MELO3C000479 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000479
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Aa_trans domain-containing protein
Location	chr12: 15264968 .. 15265338 (-)
RNA-Seq Expression	MELO3C000479
Synteny	MELO3C000479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGACCGAGAGTGGCGGTGATAGTATTATCATGGATAATAACGTTGTACACACTATGACAAATGGTGGAGATGCACGAGGAGGTACCAGGGAAGAGGTTCGACAGGTACCACGAGTTAGGGCAGCACGCTTTCGGGGAGAAGATGAGTCTATGGGTGGTGGTGCCACAACAGCTAATGGTGGAAATTGGTGTGAACATTGGTGTACATGATTACTGGAGGCAACTCTTTGAAGAAGATCCATGACTTGGCTTGCCATGACTGCAAGCCCATCAAGATCACTTACTTCATCATGATCTTTGCTTCTGTTCACTTCTTTCTTTCCCATCTCCCTAGCTTCAACTCCATCACTCTTGTCTCTCTTGCTGCTGCT

mRNA sequence

GGGACCGAGAGTGGCGGTGATAGTATTATCATGGATAATAACGTTGTACACACTATGACAAATGGTGGAGATGCACGAGGAGGTACCAGGGAAGAGGTTCGACAGGTACCACGAGTTAGGGCAGCACGCTTTCGGGGAGAAGATGAGTCTATGGGCAACTCTTTGAAGAAGATCCATGACTTGGCTTGCCATGACTGCAAGCCCATCAAGATCACTTACTTCATCATGATCTTTGCTTCTGTTCACTTCTTTCTTTCCCATCTCCCTAGCTTCAACTCCATCACTCTTGTCTCTCTTGCTGCTGCT

Coding sequence (CDS)

ATGGATAATAACGTTGTACACACTATGACAAATGGTGGAGATGCACGAGGAGGTACCAGGGAAGAGGTTCGACAGGTACCACGAGTTAGGGCAGCACGCTTTCGGGGAGAAGATGAGTCTATGGGCAACTCTTTGAAGAAGATCCATGACTTGGCTTGCCATGACTGCAAGCCCATCAAGATCACTTACTTCATCATGATCTTTGCTTCTGTTCACTTCTTTCTTTCCCATCTCCCTAGCTTCAACTCCATCACTCTTGTCTCTCTTGCTGCTGCT

Protein sequence

MDNNVVHTMTNGGDARGGTREEVRQVPRVRAARFRGEDESMGNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA

Homology

[Close]

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot
Match: Q9FKS8 (Lysine histidine transporter 1 OS=Arabidopsis thaliana OX=3702 GN=LHT1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK H+L C DCKPIK+TYFIMIFASVHF LSHLP+FNSI+ VSLAAA
Sbjct: 139 GKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAA 189

[Close]

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot
Match: Q9SR44 (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana OX=3702 GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKKIHDL C DCK I+ TY+IMIFAS+HF L+HLP+FNSI++VSLAAA
Sbjct: 134 GKSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAA 184

[Close]

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot
Match: Q9LRB5 (Lysine histidine transporter 2 OS=Arabidopsis thaliana OX=3702 GN=LHT2 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK+H L C DCK I+ T++IMIFASVHF +SHLP+FNSI+++SLAAA
Sbjct: 134 GASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAA 184

[Close]

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot
Match: Q9C733 (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana OX=3702 GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK H++AC DC PI++++FIMIFAS HF LSHLP+FNSI+ VSL AA
Sbjct: 146 GQSLKKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAA 196

[Close]

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot
Match: Q9C6M2 (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana OX=3702 GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G  LK+  ++ C  C P++ +Y+I+ F  VHF LS LP+FNS+  VSLAAA
Sbjct: 133 GKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAA 183

[Close]

BLAST of MELO3C000479 vs. NCBI nr
Match: TYK12375.1 (Aa_trans domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.1e-30
Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MDNNVVHTMTNGGDARGGTREEVRQVPRVRAARFRGEDESMGNSLKKIHDLACHDCKPIK 60
           MDNNVVHTMTNGGDARGGTREEVRQ+  V          + GNSLKKIHDLACHDCKPIK
Sbjct: 55  MDNNVVHTMTNGGDARGGTREEVRQL-MVEIGVNIVYMITGGNSLKKIHDLACHDCKPIK 114

Query: 61  ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 115 ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 145

[Close]

BLAST of MELO3C000479 vs. NCBI nr
Match: KAA0056973.1 (lysine histidine transporter-like 8 [Cucumis melo var. makuwa] >TYK26399.1 lysine histidine transporter-like 8 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACHDCKPIK TYFIMIFASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 265 GNSLKKIHDLACHDCKPIKTTYFIMIFASVHFFLSHLPSFNSITLVSLAAA 315

[Close]

BLAST of MELO3C000479 vs. NCBI nr
Match: KAA0040728.1 (Aa_trans domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACHDCKPIK TYFIMIFASVHFFLS+LPSFNSITLVSLAAA
Sbjct: 53  GNSLKKIHDLACHDCKPIKTTYFIMIFASVHFFLSNLPSFNSITLVSLAAA 103

[Close]

BLAST of MELO3C000479 vs. NCBI nr
Match: XP_038905956.1 (lysine histidine transporter 2-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACH CKPIK TYFIMIFASVHFFL HLPSFNSITLVSLAAA
Sbjct: 141 GNSLKKIHDLACHGCKPIKTTYFIMIFASVHFFLPHLPSFNSITLVSLAAA 191

[Close]

BLAST of MELO3C000479 vs. NCBI nr
Match: XP_022137537.1 (lysine histidine transporter 1-like [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACH C+PIK TYFI+IFASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 91  GNSLKKIHDLACHGCRPIKSTYFIIIFASVHFFLSHLPSFNSITLVSLAAA 141

[Close]

BLAST of MELO3C000479 vs. ExPASy TrEMBL
Match: A0A5D3CLE1 (Aa_trans domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001560 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MDNNVVHTMTNGGDARGGTREEVRQVPRVRAARFRGEDESMGNSLKKIHDLACHDCKPIK 60
           MDNNVVHTMTNGGDARGGTREEVRQ+  V          + GNSLKKIHDLACHDCKPIK
Sbjct: 55  MDNNVVHTMTNGGDARGGTREEVRQL-MVEIGVNIVYMITGGNSLKKIHDLACHDCKPIK 114

Query: 61  ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 115 ITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 145

[Close]

BLAST of MELO3C000479 vs. ExPASy TrEMBL
Match: A0A5A7UM34 (Lysine histidine transporter-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00620 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACHDCKPIK TYFIMIFASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 265 GNSLKKIHDLACHDCKPIKTTYFIMIFASVHFFLSHLPSFNSITLVSLAAA 315

[Close]

BLAST of MELO3C000479 vs. ExPASy TrEMBL
Match: A0A5A7TCT2 (Aa_trans domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00540 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLACHDCKPIK TYFIMIFASVHFFLS+LPSFNSITLVSLAAA
Sbjct: 53  GNSLKKIHDLACHDCKPIKTTYFIMIFASVHFFLSNLPSFNSITLVSLAAA 103

[Close]

BLAST of MELO3C000479 vs. ExPASy TrEMBL
Match: A0A6J1JUZ3 (lysine histidine transporter 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489980 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKK+HDLACH C+PIK TYFIM+FASVHFFLSHLPSFNSITLVSLAAA
Sbjct: 91  GNSLKKVHDLACHGCRPIKSTYFIMMFASVHFFLSHLPSFNSITLVSLAAA 141

[Close]

BLAST of MELO3C000479 vs. ExPASy TrEMBL
Match: A0A0A0LUJ1 (Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073670 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           GNSLKKIHDLAC DCKPIK TYFIMIFASVHFFLSHLPSF+SITLVSLAAA
Sbjct: 140 GNSLKKIHDLACPDCKPIKTTYFIMIFASVHFFLSHLPSFDSITLVSLAAA 190

[Close]

BLAST of MELO3C000479 vs. TAIR 10
Match: AT5G40780.1 (lysine histidine transporter 1 )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK H+L C DCKPIK+TYFIMIFASVHF LSHLP+FNSI+ VSLAAA
Sbjct: 139 GKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAA 189

[Close]

BLAST of MELO3C000479 vs. TAIR 10
Match: AT5G40780.2 (lysine histidine transporter 1 )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK H+L C DCKPIK+TYFIMIFASVHF LSHLP+FNSI+ VSLAAA
Sbjct: 138 GKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAA 188

[Close]

BLAST of MELO3C000479 vs. TAIR 10
Match: AT1G67640.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-16
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKKIHDL C DCK I+ TY+IMIFAS+HF L+HLP+FNSI++VSLAAA
Sbjct: 134 GKSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAA 184

[Close]

BLAST of MELO3C000479 vs. TAIR 10
Match: AT1G24400.1 (lysine histidine transporter 2 )

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK+H L C DCK I+ T++IMIFASVHF +SHLP+FNSI+++SLAAA
Sbjct: 134 GASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAA 184

[Close]

BLAST of MELO3C000479 vs. TAIR 10
Match: AT1G48640.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 42  GNSLKKIHDLACHDCKPIKITYFIMIFASVHFFLSHLPSFNSITLVSLAAA 93
           G SLKK H++AC DC PI++++FIMIFAS HF LSHLP+FNSI+ VSL AA
Sbjct: 146 GQSLKKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAA 196

The following BLAST results are available for this feature:

BLAST of MELO3C000479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKS8	4.5e-16	80.39	Lysine histidine transporter 1 OS=Arabidopsis thaliana OX=3702 GN=LHT1 PE=1 SV=1	[more]
Q9SR44	1.1e-14	74.51	Lysine histidine transporter-like 2 OS=Arabidopsis thaliana OX=3702 GN=At1g67640...	[more]
Q9LRB5	1.6e-13	68.63	Lysine histidine transporter 2 OS=Arabidopsis thaliana OX=3702 GN=LHT2 PE=1 SV=1	[more]
Q9C733	2.1e-13	68.63	Lysine histidine transporter-like 1 OS=Arabidopsis thaliana OX=3702 GN=At1g48640...	[more]
Q9C6M2	1.1e-06	49.02	Lysine histidine transporter-like 6 OS=Arabidopsis thaliana OX=3702 GN=At1g25530...	[more]

BLAST of MELO3C000479 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12375.1	3.1e-30	83.70	Aa_trans domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0056973.1	1.6e-18	98.04	lysine histidine transporter-like 8 [Cucumis melo var. makuwa] >TYK26399.1 lysin...	[more]
KAA0040728.1	1.0e-17	96.08	Aa_trans domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038905956.1	3.9e-17	94.12	lysine histidine transporter 2-like [Benincasa hispida]	[more]
XP_022137537.1	8.7e-17	92.16	lysine histidine transporter 1-like [Momordica charantia]	[more]

BLAST of MELO3C000479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLE1	1.5e-30	83.70	Aa_trans domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7UM34	7.7e-19	98.04	Lysine histidine transporter-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TCT2	5.0e-18	96.08	Aa_trans domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A6J1JUZ3	4.2e-17	90.20	lysine histidine transporter 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489980 ...	[more]
A0A0A0LUJ1	4.2e-17	94.12	Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073670 PE...	[more]

BLAST of MELO3C000479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40780.1	3.2e-17	80.39	lysine histidine transporter 1	[more]
AT5G40780.2	3.2e-17	80.39	lysine histidine transporter 1	[more]
AT1G67640.1	7.8e-16	74.51	Transmembrane amino acid transporter family protein	[more]
AT1G24400.1	1.1e-14	68.63	lysine histidine transporter 2	[more]
AT1G48640.1	1.5e-14	68.63	Transmembrane amino acid transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 41..92 e-value: 2.0E-6 score: 26.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48017:SF116	LYSINE HISTIDINE TRANSPORTER-LIKE 1	coord: 42..92
None	No IPR available	PANTHER	PTHR48017	OS05G0424000 PROTEIN-RELATED	coord: 42..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000479.1	MELO3C000479.1	mRNA