MELO3C000339 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000339
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DBD_Tnp_Mut domain-containing protein
Location	chr05: 10522965 .. 10523460 (+)
RNA-Seq Expression	MELO3C000339
Synteny	MELO3C000339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCACTGTCGTTTCCAAACATGGTGCATCTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGAAATATGTTGATGTTGACCTAGAGTCAGATGCACCACTAGTGTGCCATGAAAAAGAAATGGTAGCTACCAACGAATACACAGAGTTTAGAACAGAAACTGATGACGAATTTAAAGAGATCGATTTCAATGGCTGTGAATATTGAGTTCCATCCAATACATTCACTGATTTAGACATGAATGCAGTAGATGACATTCAAGAACACGATCCAATCATAGTTCCGATGGTGACCGACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGATGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACTGACAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAATGTTGCAAATGGAGACTTCGTGCAATAA

mRNA sequence

ATTGCACTGTCGTTTCCAAACATGGTGCATCTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGAAATATGTTGATGTTGACCTAGAGTCAGATGCACCACTAGTGTGCCATGAAAAAGAAATGGTAGCTACCAACGAATACACAGAGTTTAGAACAGAAACTGATGACGAATTTAAAGAGATCGATTTCAATGGCTGTGAATATTGAGTTCCATCCAATACATTCACTGATTTAGACATGAATGCAGTAGATGACATTCAAGAACACGATCCAATCATAGTTCCGATGGTGACCGACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGATGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACTGACAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAATGTTGCAAATGGAGACTTCGTGCAATAA

Coding sequence (CDS)

ATGAATGCAGTAGATGACATTCAAGAACACGATCCAATCATAGTTCCGATGGTGACCGACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGATGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACTGACAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAATGTTGCAAATGGAGACTTCGTGCAATA

Protein sequence

MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTKWVIRCKKSNECCKWRLRAI

Homology

[Close]

BLAST of MELO3C000339 vs. NCBI nr
Match: KAA0039601.1 (uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 4.1e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
          MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK
Sbjct: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60

Query: 61 WVIRCKKSNECCKWRLRAI 80
          WVIRCKKSNECCKWRLRAI
Sbjct: 61 WVIRCKKSNECCKWRLRAI 79

[Close]

BLAST of MELO3C000339 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVD IQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVEST TK
Sbjct: 139 MNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTK 198

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 199 WVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C000339 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 7.2e-36
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVDDIQEHDPIIVPMVTDN KLYTGMICENKEM+QHMVKCFAIKSHAPYEVVEST TK
Sbjct: 40  MNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVKCFAIKSHAPYEVVESTPTK 99

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 100 WVIRCKKSNEGCKWRLRAI 118

[Close]

BLAST of MELO3C000339 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVD IQEHDPIIVPMVTDNTKLYTGMICENKEM+QHM+KCFAIKSHAPYEVVEST TK
Sbjct: 139 MNAVDGIQEHDPIIVPMVTDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTK 198

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 199 WVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C000339 vs. NCBI nr
Match: KAA0047310.1 (uncharacterized protein E6C27_scaffold908G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
          +NA+DDIQEHDPIIVPMVTDNTKLY GMICENKEM+QHMVKCFAIKSHAPYEVVEST TK
Sbjct: 20 INAIDDIQEHDPIIVPMVTDNTKLYKGMICENKEMLQHMVKCFAIKSHAPYEVVESTPTK 79

Query: 61 WVIRCKKSNECCKWRLRAI 80
          WVIRCKKSNE CKWRLRAI
Sbjct: 80 WVIRCKKSNEGCKWRLRAI 98

[Close]

BLAST of MELO3C000339 vs. ExPASy TrEMBL
Match: A0A5A7TD93 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00780 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
          MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK
Sbjct: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60

Query: 61 WVIRCKKSNECCKWRLRAI 80
          WVIRCKKSNECCKWRLRAI
Sbjct: 61 WVIRCKKSNECCKWRLRAI 79

[Close]

BLAST of MELO3C000339 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVD IQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVEST TK
Sbjct: 139 MNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTK 198

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 199 WVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C000339 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-36
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVDDIQEHDPIIVPMVTDN KLYTGMICENKEM+QHMVKCFAIKSHAPYEVVEST TK
Sbjct: 40  MNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVKCFAIKSHAPYEVVESTPTK 99

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 100 WVIRCKKSNEGCKWRLRAI 118

[Close]

BLAST of MELO3C000339 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.9e-36
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
           MNAVD IQEHDPIIVPMVTDNTKLYTGMICENKEM+QHM+KCFAIKSHAPYEVVEST TK
Sbjct: 139 MNAVDGIQEHDPIIVPMVTDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTK 198

Query: 61  WVIRCKKSNECCKWRLRAI 80
           WVIRCKKSNE CKWRLRAI
Sbjct: 199 WVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C000339 vs. ExPASy TrEMBL
Match: A0A5A7TVX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001260 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1  MNAVDDIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTLTK 60
          +NA+DDIQEHDPIIVPMVTDNTKLY GMICENKEM+QHMVKCFAIKSHAPYEVVEST TK
Sbjct: 20 INAIDDIQEHDPIIVPMVTDNTKLYKGMICENKEMLQHMVKCFAIKSHAPYEVVESTPTK 79

Query: 61 WVIRCKKSNECCKWRLRAI 80
          WVIRCKKSNE CKWRLRAI
Sbjct: 80 WVIRCKKSNEGCKWRLRAI 98

The following BLAST results are available for this feature:

BLAST of MELO3C000339 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039601.1	4.1e-39	100.00	uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]	[more]
KAA0034014.1	5.5e-36	96.20	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYK27427.1	7.2e-36	94.94	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0040476.1	1.2e-35	93.67	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0047310.1	2.7e-35	92.41	uncharacterized protein E6C27_scaffold908G001260 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C000339 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C000339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TD93	2.0e-39	100.00	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7SS31	2.7e-36	96.20	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DUI1	3.5e-36	94.94	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DIM2	5.9e-36	93.67	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7TVX8	1.3e-35	92.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C000339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 23..78 e-value: 1.7E-8 score: 34.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000339.1	MELO3C000339.1	mRNA