MELO3C000742 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000742
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pectin lyase-like superfamily protein
Location	chr11: 1606230 .. 1606748 (-)
RNA-Seq Expression	MELO3C000742
Synteny	MELO3C000742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGAAGCTTAATTTCGTCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACATTTGACCATGTGACAATTACTGCGCCGGGGAATAGTCCCAACACTGATGGAATTCACGTGAGTAGTTCAGAACAGATTAATATTCTCAATACCAATATCGCAACCGGAGATGATTGTATATCTGTGGGGGATACCAACAAACAAGTAGTTATTAGTGATGTTACTTGCGGACCAGGACATGGAATTAGCATAGGAAGTTTGGGAAAATATAGCAAGGAAAAAGAAGTGGTAGGAGTGACGGTGAAAAAATGCAAATTGACCGATACTACAAACGGTGTTAGGATCAAAACATGGCCAGATTCTGCCGTCGCATTCCCAGCCTCTGACATGCATTTTGAAGATATCGAAATGGTTAATGTCAGCAATCCTGTCATTATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAG

mRNA sequence

AATTTGAAGCTTAATTTCGTCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACATTTGACCATGTGACAATTACTGCGCCGGGGAATAGTCCCAACACTGATGGAATTCACGTGAGTAGTTCAGAACAGATTAATATTCTCAATACCAATATCGCAACCGGAGATGATTGTATATCTGTGGGGGATACCAACAAACAAGTAGTTATTAGTGATGTTACTTGCGGACCAGGACATGGAATTAGCATAGGAAGTTTGGGAAAATATAGCAAGGAAAAAGAAGTGGTAGGAGTGACGGTGAAAAAATGCAAATTGACCGATACTACAAACGGTGTTAGGATCAAAACATGGCCAGATTCTGCCGTCGCATTCCCAGCCTCTGACATGCATTTTGAAGATATCGAAATGGTTAATGTCAGCAATCCTGTCATTATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAG

Coding sequence (CDS)

AATTTGAAGCTTAATTTCGTCACGAATTCAATAGTGAAGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACATTTGACCATGTGACAATTACTGCGCCGGGGAATAGTCCCAACACTGATGGAATTCACGTGAGTAGTTCAGAACAGATTAATATTCTCAATACCAATATCGCAACCGGAGATGATTGTATATCTGTGGGGGATACCAACAAACAAGTAGTTATTAGTGATGTTACTTGCGGACCAGGACATGGAATTAGCATAGGAAGTTTGGGAAAATATAGCAAGGAAAAAGAAGTGGTAGGAGTGACGGTGAAAAAATGCAAATTGACCGATACTACAAACGGTGTTAGGATCAAAACATGGCCAGATTCTGCCGTCGCATTCCCAGCCTCTGACATGCATTTTGAAGATATCGAAATGGTTAATGTCAGCAATCCTGTCATTATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAG

Protein sequence

NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK

Homology

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BLAST of MELO3C000742 vs. NCBI nr
Match: KAA0045594.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 101 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 160

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 161 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 220

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 221 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 273

[Close]

BLAST of MELO3C000742 vs. NCBI nr
Match: KAA0045610.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. NCBI nr
Match: KAA0045593.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. NCBI nr
Match: XP_008466933.1 (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 357.5 bits (916), Expect = 6.7e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 41  NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 100

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 101 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 160

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 161 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 213

[Close]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-65
Identity = 111/173 (64.16%), Postives = 135/173 (78.03%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           N   NFV NSIV+ +TS DSKN+H+ + GCKN+TFD  TITAPG+SPNTDGIH+  S  +
Sbjct: 149 NFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDV 208

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            ILNTNI TGDDC+S+GD +KQ+ +  V CGPGHG+S+GSLGK++ E+ V G+TVK C L
Sbjct: 209 KILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTL 268

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           T T NGVRIKTWPD+      SD+HFEDI M NV NPVIIDQEY PWNQC++K
Sbjct: 269 TATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKK 321

[Close]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-59
Identity = 101/172 (58.72%), Postives = 133/172 (77.33%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           +++ +FV N+ +KD+TSLD+KN+H N++  KN+TFD++ I AP  SPNTDGIH+   E +
Sbjct: 140 SVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGV 199

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            ILNT IATGDDCISVGD  K ++I  V CGPGHGIS+GSLG+Y  E++V  +TVK C L
Sbjct: 200 KILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTL 259

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNR 173
             T+NG+RIKTWP +A    A+ +HFEDI +  VSNP++IDQEYCPWNQCN+
Sbjct: 260 EGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNK 311

[Close]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-57
Identity = 106/172 (61.63%), Postives = 132/172 (76.74%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NL  N +TNS +KDIT+LDSK++H+N+  CKNLTF    ++AP NSPNTDGIHVS S  +
Sbjct: 143 NLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSV 202

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NI ++N +TGDDCISVGD  +Q+ I+ VTCGPGHGIS+GSLG    EK VVGV V+ C  
Sbjct: 203 NITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTF 262

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNR 173
           T+T NGVRIKTWP S      +D+HFEDI + NVSNPV+IDQ YCP+N+CN+
Sbjct: 263 TNTDNGVRIKTWPASHPGV-VNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNK 313

[Close]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-57
Identity = 103/173 (59.54%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NL+ +F+ +++V+DITSL+SK +HIN+L C+++TF HVT+TAPG S NTDGIHV  S+ +
Sbjct: 130 NLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGV 189

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            I NT IATGDDCIS+G  ++ V I+ V CGPGHGISIGSLG+Y+ EKEV G+TVK C  
Sbjct: 190 TITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTF 249

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           + T NGVR+KTWP+S     A+D+ F+D+ M NV NPVI+DQEYCP+ QC+R+
Sbjct: 250 SGTMNGVRVKTWPNSPPG-AATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQ 301

[Close]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-57
Identity = 101/170 (59.41%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NL+L  VTNSI++D+T+LDSKN+H+N++GCKNLTF+   I+A   S NTDGIH+  S+ +
Sbjct: 109 NLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGV 168

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NI+NT I TGDDCIS+GD +K + I+++TCGPGHGIS+GSLG+Y  E+ VVG+ VK C +
Sbjct: 169 NIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTI 228

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQC 171
           T + NGVRIKTWP S     AS+MHF+DI M +V  P++IDQ YCP+NQC
Sbjct: 229 TGSQNGVRIKTWPKSEPG-EASEMHFQDITMNSVGTPILIDQGYCPYNQC 277

[Close]

BLAST of MELO3C000742 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. ExPASy TrEMBL
Match: A0A5D3DYI3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00050 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. ExPASy TrEMBL
Match: A0A5D3BWP4 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00550 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. ExPASy TrEMBL
Match: A0A5A7TR51 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00990 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 146 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 205

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 206 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 265

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 266 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 318

[Close]

BLAST of MELO3C000742 vs. ExPASy TrEMBL
Match: A0A1S4E643 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.2e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI
Sbjct: 101 NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 160

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL
Sbjct: 161 NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 220

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
           TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK
Sbjct: 221 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 273

[Close]

BLAST of MELO3C000742 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-61
Identity = 103/173 (59.54%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           +++ +FV N+ ++DI+S+D+KN+HIN+LG KN+TFD+V + AP  SPNTDGIH+  SE +
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            ILN+ IATGDDCISVGD  K + + +V CGPGHGIS+GSLG+Y  E++V G+TV  C L
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTL 260

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
             T NG+RIKTWP +A A  AS +HFE+I + NVSNP++IDQEYCPWNQCN++
Sbjct: 261 QGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQ 313

[Close]

BLAST of MELO3C000742 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-60
Identity = 101/173 (58.38%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           +++ +FVT++ ++ ITSLD+K++HIN++G KN+TF+ V I AP  SPNTDGIHV  S+ I
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            I+N+ I+TGDDC+SVGD  K +++  VTCGPGHGISIGSLG+YS E+ V G+ +  C L
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTL 259

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
            +T NG+RIKTWP +A    ASD+HFE+I + NVSNP++IDQEYCPWNQCN++
Sbjct: 260 QETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQ 312

[Close]

BLAST of MELO3C000742 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-60
Identity = 99/173 (57.23%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           +++ +F+ NS ++DI+S+D+KN+HIN+LG KN+T +++ I AP +SPNTDGIH+  S+ +
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
            ILN+ I+TGDDCISVGD  K + +  VTCGPGHGIS+GSLG+Y  E++V G+ V  C L
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTL 259

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
            +T NG+RIKTWP +A +  ASD+HFEDI + +VSNP++IDQEYCPWNQCN++
Sbjct: 260 QETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQ 312

[Close]

BLAST of MELO3C000742 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 228.0 bits (580), Expect = 5.7e-60
Identity = 97/173 (56.07%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           +++ +FVTN+ ++DI+S+D+KN+HIN++G KN+TFD+V I AP  SPNTDGIH+  S  +
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           +I+N+ I+TGDDC+SVGD    +++ +V CGPGHGIS+GSLG+Y  E++V G+ V  C L
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTL 260

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRK 174
            +T NG+RIKTWP +A +  AS++HFE+I + NVSNP++IDQEYCPWNQCN++
Sbjct: 261 QETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQ 313

[Close]

BLAST of MELO3C000742 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 195.7 bits (496), Expect = 3.1e-50
Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 1   NLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQI 60
           N++   +TNS +  ITS +SK +H+N+L CKN+T   + I AP  S NTDGIH+  S  +
Sbjct: 191 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGV 250

Query: 61  NILNTNIATGDDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVVGVTVKKCKL 120
           N++   I TGDDC+S+GD  + +++ +V CGPGHGISIGSLG+Y  E+ V GVTV+KC +
Sbjct: 251 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLI 310

Query: 121 TDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQC 171
            +T NGVRIKTWP S     AS++ FEDI M NVS PV+IDQEYCP+  C
Sbjct: 311 KNTDNGVRIKTWPGSPPGI-ASNILFEDITMDNVSLPVLIDQEYCPYGHC 359

The following BLAST results are available for this feature:

BLAST of MELO3C000742 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045594.1	6.7e-95	100.00	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]
XP_016903689.1	6.7e-95	100.00	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
KAA0045610.1	6.7e-95	100.00	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02646.1 exopolygalactur...	[more]
KAA0045593.1	6.7e-95	100.00	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalactur...	[more]
XP_008466933.1	6.7e-95	100.00	PREDICTED: polygalacturonase-like, partial [Cucumis melo]	[more]

BLAST of MELO3C000742 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	2.0e-65	64.16	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P35337	4.7e-59	58.72	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q05967	1.2e-57	61.63	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
Q6H9K0	1.5e-57	59.54	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P24548	2.0e-57	59.41	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]

BLAST of MELO3C000742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRZ0	3.2e-95	100.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DYI3	3.2e-95	100.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3BWP4	3.2e-95	100.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TR51	3.2e-95	100.00	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S4E643	3.2e-95	100.00	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1	[more]

BLAST of MELO3C000742 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07840.1	1.4e-61	59.54	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	3.3e-60	58.38	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	4.4e-60	57.23	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	5.7e-60	56.07	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	3.1e-50	53.53	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 80..100 e-value: 7100.0 score: 1.1 coord: 57..78 e-value: 2500.0 score: 4.4 coord: 110..131 e-value: 14.0 score: 14.6 coord: 30..56 e-value: 3.5 score: 16.6
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..172 e-value: 3.0E-63 score: 213.9
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 87..100
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..173 e-value: 6.9E-60 score: 204.7
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..171
None	No IPR available	PANTHER	PTHR31375:SF132	OS06G0509600 PROTEIN	coord: 1..171
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000742.1	MELO3C000742.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity