MELO3C000398 (gene) Melon (DHL92) v4

Overview
NameMELO3C000398
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDof zinc finger protein DOF5.3-like
Locationchr01: 25918367 .. 25918647 (-)
RNA-Seq ExpressionMELO3C000398
SyntenyMELO3C000398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATACAGCAATGCTACAACAACAGCAGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTCAT

mRNA sequence

CAATACAGCAATGCTACAACAACAGCAGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTCAT

Coding sequence (CDS)

ATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTC

Protein sequence

MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWNNNAFTNTSSWHGLLNSPL
Homology
BLAST of MELO3C000398 vs. NCBI nr
Match: KAA0051913.1 (dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa] >TYK12248.1 dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1   MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 60
           MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW
Sbjct: 213 MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 272

Query: 61  NNNAFTNTSSWHGLLNSPL 80
           NNNAFTNTSSWHGLLNSPL
Sbjct: 273 NNNAFTNTSSWHGLLNSPL 291

BLAST of MELO3C000398 vs. NCBI nr
Match: XP_004147273.1 (dof zinc finger protein DOF2.1 [Cucumis sativus] >KGN64763.1 hypothetical protein Csa_014088 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.8e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1   MKQELFGGREI-NGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARES 60
           MKQELFGGRE+ NG DQSKILWGYPNWQMNNNNNNVIDSNTTTTTMM AMDFDSGSARES
Sbjct: 232 MKQELFGGREMNNGSDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMGAMDFDSGSARES 291

Query: 61  WNNNAFTNTSSWHGLLNSPL 80
           WN+NAFTN SSWHGLLNSPL
Sbjct: 292 WNSNAFTNASSWHGLLNSPL 311

BLAST of MELO3C000398 vs. NCBI nr
Match: XP_038893883.1 (dof zinc finger protein DOF5.3-like [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 72/79 (91.14%), Postives = 72/79 (91.14%), Query Frame = 0

Query: 1   MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 60
           MKQELFGGREINGGDQSKILW YPNWQM NN  N IDSNTTTTTMM AMDFDSGSARESW
Sbjct: 229 MKQELFGGREINGGDQSKILWAYPNWQM-NNYTNAIDSNTTTTTMMTAMDFDSGSARESW 288

Query: 61  NNNAFTNTSSWHGLLNSPL 80
           NNNAFTN SSWHGLLNSPL
Sbjct: 289 NNNAFTNASSWHGLLNSPL 306

BLAST of MELO3C000398 vs. NCBI nr
Match: XP_022970445.1 (dof zinc finger protein DOF2.1-like [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-14
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   KQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWN 61
           KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN      M  MDFDSG+ RESWN
Sbjct: 203 KQEVLGG----GGEESRMLWGYPNWQMNNNST---DSN------MMGMDFDSGAVRESWN 262

Query: 62  NNAFTNTSSWHGLLNSPL 80
           N    N SSWHGLLN+PL
Sbjct: 263 N----NVSSWHGLLNTPL 263

BLAST of MELO3C000398 vs. NCBI nr
Match: XP_022964815.1 (dof zinc finger protein DOF2.1-like [Cucurbita moschata] >KAG7019260.1 Dof zinc finger protein DOF2.1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 7.7e-14
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 2   KQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWN 61
           KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN      M  MDFDSG  RESWN
Sbjct: 206 KQEVLGGG--GGGEESRMLWGYPNWQMNNNST---DSN------MMGMDFDSGGVRESWN 265

Query: 62  NNAFTNTSSWHGLLNSPL 80
           N    N SSWHGLLN+PL
Sbjct: 266 N----NVSSWHGLLNTPL 268

BLAST of MELO3C000398 vs. ExPASy TrEMBL
Match: A0A5D3CM87 (Dof zinc finger protein DOF5.3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00570 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.7e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1   MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 60
           MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW
Sbjct: 213 MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 272

Query: 61  NNNAFTNTSSWHGLLNSPL 80
           NNNAFTNTSSWHGLLNSPL
Sbjct: 273 NNNAFTNTSSWHGLLNSPL 291

BLAST of MELO3C000398 vs. ExPASy TrEMBL
Match: A0A0A0LSJ8 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.2e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1   MKQELFGGREI-NGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARES 60
           MKQELFGGRE+ NG DQSKILWGYPNWQMNNNNNNVIDSNTTTTTMM AMDFDSGSARES
Sbjct: 232 MKQELFGGREMNNGSDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMGAMDFDSGSARES 291

Query: 61  WNNNAFTNTSSWHGLLNSPL 80
           WN+NAFTN SSWHGLLNSPL
Sbjct: 292 WNSNAFTNASSWHGLLNSPL 311

BLAST of MELO3C000398 vs. ExPASy TrEMBL
Match: A0A6J1I2W0 (dof zinc finger protein DOF2.1-like OS=Cucurbita maxima OX=3661 GN=LOC111469422 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2   KQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWN 61
           KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN      M  MDFDSG+ RESWN
Sbjct: 203 KQEVLGG----GGEESRMLWGYPNWQMNNNST---DSN------MMGMDFDSGAVRESWN 262

Query: 62  NNAFTNTSSWHGLLNSPL 80
           N    N SSWHGLLN+PL
Sbjct: 263 N----NVSSWHGLLNTPL 263

BLAST of MELO3C000398 vs. ExPASy TrEMBL
Match: A0A6J1HLW7 (dof zinc finger protein DOF2.1-like OS=Cucurbita moschata OX=3662 GN=LOC111464805 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-14
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 2   KQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWN 61
           KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN      M  MDFDSG  RESWN
Sbjct: 206 KQEVLGGG--GGGEESRMLWGYPNWQMNNNST---DSN------MMGMDFDSGGVRESWN 265

Query: 62  NNAFTNTSSWHGLLNSPL 80
           N    N SSWHGLLN+PL
Sbjct: 266 N----NVSSWHGLLNTPL 268

BLAST of MELO3C000398 vs. ExPASy TrEMBL
Match: A0A7J7DE64 (Putative zinc finger protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00252 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 1   MKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESW 60
           MKQEL  GRE    D S++LWG+P WQ+N  NNN I+            D DSG  RESW
Sbjct: 232 MKQELCNGRE---SDSSRVLWGFP-WQLNEANNNNING-----------DLDSG--RESW 290

Query: 61  NNNAFTNTSSWHGLLNSPL 80
           N      TS+WHGL+NSPL
Sbjct: 292 NG---LGTSTWHGLINSPL 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0051913.17.7e-38100.00dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa] >TYK12248.1 dof z... [more]
XP_004147273.18.8e-3492.50dof zinc finger protein DOF2.1 [Cucumis sativus] >KGN64763.1 hypothetical protei... [more]
XP_038893883.14.8e-3291.14dof zinc finger protein DOF5.3-like [Benincasa hispida][more]
XP_022970445.15.9e-1460.26dof zinc finger protein DOF2.1-like [Cucurbita maxima][more]
XP_022964815.17.7e-1460.26dof zinc finger protein DOF2.1-like [Cucurbita moschata] >KAG7019260.1 Dof zinc ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CM873.7e-38100.00Dof zinc finger protein DOF5.3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0LSJ84.2e-3492.50Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE... [more]
A0A6J1I2W02.9e-1460.26dof zinc finger protein DOF2.1-like OS=Cucurbita maxima OX=3661 GN=LOC111469422 ... [more]
A0A6J1HLW73.7e-1460.26dof zinc finger protein DOF2.1-like OS=Cucurbita moschata OX=3662 GN=LOC11146480... [more]
A0A7J7DE642.0e-0750.63Putative zinc finger protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G0... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C000398.1MELO3C000398.1mRNA