MELO3C000805 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000805
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Sister chromatid cohesion protein
Location	chr02: 24223271 .. 24223633 (+)
RNA-Seq Expression	MELO3C000805
Synteny	MELO3C000805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGCAGTTAGTAGGACGCTCACTCTTCTGTCTTGGATTACTTATTCGCTATGGTAGTCCTTTGTTGAGCAATTCTAGCAATAAGAATGTCGATATTACAAAGAGCCTCAGCTTGTTAAAGATGTACCTACAGACGGAGGATTTGGTTATTAGGGTTAGAGCGCCGTAGGTATCCTCTCACTTGTTATTTTCTGTTGGATTATTTCTGATCTGTTTCCGTATTGAGGCATCCTAATTTGTATATATTTTGTAGGCTTTGGGATTTGTTCTTATTGCGAGGCCTGAATTTATGCTTCAAGAAGATGTTGGGAAAATTATAGAGGAATCATTGTCATCTGGTTCTGATGTTCGTCTTAAG

mRNA sequence

ATGAAATTGCAGTTAGTAGGACGCTCACTCTTCTGTCTTGGATTACTTATTCGCTATGGTAGTCCTTTGTTGAGCAATTCTAGCAATAAGAATGTCGATATTACAAAGAGCCTCAGCTTGTTAAAGATGTACCTACAGACGGAGGATTTGGTTATTAGGGCTTTGGGATTTGTTCTTATTGCGAGGCCTGAATTTATGCTTCAAGAAGATGTTGGGAAAATTATAGAGGAATCATTGTCATCTGGTTCTGATGTTCGTCTTAAG

Coding sequence (CDS)

ATGAAATTGCAGTTAGTAGGACGCTCACTCTTCTGTCTTGGATTACTTATTCGCTATGGTAGTCCTTTGTTGAGCAATTCTAGCAATAAGAATGTCGATATTACAAAGAGCCTCAGCTTGTTAAAGATGTACCTACAGACGGAGGATTTGGTTATTAGGGCTTTGGGATTTGTTCTTATTGCGAGGCCTGAATTTATGCTTCAAGAAGATGTTGGGAAAATTATAGAGGAATCATTGTCATCTGGTTCTGATGTTCGTCTTAAG

Protein sequence

MKLQLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPEFMLQEDVGKIIEESLSSGSDVRLK

Homology

[Close]

BLAST of MELO3C000805 vs. NCBI nr
Match: KAA0058102.1 (nipped-B-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 5   LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE 64
           LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE
Sbjct: 219 LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE 278

Query: 65  FMLQEDVGKIIEESLSSGSDVRLK 89
           FMLQEDVGKIIEESLSSGSDVRLK
Sbjct: 279 FMLQEDVGKIIEESLSSGSDVRLK 302

[Close]

BLAST of MELO3C000805 vs. NCBI nr
Match: XP_031740792.1 (sister chromatid cohesion protein SCC2 isoform X4 [Cucumis sativus] >KGN53644.2 hypothetical protein Csa_014459 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1094 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1153

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFML+EDVGKI+EESLSSGSDVRLK
Sbjct: 1154 LIARPEFMLEEDVGKIVEESLSSGSDVRLK 1183

[Close]

BLAST of MELO3C000805 vs. NCBI nr
Match: XP_031740791.1 (sister chromatid cohesion protein SCC2 isoform X3 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1203 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1262

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFML+EDVGKI+EESLSSGSDVRLK
Sbjct: 1263 LIARPEFMLEEDVGKIVEESLSSGSDVRLK 1292

[Close]

BLAST of MELO3C000805 vs. NCBI nr
Match: XP_031740790.1 (sister chromatid cohesion protein SCC2 isoform X2 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1216 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1275

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFML+EDVGKI+EESLSSGSDVRLK
Sbjct: 1276 LIARPEFMLEEDVGKIVEESLSSGSDVRLK 1305

[Close]

BLAST of MELO3C000805 vs. NCBI nr
Match: XP_011653342.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1220 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1279

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFML+EDVGKI+EESLSSGSDVRLK
Sbjct: 1280 LIARPEFMLEEDVGKIVEESLSSGSDVRLK 1309

[Close]

BLAST of MELO3C000805 vs. ExPASy Swiss-Prot
Match: A5HEI1 (Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            Q+ GRSLFCLGLLIR+G+ L+S S  KN +++  L+L K +L+TED+ ++     ALGF+
Sbjct: 1249 QIAGRSLFCLGLLIRHGNSLISTSGGKNFNLSGCLNLFKRHLRTEDIALKVRSLQALGFI 1308

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPE+ML+ED+GKIIE +L+  ++ R+K
Sbjct: 1309 LIARPEYMLEEDIGKIIETTLADEANGRMK 1338

[Close]

BLAST of MELO3C000805 vs. ExPASy TrEMBL
Match: A0A5A7UQF8 (Nipped-B-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004100 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 5   LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE 64
           LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE
Sbjct: 219 LVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRALGFVLIARPE 278

Query: 65  FMLQEDVGKIIEESLSSGSDVRLK 89
           FMLQEDVGKIIEESLSSGSDVRLK
Sbjct: 279 FMLQEDVGKIIEESLSSGSDVRLK 302

[Close]

BLAST of MELO3C000805 vs. ExPASy TrEMBL
Match: A0A0A0KXR1 (Sister chromatid cohesion protein OS=Cucumis sativus OX=3659 GN=Csa_4G092980 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.7e-34
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 958  QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1017

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFML+EDVGKI+EESLSSGSDVRLK
Sbjct: 1018 LIARPEFMLEEDVGKIVEESLSSGSDVRLK 1047

[Close]

BLAST of MELO3C000805 vs. ExPASy TrEMBL
Match: A0A5A7UVQ1 (Sister chromatid cohesion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00170 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1227 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1286

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFMLQE VGKIIEESLSSGSDVRLK
Sbjct: 1287 LIARPEFMLQEGVGKIIEESLSSGSDVRLK 1316

[Close]

BLAST of MELO3C000805 vs. ExPASy TrEMBL
Match: A0A5D3D7U8 (Sister chromatid cohesion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00220 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 982  QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1041

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFMLQE VGKIIEESLSSGSDVRLK
Sbjct: 1042 LIARPEFMLQEGVGKIIEESLSSGSDVRLK 1071

[Close]

BLAST of MELO3C000805 vs. ExPASy TrEMBL
Match: A0A1S3BSV1 (Sister chromatid cohesion protein OS=Cucumis melo OX=3656 GN=LOC103492901 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 84/90 (93.33%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR     ALGFV
Sbjct: 1222 QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIRVRALQALGFV 1281

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPEFMLQE VGKIIEESLSSGSDVRLK
Sbjct: 1282 LIARPEFMLQEGVGKIIEESLSSGSDVRLK 1311

[Close]

BLAST of MELO3C000805 vs. TAIR 10
Match: AT5G15540.1 (PHD finger family protein )

HSP 1 Score: 97.1 bits (240), Expect = 7.7e-21
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            Q+ GRSLFCLGLLIR+G+ L+S S  KN +++  L+L K +L+TED+ ++     ALGF+
Sbjct: 1249 QIAGRSLFCLGLLIRHGNSLISTSGGKNFNLSGCLNLFKRHLRTEDIALKVRSLQALGFI 1308

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPE+ML+ED+GKIIE +L+  ++ R+K
Sbjct: 1309 LIARPEYMLEEDIGKIIETTLADEANGRMK 1338

[Close]

BLAST of MELO3C000805 vs. TAIR 10
Match: AT5G15540.2 (PHD finger family protein )

HSP 1 Score: 97.1 bits (240), Expect = 7.7e-21
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 4    QLVGRSLFCLGLLIRYGSPLLSNSSNKNVDITKSLSLLKMYLQTEDLVIR-----ALGFV 63
            Q+ GRSLFCLGLLIR+G+ L+S S  KN +++  L+L K +L+TED+ ++     ALGF+
Sbjct: 1247 QIAGRSLFCLGLLIRHGNSLISTSGGKNFNLSGCLNLFKRHLRTEDIALKVRSLQALGFI 1306

Query: 64   LIARPEFMLQEDVGKIIEESLSSGSDVRLK 89
            LIARPE+ML+ED+GKIIE +L+  ++ R+K
Sbjct: 1307 LIARPEYMLEEDIGKIIETTLADEANGRMK 1336

The following BLAST results are available for this feature:

BLAST of MELO3C000805 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058102.1	2.3e-35	100.00	nipped-B-like protein isoform X1 [Cucumis melo var. makuwa]	[more]
XP_031740792.1	9.8e-34	92.22	sister chromatid cohesion protein SCC2 isoform X4 [Cucumis sativus] >KGN53644.2 ...	[more]
XP_031740791.1	9.8e-34	92.22	sister chromatid cohesion protein SCC2 isoform X3 [Cucumis sativus]	[more]
XP_031740790.1	9.8e-34	92.22	sister chromatid cohesion protein SCC2 isoform X2 [Cucumis sativus]	[more]
XP_011653342.1	9.8e-34	92.22	sister chromatid cohesion protein SCC2 isoform X1 [Cucumis sativus]	[more]

BLAST of MELO3C000805 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5HEI1	1.1e-19	53.33	Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 P...	[more]

BLAST of MELO3C000805 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQF8	1.1e-35	100.00	Nipped-B-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0KXR1	4.7e-34	92.22	Sister chromatid cohesion protein OS=Cucumis sativus OX=3659 GN=Csa_4G092980 PE=...	[more]
A0A5A7UVQ1	1.1e-33	93.33	Sister chromatid cohesion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D7U8	1.1e-33	93.33	Sister chromatid cohesion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BSV1	1.1e-33	93.33	Sister chromatid cohesion protein OS=Cucumis melo OX=3656 GN=LOC103492901 PE=3 S...	[more]

BLAST of MELO3C000805 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15540.1	7.7e-21	53.33	PHD finger family protein	[more]
AT5G15540.2	7.7e-21	53.33	PHD finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21704:SF18	EXPRESSED PROTEIN-RELATED	coord: 4..88
IPR033031	Scc2/Nipped-B family	PANTHER	PTHR21704	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	coord: 4..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000805.1	MELO3C000805.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061780	mitotic cohesin loading
biological_process	GO:0010468	regulation of gene expression
molecular_function	GO:0003682	chromatin binding