MELO3C000213 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000213
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Rab escort protein 1
Location	chr01: 17885858 .. 17887003 (-)
RNA-Seq Expression	MELO3C000213
Synteny	MELO3C000213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGGTGGCAATTTAGCTGTTTGCCCAGAGGATATGTGAGTTAATTTCACGTTTGGAAATAATTCATTGTCATCTTCTATTTTCTTGTCCTCTCTTTCTATTAATCTATTCTTACTTCATTTTTATTAATGAGAAGTTATTTTTAATTGATACACTTGTTCTGTCTAAAAAATGACCACCTTGTTTTTTAAGAAATTCTCAAGGGCTTTGCATTGGGACCATCTATATTTTTTGGGAGTGTTTTGTTAAGTTACAGGCTCATGCAGGTGCTGTTTTAATATGTTTCGTCACCAACCTTAGTGGTTAGACACCATAAACTATTTTCTATGAGTGGTAATCTTCAATTTTGAATGCAATGAATGTTAACAGATATTACGTTTTTTAGATCAATAAAAATTTGTTAGCCTTCGACTTCTATATTAAACAAATTTTTTTGTATAGATAAAATTGTTTAACCTACCGAGCCCTCTGCTCTGTGGGCTCTGCGTCCTCAAAGTGGTACTCATGAAAGGTGGTGGTGGTAAATCATGCTCAATGCCGTTGCAATGGGCTAAATGGGTGGGATGCATAACAATTTTAGAATTTGTTTTATATTGCTACAAGATCTCTTTCTGCCCTATCGTTTTAAATCTCCTTGGTCTCGCATATATTTCATGGATAGGGATGTCAGGTTGATTAATCATTGTCATTAGCTTGGACTATGCTCAAGTTTTCTTTCTACTGATTACAGTCTTAGTCTCAACATTTATTTATTATGAGCAGTTTGGTTGATGGGATCATCTTAAATTTTTATGACATATATCTATGTCTATATCTCTCTCTCTCACACACGCACACTTCTTTGAAACAATTTTGTTTTCATCATTTTCATTGTTTCACAAGCTTTAGTATGGTGTCTAAATAATCATTCTGCCAGTTGAAGCTGTTTGACAGTGTCGCTTCTTGTGTAGGTTTGTCATATACATTTCTACCTTATGTGATAATGCTAATCAAGGGAAGGAGATGGTTCGTGAAGCTATGAATGCAATCATGTCGCTCTTTGTTTCTGATTGTCCTGATTCTAGTTCTGTAGATCAAGATACCAATGCAGAAGGTAAAGAATTGGACCTACTTTGGAGTGCACTATACGTTCAGGAATCAAGTGTG

mRNA sequence

ATAGGTGGCAATTTAGCTGTTTGCCCAGAGGATATGTTTGTCATATACATTTCTACCTTATGTGATAATGCTAATCAAGGGAAGGAGATGGTTCGTGAAGCTATGAATGCAATCATGTCGCTCTTTGTTTCTGATTGTCCTGATTCTAGTTCTGTAGATCAAGATACCAATGCAGAAGGTAAAGAATTGGACCTACTTTGGAGTGCACTATACGTTCAGGAATCAAGTGTG

Coding sequence (CDS)

ATGTTTGTCATATACATTTCTACCTTATGTGATAATGCTAATCAAGGGAAGGAGATGGTTCGTGAAGCTATGAATGCAATCATGTCGCTCTTTGTTTCTGATTGTCCTGATTCTAGTTCTGTAGATCAAGATACCAATGCAGAAGGTAAAGAATTGGACCTACTTTGGAGTGCACTATACGTTCAGGAATCAAGTGTG

Protein sequence

MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALYVQESSV

Homology

[Close]

BLAST of MELO3C000213 vs. NCBI nr
Match: KAA0052917.1 (rab proteins geranylgeranyltransferase component A 2 [Cucumis melo var. makuwa] >TYK11370.1 rab proteins geranylgeranyltransferase component A 2 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY
Sbjct: 423 MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 482

Query: 61  VQESSV 67
           VQESSV
Sbjct: 483 VQESSV 488

[Close]

BLAST of MELO3C000213 vs. NCBI nr
Match: XP_004146177.1 (rab escort protein 1 [Cucumis sativus] >KGN55605.1 hypothetical protein Csa_009709 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 8.1e-25
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLCD+ANQGKEMVR AMN+I  LFVSDCPDSSSVDQDTNAEGK+LDLLWSALY
Sbjct: 423 MFVIYISTLCDSANQGKEMVRAAMNSITLLFVSDCPDSSSVDQDTNAEGKDLDLLWSALY 482

Query: 61  VQESSV 67
           VQESSV
Sbjct: 483 VQESSV 488

[Close]

BLAST of MELO3C000213 vs. NCBI nr
Match: XP_038901467.1 (rab escort protein 1 [Benincasa hispida])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLCDNANQGKEMVR A+N IMSLFVSDCPD+SSVDQDTNAE K+ DLLWSALY
Sbjct: 423 MFVIYISTLCDNANQGKEMVRSAINTIMSLFVSDCPDASSVDQDTNAEDKDFDLLWSALY 482

Query: 61  VQES 65
           VQ+S
Sbjct: 483 VQDS 486

[Close]

BLAST of MELO3C000213 vs. NCBI nr
Match: KAG7015854.1 (Rab escort protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLC NANQGKEMVR A+N+I+SLF S+C D+SSVDQ+ NAE K   LLWSA Y
Sbjct: 423 MFVIYISTLCANANQGKEMVRAAINSIISLFASECSDASSVDQNINAEEKGSCLLWSASY 482

Query: 61  VQESS 66
           +QESS
Sbjct: 483 IQESS 487

[Close]

BLAST of MELO3C000213 vs. NCBI nr
Match: KAG6577815.1 (Rab escort protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLC NANQGKEMVR A+N+I+SLF S+C D+SSVDQ+ NAE K   LLWSA Y
Sbjct: 423 MFVIYISTLCANANQGKEMVRAAINSIISLFASECSDASSVDQNINAEEKGSCLLWSASY 482

Query: 61  VQESS 66
           +QESS
Sbjct: 483 IQESS 487

[Close]

BLAST of MELO3C000213 vs. ExPASy Swiss-Prot
Match: Q8LLD4 (Rab escort protein 1 OS=Arabidopsis thaliana OX=3702 GN=REP PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           M V+Y+STLCDN +QG + +  AM+ ++SL V +   S SV ++  +E K + LLW ALY
Sbjct: 436 MHVLYLSTLCDNDDQGIKALLSAMSNLISLPVPENRQSDSVVENDTSETKPI-LLWRALY 495

Query: 61  VQE 64
           VQE
Sbjct: 496 VQE 497

[Close]

BLAST of MELO3C000213 vs. ExPASy TrEMBL
Match: A0A5A7UEH7 (Rab escort protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00220 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY
Sbjct: 423 MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 482

Query: 61  VQESSV 67
           VQESSV
Sbjct: 483 VQESSV 488

[Close]

BLAST of MELO3C000213 vs. ExPASy TrEMBL
Match: A0A0A0L0Y1 (Rab escort protein 1 OS=Cucumis sativus OX=3659 GN=Csa_3G001770 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLCD+ANQGKEMVR AMN+I  LFVSDCPDSSSVDQDTNAEGK+LDLLWSALY
Sbjct: 423 MFVIYISTLCDSANQGKEMVRAAMNSITLLFVSDCPDSSSVDQDTNAEGKDLDLLWSALY 482

Query: 61  VQESSV 67
           VQESSV
Sbjct: 483 VQESSV 488

[Close]

BLAST of MELO3C000213 vs. ExPASy TrEMBL
Match: A0A6J1L3I4 (Rab escort protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111500204 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-17
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLC NANQGKEMVR A+N+I+SLF S+C D+SSVDQ+ NAE K   LLWSA Y
Sbjct: 423 MFVIYISTLCANANQGKEMVRAAINSIISLFASECSDASSVDQNINAEEKGSCLLWSASY 482

Query: 61  VQESS 66
           +QESS
Sbjct: 483 IQESS 487

[Close]

BLAST of MELO3C000213 vs. ExPASy TrEMBL
Match: A0A6J1EBP1 (Rab escort protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111431106 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-17
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLC NANQGKEMVR A+N+I+SLF S+C D+SSVDQ+ NAE K   LLWSA Y
Sbjct: 423 MFVIYISTLCANANQGKEMVRAAINSIISLFASECSDASSVDQNINAEEKGSCLLWSASY 482

Query: 61  VQESS 66
           +QESS
Sbjct: 483 IQESS 487

[Close]

BLAST of MELO3C000213 vs. ExPASy TrEMBL
Match: A0A6J1CU31 (Rab escort protein 1 OS=Momordica charantia OX=3673 GN=LOC111014788 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           MFVIYISTLC NANQGKE +R A+ AIMSL V + PD   +DQ+ NA+ K+  LLWSALY
Sbjct: 411 MFVIYISTLCGNANQGKETLRAAIAAIMSLIVRERPD--DIDQNINADDKDSALLWSALY 470

Query: 61  VQESSV 67
           +QE S+
Sbjct: 471 IQELSM 474

[Close]

BLAST of MELO3C000213 vs. TAIR 10
Match: AT3G06540.1 (Rab escort protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 1   MFVIYISTLCDNANQGKEMVREAMNAIMSLFVSDCPDSSSVDQDTNAEGKELDLLWSALY 60
           M V+Y+STLCDN +QG + +  AM+ ++SL V +   S SV ++  +E K + LLW ALY
Sbjct: 436 MHVLYLSTLCDNDDQGIKALLSAMSNLISLPVPENRQSDSVVENDTSETKPI-LLWRALY 495

Query: 61  VQE 64
           VQE
Sbjct: 496 VQE 497

The following BLAST results are available for this feature:

BLAST of MELO3C000213 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052917.1	3.5e-28	100.00	rab proteins geranylgeranyltransferase component A 2 [Cucumis melo var. makuwa] ...	[more]
XP_004146177.1	8.1e-25	90.91	rab escort protein 1 [Cucumis sativus] >KGN55605.1 hypothetical protein Csa_0097...	[more]
XP_038901467.1	2.0e-23	87.50	rab escort protein 1 [Benincasa hispida]	[more]
KAG7015854.1	4.8e-17	73.85	Rab escort protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577815.1	4.8e-17	73.85	Rab escort protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C000213 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LLD4	2.1e-07	47.62	Rab escort protein 1 OS=Arabidopsis thaliana OX=3702 GN=REP PE=1 SV=2	[more]

BLAST of MELO3C000213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEH7	1.7e-28	100.00	Rab escort protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139...	[more]
A0A0A0L0Y1	3.9e-25	90.91	Rab escort protein 1 OS=Cucumis sativus OX=3659 GN=Csa_3G001770 PE=3 SV=1	[more]
A0A6J1L3I4	2.3e-17	73.85	Rab escort protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111500204 PE=3 SV=1	[more]
A0A6J1EBP1	2.3e-17	73.85	Rab escort protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111431106 PE=3 SV=1	[more]
A0A6J1CU31	7.7e-13	63.64	Rab escort protein 1 OS=Momordica charantia OX=3673 GN=LOC111014788 PE=3 SV=1	[more]

BLAST of MELO3C000213 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06540.1	1.5e-08	47.62	Rab escort protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000213.1	MELO3C000213.1	mRNA