MELO3C000875 (gene) Melon (DHL92) v4

Overview
NameMELO3C000875
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlial fibrillary acidic protein-like
Locationchr05: 17513818 .. 17514068 (+)
RNA-Seq ExpressionMELO3C000875
SyntenyMELO3C000875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
gaaaagacttgaaatgattaagagagatgaacctgttcttgcaacagagaataggggttggggaagaagtgaagcaatgggtacaacaagctacaacttctcagaggcaattggaagaagcaaaacgacatcttacaagcagttgggttgaaaagagtgagcaaggttgctgtagaatttgaaagtgcattagatgagcaagcgacatcaactcaaaaatcacgcataaattgagactttaccgaatttaa

mRNA sequence

gaaaagacttgaaatgattaagagagatgaacctgttcttgcaacagagaataggggttggggaagaagtgaagcaatgggtacaacaagctacaacttctcagaggcaattggaagaagcaaaacgacatcttacaagcagttgggttgaaaagagtgagcaaggttgctgtagaatttgaaagtgcattagatgagcaagcgacatcaactcaaaaatcacgcataaattgagactttaccgaatttaa

Coding sequence (CDS)

atgaacctgttcttgcaacagagaataggggttggggaagaagtgaagcaatgggtacaacaagctacaacttctcagaggcaattggaagaagcaaaacgacatcttacaagcagttgggttgaaaagagtgagcaaggttgctgtagaatttga

Protein sequence

MNLFLQQRIGVGEEVKQWVQQATTSQRQLEEAKRHLTSSWVEKSEQGCCRI
Homology
[Close]
BLAST of MELO3C000875 vs. NCBI nr
Match: KAA0056193.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 2   NLFLQQRIGVGEEVKQWVQQATTSQRQLEEAKRHLT 38
           ++F  +  G+ EEVKQWVQQAT SQRQLEEAKRHLT
Sbjct: 81  HVFATENEGLREEVKQWVQQATASQRQLEEAKRHLT 116

[Close]
BLAST of MELO3C000875 vs. NCBI nr
Match: KAA0056688.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 10 GVGEEVKQWVQQATTSQRQLEEAKRHLT 38
          G+ EEVKQWVQQATTSQRQLEEAKRHLT
Sbjct: 27 GLREEVKQWVQQATTSQRQLEEAKRHLT 54

[Close]
BLAST of MELO3C000875 vs. ExPASy TrEMBL
Match: A0A5A7UNL9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00160 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 10 GVGEEVKQWVQQATTSQRQLEEAKRHLT 38
          G+ EEVKQWVQQATTSQRQLEEAKRHLT
Sbjct: 27 GLREEVKQWVQQATTSQRQLEEAKRHLT 54

[Close]
BLAST of MELO3C000875 vs. ExPASy TrEMBL
Match: A0A5A7UJQ2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00200 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 2   NLFLQQRIGVGEEVKQWVQQATTSQRQLEEAKRHLT 38
           ++F  +  G+ EEVKQWVQQAT SQRQLEEAKRHLT
Sbjct: 81  HVFATENEGLREEVKQWVQQATASQRQLEEAKRHLT 116

The following BLAST results are available for this feature:
BLAST of MELO3C000875 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056193.18.0e-0472.22glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0056688.18.0e-0492.86glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C000875 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C000875 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UNL93.9e-0492.86Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UJQ23.9e-0472.22Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C000875 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C000875.1MELO3C000875.1mRNA