MELO3C000330 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000330
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase subunit beta''
Location	chr07: 5174594 .. 5175127 (+)
RNA-Seq Expression	MELO3C000330
Synteny	MELO3C000330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAA

mRNA sequence

ATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAA

Coding sequence (CDS)

ATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGTGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAAAAATCGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATCAATTTAGTAAAACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATACTTTATGGAAATGGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCGCGCTTCCTTTGTTGAA

Protein sequence

MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE

Homology

[Close]

BLAST of MELO3C000330 vs. NCBI nr
Match: YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. NCBI nr
Match: QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 682 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 741

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 742 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 801

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 802 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 859

[Close]

BLAST of MELO3C000330 vs. NCBI nr
Match: ASY96752.1 (RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97274.1 RNA polymerase beta'' subunit [Cucumis melo var. flexuosus] >ASY97013.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97187.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. NCBI nr
Match: Q4VZP3.1 (RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' [Cucumis sativus] >AVE15321.1 RpoC2 [Cucumis sativus var. sativus] >AAZ94641.1 RNA polymerase beta II subunit [Cucumis sativus] >ABI97407.1 RNA polymerase beta' subunit [Cucumis sativus] >ABI98735.1 RNA polymerase beta' subunit [Cucumis sativus] >ARQ16068.1 RNA polymerase beta' subunit [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 6.5e-93
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. NCBI nr
Match: YP_009004034.1 (RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'' subunit [Cucumis sativus] >ALF03291.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >AHJ61376.1 RNA polymerase beta' subunit [Cucumis hystrix] >ANF28367.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >ASY97448.1 RNA polymerase beta'' subunit [Cucumis sativus var. hardwickii] >QDH07735.1 RpoC2 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 6.5e-93
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 682 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 741

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 742 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 801

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 802 ERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 859

[Close]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.5e-96
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-78
Identity = 146/178 (82.02%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGV T++ L+ RSRVGGLVRVE+KKK++ELKIFSGDIHFPGE DKISRH+ IL
Sbjct: 684 MVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKMELKIFSGDIHFPGETDKISRHSDIL 743

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPP  VK NSK+SKK KNWIY+Q ITPTKKKYFV VRPVIIYE+A+GINL  LFPQDLLQ
Sbjct: 744 IPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYEIANGINLETLFPQDLLQ 803

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           E+DNL+LRVVNYILYG GKPIRGIS TSIQLVRTCL+LNWD+DKKSSSIE+ARA+FVE
Sbjct: 804 EKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEARAAFVE 861

[Close]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot
Match: Q09X27 (DNA-directed RNA polymerase subunit beta'' OS=Morus indica OX=248361 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.9e-77
Identity = 148/178 (83.15%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGV TR+TL+ RSRVGGLVRVEKK KRIELKIFSGDIHFP EMDKI RH+GIL
Sbjct: 689 MVRNNSIIGVDTRITLNTRSRVGGLVRVEKKNKRIELKIFSGDIHFPVEMDKIFRHSGIL 748

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPP RVKK  K+SKK KNWIYVQ ITPTKKKYFV VRPVIIYE+ADGINL  LFPQD LQ
Sbjct: 749 IPPGRVKKEFKESKKWKNWIYVQSITPTKKKYFVLVRPVIIYEIADGINLETLFPQDPLQ 808

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           E+DNLELRVVNYILYGNGKPI GISGT IQLVRTCL+LNWD+  KSSS E+  ASFVE
Sbjct: 809 EKDNLELRVVNYILYGNGKPILGISGTCIQLVRTCLVLNWDQGNKSSSSEETHASFVE 866

[Close]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot
Match: Q3C1G9 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.9e-77
Identity = 141/178 (79.21%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSI+GV T++TL++RSRVGGLVRVE+KKKRIELKIFSGDIHFPGE DKISRH G+L
Sbjct: 684 MVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKISRHTGVL 743

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPP   K+NSK+SKK KNWIYVQ ITP+KKK+FV VRPV+ YE+ DGINL  LFP D LQ
Sbjct: 744 IPPGTGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINLATLFPPDPLQ 803

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDN++LR+VNYILYGNGKPIRGIS TSIQLVRTCL+LNW++DKKSSS E+ARASFVE
Sbjct: 804 ERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVE 861

[Close]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot
Match: P38550 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 288.9 bits (738), Expect = 3.9e-77
Identity = 141/178 (79.21%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSI+GV T++TL++RSRVGGLVRVE+KKKRIELKIFSGDIHFPGE DKISRH G+L
Sbjct: 684 MVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKISRHTGVL 743

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPP   K+NSK+SKK KNWIYVQ ITP+KKK+FV VRPV+ YE+ DGINL  LFP D LQ
Sbjct: 744 IPPGTGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINLATLFPPDPLQ 803

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDN++LR+VNYILYGNGKPIRGIS TSIQLVRTCL+LNW++DKKSSS E+ARASFVE
Sbjct: 804 ERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVE 861

[Close]

BLAST of MELO3C000330 vs. ExPASy TrEMBL
Match: A0A249RZW9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. ExPASy TrEMBL
Match: A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. ExPASy TrEMBL
Match: A0A286NFX2 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. ExPASy TrEMBL
Match: A0A249RYY9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=2034236 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. ExPASy TrEMBL
Match: A0A249RYA1 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
Sbjct: 686 MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 745

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ
Sbjct: 746 IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 805

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE
Sbjct: 806 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 863

[Close]

BLAST of MELO3C000330 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 271.9 bits (694), Expect = 3.5e-73
Identity = 138/178 (77.53%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL 60
           MV+N SIIGV TRLTL+IRS+VGGL+RVEKKKKRIELKIFSGDIHFP + DKISRH+GIL
Sbjct: 682 MVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTDKISRHSGIL 741

Query: 61  IPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQ 120
           IPP R KKNSK+SKK KNWIYVQ ITPTKKK+FV VRPV  YE+AD INL  LFPQDL +
Sbjct: 742 IPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLATLFPQDLFR 801

Query: 121 ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVE 179
           E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+LNWD   K+SS+E+ RA FVE
Sbjct: 802 EKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWD---KNSSLEEVRAFFVE 856

The following BLAST results are available for this feature:

BLAST of MELO3C000330 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841773.1	2.2e-93	100.00	RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol...	[more]
QJF46373.1	2.2e-93	100.00	RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s...	[more]
ASY96752.1	2.2e-93	100.00	RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA poly...	[more]
Q4VZP3.1	6.5e-93	99.44	RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; Alt...	[more]
YP_009004034.1	6.5e-93	99.44	RNA polymerase beta' subunit [Cucumis hystrix] >YP_247589.2 RNA polymerase beta'...	[more]

BLAST of MELO3C000330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	8.5e-96	99.44	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B1NWE0	2.7e-78	82.02	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]
Q09X27	3.9e-77	83.15	DNA-directed RNA polymerase subunit beta'' OS=Morus indica OX=248361 GN=rpoC2 PE...	[more]
Q3C1G9	3.9e-77	79.21	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rp...	[more]
P38550	3.9e-77	79.21	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2...	[more]

BLAST of MELO3C000330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZW9	1.1e-93	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. cantalupensis OX...	[more]
A0A249RXP5	1.1e-93	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21...	[more]
A0A286NFX2	1.1e-93	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. flexuosus OX=112...	[more]
A0A249RYY9	1.1e-93	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=203423...	[more]
A0A249RYA1	1.1e-93	100.00	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 ...	[more]

BLAST of MELO3C000330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	3.5e-73	77.53	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..178
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000330.1	MELO3C000330.1	mRNA