCTCTACTACGGCCGGCTCCGAGGGTTATTTTCGCAGCTGGCGGCGGTGGCGTGCGGTGGCGTGCGGCGGCGTGCGGCGGCGTGCGGC

Coding sequence (CDS)

GAGACAGAGATCGGCTCGGCTCGGCTTGGCGCAAGGATCTTGCGCGTGCGGCTCGGCTCGCGTCAGCAAGGAGGCGCGGCTCGGCTTGCAGTGCAGGCGGCGCGGCGCGGCTTGTGGTGCAGACCGGCGCGGCTCGTGGCGTGGGATGGGCGCGCGCGGGCTCGGCTTGCGACTCGGAGCGGGCGTGCGCGAGCGTGGAGCGGGTTCGGTTTCGGGCGAGCGGGCGCGGATCGGTTTCGGGTTCGGGCGTCGGCCGAAACGTGGGTTCGGCTTCGACGGCTGGAGGCACGCGCGGCGGATCGGCTTCGAGTGGCGGCTGCGGGAGACGGCTGTGCGCGGATCGAAGCGGCTCCCTTCGGCTTCGATCGGAGCGGCGCGGCTGGCTGGCTTCGGCTGTCTCGACGAGTCCCGGCTGCGCTGCGTCGGATCTACGCGGCGCGGCGTGGCTGGCTGCGGATACGGCGCTCGGCTGCGCGGATGAGGAGCGGCTCCGGATTCGGCTTGCAGACGCGGCGCGGCTGGGATGGTGGTTCGGCTCTACTACGGCCGGCTCCGAGGGTTATTTTCGCAGCTGGCGGCGGTGGCGTGCGGTGGCGTGCGGCGGCGTGCGGCGGCGTGCGG

Protein sequence

ETEIGSARLGARILRVRLGSRQQGGAARLAVQAARRGLWCRPARLVAWDGRARARLATRSGRARAWSGFGFGRAGADRFRVRASAETWVRLRRLEARAADRLRVAAAGDGCARIEAAPFGFDRSGAAGWLRLSRRVPAALRRIYAARRGWLRIRRSAARMRSGSGFGLQTRRGWDGGSALLRPAPRVIFAAGGGGVRWRAAACGGVR
Homology
BLAST of MELO3C000937 vs. NCBI nr
Match: KAA0056258.1 (hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0

Query: 126 AAGWLRLSRRVPAALRRIYAARRGWLRIRRSAARMRSGSGFGLQTR 172
           AAGWLRLSRRVPAALRRIYAARRGWL+ RRSAARMRSGSGFGLQTR
Sbjct: 207 AAGWLRLSRRVPAALRRIYAARRGWLQTRRSAARMRSGSGFGLQTR 252

BLAST of MELO3C000937 vs. NCBI nr
Match: KAA0057147.1 (hypothetical protein E6C27_scaffold741G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-05
Identity = 55/122 (45.08%), Postives = 63/122 (51.64%), Query Frame = 0

Query: 50  GRARARLATRSGRARAWSGFGFGRAGADRFRVRASAETWVRLRRLEARAADRLRVAAAGD 109
           G A+ARL +   R     G+   R GA      A     + + RL A    R   AA G+
Sbjct: 22  GLAQARLGSACNREEMRLGYAKTR-GAASHTDAAHTRRGLDVARLHAERVGR-GAAARGE 81

Query: 110 GCARIEAAPFGFDRSGAAGWLRLSRRVPAALRRIYAARRGWLRIRRSAARMRSGSGFGLQ 169
           G  R      G D    A  LRL  R     RRIYAARRGWL+ RRSAARMRSGSGFGLQ
Sbjct: 82  GWTRRGCTRRGLD----AARLRLRLRA-RXXRRIYAARRGWLQTRRSAARMRSGSGFGLQ 136

Query: 170 TR 172
           T+
Sbjct: 142 TQ 136

BLAST of MELO3C000937 vs. NCBI nr
Match: KAA0037375.1 (hypothetical protein E6C27_scaffold278G00810 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-04
Identity = 66/169 (39.05%), Postives = 75/169 (44.38%), Query Frame = 0

Query: 17  RLGSRQQGGAARLAVQAARRGLWCRPARLVAWDGRARARLATRSGRARAWSGF------- 76
           RLG    G     A  A R   W R  RL AWDGRARARLATRSGRARAWSG        
Sbjct: 32  RLGGSAGGAGTGSARSADRHCSWRRQVRLTAWDGRARARLATRSGRARAWSGLTLKFSDS 91

Query: 77  GFGRAGADRFRVRASAETWVRLRRL-EARAADRLRVAAAGDGCARIEAAPFGFDRSGAAG 136
             G  G     +  S E   R R + E + A R+    A  G  R+  A FG  R   A 
Sbjct: 92  AAGLVGDSFLSLGGSVERGFRSRGITEYQCALRI---CASFGSTRLICASFGSTRLICAS 151

Query: 137 WLRLSRRVPAALRRIYAARRGWLRI-------RRSAARMRSG----SGF 167
           + R +R + A     Y   R   R+       RR A RMR G    SGF
Sbjct: 152 F-RSTRLICA----FYGTTRLLCRVGVQRGADRREAGRMREGHMDASGF 192

BLAST of MELO3C000937 vs. ExPASy TrEMBL
Match: A0A5A7UMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00260 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0

Query: 126 AAGWLRLSRRVPAALRRIYAARRGWLRIRRSAARMRSGSGFGLQTR 172
           AAGWLRLSRRVPAALRRIYAARRGWL+ RRSAARMRSGSGFGLQTR
Sbjct: 207 AAGWLRLSRRVPAALRRIYAARRGWLQTRRSAARMRSGSGFGLQTR 252

BLAST of MELO3C000937 vs. ExPASy TrEMBL
Match: A0A5A7UR82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00080 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-05
Identity = 55/122 (45.08%), Postives = 63/122 (51.64%), Query Frame = 0

Query: 50  GRARARLATRSGRARAWSGFGFGRAGADRFRVRASAETWVRLRRLEARAADRLRVAAAGD 109
           G A+ARL +   R     G+   R GA      A     + + RL A    R   AA G+
Sbjct: 22  GLAQARLGSACNREEMRLGYAKTR-GAASHTDAAHTRRGLDVARLHAERVGR-GAAARGE 81

Query: 110 GCARIEAAPFGFDRSGAAGWLRLSRRVPAALRRIYAARRGWLRIRRSAARMRSGSGFGLQ 169
           G  R      G D    A  LRL  R     RRIYAARRGWL+ RRSAARMRSGSGFGLQ
Sbjct: 82  GWTRRGCTRRGLD----AARLRLRLRA-RXXRRIYAARRGWLQTRRSAARMRSGSGFGLQ 136

Query: 170 TR 172
           T+
Sbjct: 142 TQ 136

BLAST of MELO3C000937 vs. ExPASy TrEMBL
Match: A0A5A7T7D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00810 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 66/169 (39.05%), Postives = 75/169 (44.38%), Query Frame = 0

Query: 17  RLGSRQQGGAARLAVQAARRGLWCRPARLVAWDGRARARLATRSGRARAWSGF------- 76
           RLG    G     A  A R   W R  RL AWDGRARARLATRSGRARAWSG        
Sbjct: 32  RLGGSAGGAGTGSARSADRHCSWRRQVRLTAWDGRARARLATRSGRARAWSGLTLKFSDS 91

Query: 77  GFGRAGADRFRVRASAETWVRLRRL-EARAADRLRVAAAGDGCARIEAAPFGFDRSGAAG 136
             G  G     +  S E   R R + E + A R+    A  G  R+  A FG  R   A 
Sbjct: 92  AAGLVGDSFLSLGGSVERGFRSRGITEYQCALRI---CASFGSTRLICASFGSTRLICAS 151

Query: 137 WLRLSRRVPAALRRIYAARRGWLRI-------RRSAARMRSG----SGF 167
           + R +R + A     Y   R   R+       RR A RMR G    SGF
Sbjct: 152 F-RSTRLICA----FYGTTRLLCRVGVQRGADRREAGRMREGHMDASGF 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056258.15.9e-1395.65hypothetical protein E6C27_scaffold226G00260 [Cucumis melo var. makuwa][more]
KAA0057147.17.7e-0545.08hypothetical protein E6C27_scaffold741G00080 [Cucumis melo var. makuwa][more]
KAA0037375.15.0e-0439.05hypothetical protein E6C27_scaffold278G00810 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMD82.8e-1395.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UR823.7e-0545.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T7D82.4e-0439.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C000937.1MELO3C000937.1mRNA