MELO3C000835 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000835
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Coatomer subunit beta'
Location	chr01: 26150662 .. 26150817 (+)
RNA-Seq Expression	MELO3C000835
Synteny	MELO3C000835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGATTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAG

mRNA sequence

ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGATTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAG

Coding sequence (CDS)

ATGAAAAGTAAGGAACTATCATTATTTTATGTTGTTCCATTGTTAGCCGAGCACATCTATGGAGGAACTCTGTTAACCATGTGTCCCAATGATTTTATATGTTTCTATGATTGGGCAGAGGGCAGACTGATCCGCCGTATTGATGTAAATGTGAAG

Protein sequence

MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK

Homology

[Close]

BLAST of MELO3C000835 vs. NCBI nr
Match: KAA0062345.1 (coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 4.7e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVK
Sbjct: 345 MKSKELSLFYVFPLLAEHIYGGTLLAMCTNDFICFYDWAEGRLIRRIDVNVK 396

[Close]

BLAST of MELO3C000835 vs. NCBI nr
Match: XP_008460512.2 (PREDICTED: coatomer subunit beta'-1-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 4.7e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVK
Sbjct: 59  MKSKELSLFYVFPLLAEHIYGGTLLAMCTNDFICFYDWAEGRLIRRIDVNVK 110

[Close]

BLAST of MELO3C000835 vs. NCBI nr
Match: KAA0034799.1 (coatomer subunit beta'-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 6.2e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYVVPLLAEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVK
Sbjct: 146 MKSKELSLFYVVPLLAEHIYGGTLLAMCSNDFICFYDWAESRLIRRIDVNVK 197

[Close]

BLAST of MELO3C000835 vs. NCBI nr
Match: XP_016901863.1 (PREDICTED: coatomer subunit beta'-1-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
          MKSKELSLFYVVPLL EHIYGGTLL MC NDFICFYDWAEGRLI RIDVNVK
Sbjct: 1  MKSKELSLFYVVPLLVEHIYGGTLLAMCSNDFICFYDWAEGRLIHRIDVNVK 52

[Close]

BLAST of MELO3C000835 vs. NCBI nr
Match: XP_022955704.1 (coatomer subunit beta'-2-like [Cucurbita moschata] >XP_022955705.1 coatomer subunit beta'-2-like [Cucurbita moschata] >XP_022955706.1 coatomer subunit beta'-2-like [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVK
Sbjct: 431 AEHIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVK 467

[Close]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot
Match: Q9CAA0 (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-13
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VK
Sbjct: 430 AEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVK 466

[Close]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot
Match: Q6H8D5 (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-13
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 13  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVK
Sbjct: 428 PFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVK 467

[Close]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot
Match: Q6H8D6 (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-13
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 13  PLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           P  AE I+GG LL MC NDFICF+DWAEGR+IRRIDVNVK
Sbjct: 428 PFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVK 467

[Close]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot
Match: Q5VQ78 (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AE I+GG LL MC +DFICFYDWA+ RLIRRIDVNVK
Sbjct: 431 AERIFGGILLAMCSSDFICFYDWADCRLIRRIDVNVK 467

[Close]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot
Match: Q8L828 (Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AE I+GGTLL MC NDFICFYDWAE RLI++IDV VK
Sbjct: 431 AEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVK 467

[Close]

BLAST of MELO3C000835 vs. ExPASy TrEMBL
Match: A0A5A7V8X3 (Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001050 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVK
Sbjct: 345 MKSKELSLFYVFPLLAEHIYGGTLLAMCTNDFICFYDWAEGRLIRRIDVNVK 396

[Close]

BLAST of MELO3C000835 vs. ExPASy TrEMBL
Match: A0A1S3CDW5 (coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC103499311 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYV PLLAEHIYGGTLL MC NDFICFYDWAEGRLIRRIDVNVK
Sbjct: 59  MKSKELSLFYVFPLLAEHIYGGTLLAMCTNDFICFYDWAEGRLIRRIDVNVK 110

[Close]

BLAST of MELO3C000835 vs. ExPASy TrEMBL
Match: A0A5A7T0C6 (Coatomer subunit beta'-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00250 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           MKSKELSLFYVVPLLAEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVK
Sbjct: 146 MKSKELSLFYVVPLLAEHIYGGTLLAMCSNDFICFYDWAESRLIRRIDVNVK 197

[Close]

BLAST of MELO3C000835 vs. ExPASy TrEMBL
Match: A0A1S4E0W2 (coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC107991443 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MKSKELSLFYVVPLLAEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
          MKSKELSLFYVVPLL EHIYGGTLL MC NDFICFYDWAEGRLI RIDVNVK
Sbjct: 1  MKSKELSLFYVVPLLVEHIYGGTLLAMCSNDFICFYDWAEGRLIHRIDVNVK 52

[Close]

BLAST of MELO3C000835 vs. ExPASy TrEMBL
Match: A0A6J1ISR1 (Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111479035 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHIYGGTLL MC NDFICFYDWAE RLIRRIDVNVK
Sbjct: 492 AEHIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVK 528

[Close]

BLAST of MELO3C000835 vs. TAIR 10
Match: AT1G79990.3 (structural molecules )

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-14
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VK
Sbjct: 430 AEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVK 466

[Close]

BLAST of MELO3C000835 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-14
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VK
Sbjct: 645 AEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVK 681

[Close]

BLAST of MELO3C000835 vs. TAIR 10
Match: AT1G79990.5 (structural molecules )

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-14
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AEHI+GGTLLTMC +DFICFYDWAE RLIRRIDV VK
Sbjct: 430 AEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVK 466

[Close]

BLAST of MELO3C000835 vs. TAIR 10
Match: AT3G15980.1 (Coatomer, beta' subunit )

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-12
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AE I+GGTLL MC NDFICFYDWAE RLI++IDV VK
Sbjct: 431 AEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVK 467

[Close]

BLAST of MELO3C000835 vs. TAIR 10
Match: AT3G15980.2 (Coatomer, beta' subunit )

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-12
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 16  AEHIYGGTLLTMCPNDFICFYDWAEGRLIRRIDVNVK 53
           AE I+GGTLL MC NDFICFYDWAE RLI++IDV VK
Sbjct: 431 AEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVK 467

The following BLAST results are available for this feature:

BLAST of MELO3C000835 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062345.1	4.7e-20	94.23	coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]	[more]
XP_008460512.2	4.7e-20	94.23	PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]	[more]
KAA0034799.1	6.2e-20	94.23	coatomer subunit beta'-1-like [Cucumis melo var. makuwa]	[more]
XP_016901863.1	1.4e-19	92.31	PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]	[more]
XP_022955704.1	2.4e-11	91.89	coatomer subunit beta'-2-like [Cucurbita moschata] >XP_022955705.1 coatomer subu...	[more]

BLAST of MELO3C000835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAA0	4.5e-13	86.49	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]
Q6H8D5	4.5e-13	77.50	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g020910...	[more]
Q6H8D6	4.5e-13	77.50	Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q5VQ78	3.2e-11	78.38	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g014390...	[more]
Q8L828	4.2e-11	78.38	Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1	[more]

BLAST of MELO3C000835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8X3	2.3e-20	94.23	Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CDW5	2.3e-20	94.23	coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC103499311 PE=4 SV=1	[more]
A0A5A7T0C6	3.0e-20	94.23	Coatomer subunit beta'-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S4E0W2	6.7e-20	92.31	coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC107991443 PE=4 SV=1	[more]
A0A6J1ISR1	1.1e-11	91.89	Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111479035 PE=3 SV=1	[more]

BLAST of MELO3C000835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79990.3	3.2e-14	86.49	structural molecules	[more]
AT1G79990.1	3.2e-14	86.49	structural molecules	[more]
AT1G79990.5	3.2e-14	86.49	structural molecules	[more]
AT3G15980.1	3.0e-12	78.38	Coatomer, beta' subunit	[more]
AT3G15980.2	3.0e-12	78.38	Coatomer, beta' subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006692	Coatomer, WD associated region	PFAM	PF04053	Coatomer_WDAD	coord: 16..50 e-value: 2.4E-9 score: 36.8
None	No IPR available	PANTHER	PTHR19876	COATOMER	coord: 15..52
None	No IPR available	PANTHER	PTHR19876:SF28	COATOMER SUBUNIT BETA'	coord: 15..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000835.1	MELO3C000835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005198	structural molecule activity