MELO3C000258 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000258
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Malate dehydrogenase
Location	chr02: 25367647 .. 25367974 (+)
RNA-Seq Expression	MELO3C000258
Synteny	MELO3C000258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAACATCAGCAACTAGTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAGCTCAACTTGTTTTCCCAGTCAAAGTCTACTAGCCTAAGAATCAATTCACAAGAGAAGCTTCAGAGCTTCTGTGGCCTCAAGGCAGATTCATCCCTTCGTTGTGACTCAGAGTCGTCTTTCCTAGGGAAACAGAGCAGCGCTGCCCTATGGCGTCATCTTGCTCCTTCAGTACAAAGAGCGAACCTGAATTTATGCAAAAATCTTCAACCTCAAGCCTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTCTGG

mRNA sequence

ATGGCAGCAACATCAGCAACTAGTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAGCTCAACTTGTTTTCCCAGTCAAAGTCTACTAGCCTAAGAATCAATTCACAAGAGAAGCTTCAGAGCTTCTGTGGCCTCAAGGCAGATTCATCCCTTCGTTGTGACTCAGAGTCGTCTTTCCTAGGGAAACAGAGCAGCGCTGCCCTATGGCGTCATCTTGCTCCTTCAGTACAAAGAGCGAACCTGAATTTATGCAAAAATCTTCAACCTCAAGCCTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTCTGG

Coding sequence (CDS)

ATGGCAGCAACATCAGCAACTAGTTTGTCAATTGGAGCAACTGCATCACTTAATACTAAGCTCAACTTGTTTTCCCAGTCAAAGTCTACTAGCCTAAGAATCAATTCACAAGAGAAGCTTCAGAGCTTCTGTGGCCTCAAGGCAGATTCATCCCTTCGTTGTGACTCAGAGTCGTCTTTCCTAGGGAAACAGAGCAGCGCTGCCCTATGGCGTCATCTTGCTCCTTCAGTACAAAGAGCGAACCTGAATTTATGCAAAAATCTTCAACCTCAAGCCTCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGAATAGGTCAGCCTCTG

Protein sequence

MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSFLGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL

Homology

[Close]

BLAST of MELO3C000258 vs. NCBI nr
Match: KAA0057944.1 (malate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 109

[Close]

BLAST of MELO3C000258 vs. NCBI nr
Match: KAA0046579.1 (malate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF
Sbjct: 82  MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 141

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG 107
           LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG
Sbjct: 142 LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG 187

[Close]

BLAST of MELO3C000258 vs. NCBI nr
Match: XP_011660098.1 (malate dehydrogenase, chloroplastic [Cucumis sativus] >XP_031736557.1 malate dehydrogenase, chloroplastic [Cucumis sativus] >KAE8652418.1 hypothetical protein Csa_013195 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.2e-42
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATS TSLSIGATASLNTKLNLFSQSKS S RINS  KLQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSL-KLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR NLNLCK+LQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSAQRENLNLCKSLQPQASYKVAVLGAAGGIGQPL 108

[Close]

BLAST of MELO3C000258 vs. NCBI nr
Match: XP_038879862.1 (malate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSAT LS+GATASLNTKLN F QSKS SLRINSQE LQSFCGLKA SSLRCDSESSF
Sbjct: 21  MAATSATILSVGATASLNTKLNSFYQSKSASLRINSQETLQSFCGLKAASSLRCDSESSF 80

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR N N+CK+LQPQASYKVAVLGAAGGIGQPL
Sbjct: 81  LGKQSSAALWRHLAPSAQRVNQNVCKSLQPQASYKVAVLGAAGGIGQPL 129

[Close]

BLAST of MELO3C000258 vs. NCBI nr
Match: XP_038879863.1 (malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038879864.1 malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSAT LS+GATASLNTKLN F QSKS SLRINSQE LQSFCGLKA SSLRCDSESSF
Sbjct: 1   MAATSATILSVGATASLNTKLNSFYQSKSASLRINSQETLQSFCGLKAASSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR N N+CK+LQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSAQRVNQNVCKSLQPQASYKVAVLGAAGGIGQPL 109

[Close]

BLAST of MELO3C000258 vs. ExPASy Swiss-Prot
Match: Q9SN86 (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 5   SATSLSIGATASLN-TKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSFLGK 64
           +ATS S+ +T S + +K +    S+  S++ NS   + SF GLK+ +SL   S+SS L K
Sbjct: 3   TATSASLFSTVSSSYSKASSIPHSRLQSVKFNS---VPSFTGLKS-TSLISGSDSSSLAK 62

Query: 65  QSSAALWRHLAPSVQRANLNLCK--NLQPQASYKVAVLGAAGGIGQPL 110
                    L  SV +A  +  K    +  ASYKVAVLGAAGGIGQPL
Sbjct: 63  T--------LRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPL 98

[Close]

BLAST of MELO3C000258 vs. ExPASy TrEMBL
Match: A0A5A7URZ9 (Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002470 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.4e-49
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 109

[Close]

BLAST of MELO3C000258 vs. ExPASy TrEMBL
Match: A0A5A7TZB6 (Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001120 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF
Sbjct: 82  MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 141

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG 107
           LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG
Sbjct: 142 LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIG 187

[Close]

BLAST of MELO3C000258 vs. ExPASy TrEMBL
Match: A0A0A0LSB1 (Malate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_1G009760 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATS TSLSIGATASLNTKLNLFSQSKS S RINS  KLQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSVTSLSIGATASLNTKLNLFSQSKSASPRINSL-KLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR NLNLCK+LQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSAQRENLNLCKSLQPQASYKVAVLGAAGGIGQPL 108

[Close]

BLAST of MELO3C000258 vs. ExPASy TrEMBL
Match: A0A5D3D2Y8 (Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00110 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSAT LSIGAT SLN KL+ FS SKS SLRINS E LQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSATILSIGATESLNCKLSSFSHSKSASLRINSHETLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR NLN+ KNLQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSAQRVNLNVRKNLQPQASYKVAVLGAAGGIGQPL 109

[Close]

BLAST of MELO3C000258 vs. ExPASy TrEMBL
Match: A0A1S3BRW9 (Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103492856 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MAATSATSLSIGATASLNTKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSF 60
           MAATSAT LSIGAT SLN KL+ FS SKS SLRINS E LQSFCGLKADSSLRCDSESSF
Sbjct: 1   MAATSATILSIGATESLNCKLSSFSHSKSASLRINSHETLQSFCGLKADSSLRCDSESSF 60

Query: 61  LGKQSSAALWRHLAPSVQRANLNLCKNLQPQASYKVAVLGAAGGIGQPL 110
           LGKQSSAALWRHLAPS QR NLN+ KNLQPQASYKVAVLGAAGGIGQPL
Sbjct: 61  LGKQSSAALWRHLAPSAQRVNLNVRKNLQPQASYKVAVLGAAGGIGQPL 109

[Close]

BLAST of MELO3C000258 vs. TAIR 10
Match: AT3G47520.1 (malate dehydrogenase )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 5   SATSLSIGATASLN-TKLNLFSQSKSTSLRINSQEKLQSFCGLKADSSLRCDSESSFLGK 64
           +ATS S+ +T S + +K +    S+  S++ NS   + SF GLK+ +SL   S+SS L K
Sbjct: 3   TATSASLFSTVSSSYSKASSIPHSRLQSVKFNS---VPSFTGLKS-TSLISGSDSSSLAK 62

Query: 65  QSSAALWRHLAPSVQRANLNLCK--NLQPQASYKVAVLGAAGGIGQPL 110
                    L  SV +A  +  K    +  ASYKVAVLGAAGGIGQPL
Sbjct: 63  T--------LRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPL 98

The following BLAST results are available for this feature:

BLAST of MELO3C000258 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057944.1	1.7e-48	100.00	malate dehydrogenase [Cucumis melo var. makuwa]	[more]
KAA0046579.1	1.6e-46	100.00	malate dehydrogenase [Cucumis melo var. makuwa]	[more]
XP_011660098.1	3.2e-42	92.66	malate dehydrogenase, chloroplastic [Cucumis sativus] >XP_031736557.1 malate deh...	[more]
XP_038879862.1	1.6e-41	88.99	malate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida]	[more]
XP_038879863.1	1.6e-41	88.99	malate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida] >XP_0388...	[more]

BLAST of MELO3C000258 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN86	4.7e-04	42.59	Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g47520...	[more]

BLAST of MELO3C000258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URZ9	8.4e-49	100.00	Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274...	[more]
A0A5A7TZB6	7.9e-47	100.00	Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114...	[more]
A0A0A0LSB1	1.5e-42	92.66	Malate dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_1G009760 PE=3 SV=1	[more]
A0A5D3D2Y8	1.9e-40	88.07	Malate dehydrogenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BRW9	1.9e-40	88.07	Malate dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103492856 PE=3 SV=1	[more]

BLAST of MELO3C000258 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47520.1	3.3e-05	42.59	malate dehydrogenase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11540:SF60	MALATE DEHYDROGENASE, GLYOXYSOMAL	coord: 22..109
None	No IPR available	PANTHER	PTHR11540	MALATE AND LACTATE DEHYDROGENASE	coord: 22..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000258.1	MELO3C000258.1	mRNA