MELO3C000339.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C000339.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr10: 7096798 .. 7097305 (+)
RNA-Seq ExpressionMELO3C000339.jh1
SyntenyMELO3C000339.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTACTGCCGTTTCCAAACATGGTGCATCTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGAAATATGTTGAAGAATATGTTGATGTTGACTCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACGAATACACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGCTGTGAATATGAAGTTCTATCCAATACATTCATTGATTTAAACATGAATGCAGTAGATGACATTCAAGAACACGATCCAATTATAGTTCCGATGGTGACCGATAACACCAAATTGTACATGGGAATGATTTGTGAAAATCAAGAAATGCTGCAACATATGGTTAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTTGAGTCTACACCGACAAAGTGGGTCATCCGATGAAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

mRNA sequence

ATTGTACTGCCGTTTCCAAACATGGTGCATCTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGAAATATGTTGAAGAATATGTTGATGTTGACTCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACGAATACACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGCTGTGAATATGAAGTTCTATCCAATACATTCATTGATTTAAACATGAATGCAGTAGATGACATTCAAGAACACGATCCAATTATAGTTCCGATGGTGACCGATAACACCAAATTGTACATGGGAATGATTTGTGAAAATCAAGAAATGCTGCAACATATGGTTAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTTGAGTCTACACCGACAAAGTGGGTCATCCGATGAAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

Coding sequence (CDS)

ATGGTGCATCTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGAAATATGTTGAAGAATATGTTGATGTTGACTCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACGAATACACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGCTGTGAATATGAAGTTCTATCCAATACATTCATTGATTTAAACATGAATGCAGTAGATGACATTCAAGAACACGATCCAATTATAGTTCCGATGGTGACCGATAACACCAAATTGTACATGGGAATGATTTGTGAAAATCAAGAAATGCTGCAACATATGGTTAAGTGTTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTTGAGTCTACACCGACAAAGTGGGTCATCCGATGA

Protein sequence

MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQHMVKCFAIKSHAPYEVVESTPTKWVIR
Homology
BLAST of MELO3C000339.jh1 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (703), Expect = 1.70e-90
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVD AINLNVEP+YVEEYVDV+ ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 56  MVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDD 115

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVD IQEHDPIIVPMVTDNTKLY GMICEN+EM+Q
Sbjct: 116 EFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQ 175

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVESTPTKWVIR
Sbjct: 176 HMVKCFAIKSHAPYEVVESTPTKWVIR 202

BLAST of MELO3C000339.jh1 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 4.49e-89
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDLAINLNVEPKYVEEYVDVD ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 14  MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVATNEYTEFRTETDD 73

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVDDIQE DPIIVPMVTDNTKLY  MICEN+EMLQ
Sbjct: 74  EFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKLYTRMICENKEMLQ 133

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVEST TKWVI+
Sbjct: 134 HMVKCFAIKSHAPYEVVESTLTKWVIQ 160

BLAST of MELO3C000339.jh1 vs. NCBI nr
Match: KAA0050313.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK03530.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (693), Expect = 2.40e-87
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDL INLNVEPKYV    DVD ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 11  MVHLYVTVSMVDLTINLNVEPKYV----DVDPESDAPPVCHEEEMVATNEYTEFRTETDD 70

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEVLSNTF DL+MNAVDDIQEHDPIIVPMVTDNTKLY GMICEN+EMLQ
Sbjct: 71  EFEEMDFDGCEYEVLSNTFTDLDMNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMLQ 130

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEV+ESTPTKWVIR
Sbjct: 131 HMVKCFAIKSHAPYEVIESTPTKWVIR 153

BLAST of MELO3C000339.jh1 vs. NCBI nr
Match: KAA0055864.1 (uncharacterized protein E6C27_scaffold104G00420 [Cucumis melo var. makuwa] >TYK24088.1 uncharacterized protein E5676_scaffold943G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 261 bits (667), Expect = 4.79e-87
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDLAINLNVEP YVEEYVDVD ESDAPPVCHEEEMVATN+YTEFRTET+D
Sbjct: 14  MVHLYVTVSMVDLAINLNVEPTYVEEYVDVDPESDAPPVCHEEEMVATNKYTEFRTETND 73

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           E EEMD DGCEYEV SNTF DL+MNAVD IQEHDPIIV MV DNTKLY GMICEN+EMLQ
Sbjct: 74  ELEEMDLDGCEYEVPSNTFTDLDMNAVDGIQEHDPIIVLMVIDNTKLYTGMICENKEMLQ 133

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHA YEVVESTPTKWVIR
Sbjct: 134 HMVKCFAIKSHASYEVVESTPTKWVIR 160

BLAST of MELO3C000339.jh1 vs. NCBI nr
Match: KAA0050312.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK03529.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 6.22e-87
Identity = 130/147 (88.44%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSM+DL INLNVEPKYV    DVD ESDAPPVCHEEEMVATNEY EFRTETDD
Sbjct: 1   MVHLYVTVSMIDLVINLNVEPKYV----DVDPESDAPPVCHEEEMVATNEYIEFRTETDD 60

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVDDIQEHDPIIVPMVTDNT+LY GMIC+N+++LQ
Sbjct: 61  EFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNTELYTGMICDNKKILQ 120

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVESTPTKWVIR
Sbjct: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 143

BLAST of MELO3C000339.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 8.22e-91
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVD AINLNVEP+YVEEYVDV+ ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 56  MVHLYVTVSMVDTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDD 115

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVD IQEHDPIIVPMVTDNTKLY GMICEN+EM+Q
Sbjct: 116 EFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQ 175

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVESTPTKWVIR
Sbjct: 176 HMVKCFAIKSHAPYEVVESTPTKWVIR 202

BLAST of MELO3C000339.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 2.17e-89
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDLAINLNVEPKYVEEYVDVD ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 14  MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDQESDAPPVCHEEEMVATNEYTEFRTETDD 73

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVDDIQE DPIIVPMVTDNTKLY  MICEN+EMLQ
Sbjct: 74  EFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMVTDNTKLYTRMICENKEMLQ 133

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVEST TKWVI+
Sbjct: 134 HMVKCFAIKSHAPYEVVESTLTKWVIQ 160

BLAST of MELO3C000339.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U326 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00200 PE=4 SV=1)

HSP 1 Score: 271 bits (693), Expect = 1.16e-87
Identity = 136/147 (92.52%), Postives = 139/147 (94.56%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDL INLNVEPKYV    DVD ESDAPPVCHEEEMVATNEYTEFRTETDD
Sbjct: 11  MVHLYVTVSMVDLTINLNVEPKYV----DVDPESDAPPVCHEEEMVATNEYTEFRTETDD 70

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEVLSNTF DL+MNAVDDIQEHDPIIVPMVTDNTKLY GMICEN+EMLQ
Sbjct: 71  EFEEMDFDGCEYEVLSNTFTDLDMNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMLQ 130

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEV+ESTPTKWVIR
Sbjct: 131 HMVKCFAIKSHAPYEVIESTPTKWVIR 153

BLAST of MELO3C000339.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DKL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00600 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 2.32e-87
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSMVDLAINLNVEP YVEEYVDVD ESDAPPVCHEEEMVATN+YTEFRTET+D
Sbjct: 14  MVHLYVTVSMVDLAINLNVEPTYVEEYVDVDPESDAPPVCHEEEMVATNKYTEFRTETND 73

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           E EEMD DGCEYEV SNTF DL+MNAVD IQEHDPIIV MV DNTKLY GMICEN+EMLQ
Sbjct: 74  ELEEMDLDGCEYEVPSNTFTDLDMNAVDGIQEHDPIIVLMVIDNTKLYTGMICENKEMLQ 133

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHA YEVVESTPTKWVIR
Sbjct: 134 HMVKCFAIKSHASYEVVESTPTKWVIR 160

BLAST of MELO3C000339.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BZN0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00190 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 3.01e-87
Identity = 130/147 (88.44%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MVHLYVTVSMVDLAINLNVEPKYVEEYVDVDSESDAPPVCHEEEMVATNEYTEFRTETDD 60
           MVHLYVTVSM+DL INLNVEPKYV    DVD ESDAPPVCHEEEMVATNEY EFRTETDD
Sbjct: 1   MVHLYVTVSMIDLVINLNVEPKYV----DVDPESDAPPVCHEEEMVATNEYIEFRTETDD 60

Query: 61  EFEEMDFDGCEYEVLSNTFIDLNMNAVDDIQEHDPIIVPMVTDNTKLYMGMICENQEMLQ 120
           EFEEMDFDGCEYEV SNTF DL+MNAVDDIQEHDPIIVPMVTDNT+LY GMIC+N+++LQ
Sbjct: 61  EFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNTELYTGMICDNKKILQ 120

Query: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 147
           HMVKCFAIKSHAPYEVVESTPTKWVIR
Sbjct: 121 HMVKCFAIKSHAPYEVVESTPTKWVIR 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034014.11.70e-9092.52uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
TYK23115.14.49e-8993.20GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0050313.12.40e-8792.52serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0055864.14.79e-8789.80uncharacterized protein E6C27_scaffold104G00420 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0050312.16.22e-8788.44serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SS318.22e-9192.52DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DHR22.17e-8993.20GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U3261.16e-8792.52Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3DKL92.32e-8789.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZN03.01e-8788.44Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C000339.jh1.t1MELO3C000339.jh1.t1mRNA