MELO3C000179.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C000179.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	scaffold_chloroplast2: 55555 .. 56099 (-)
RNA-Seq Expression	MELO3C000179.jh1
Synteny	MELO3C000179.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATTTGTGGCGTCAACCTATAGGGTTTGTTATTTTTCTAATTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCAGGTATAAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACTGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTAGGTTATGAACTATTTGAAATAAATAAAGTGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCGAAAACTTATTTGTTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTATTAAATCTTGGATGGAAATTTCTTTTACCTATATCTCTCGGTAATCTATTATTAACAACATCTTTTCAACTCTTTTCATTGTAAAGGAATACCATATTCTATATTCACGACTTGCTCAAACAAGAGAAAGAAACAAACATAAAATTCTTTAG

mRNA sequence

TGGAATTTGTGGCGTCAACCTATAGGGTTTGTTATTTTTCTAATTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACTGAGTATTCAGGTATAAAATTTGGTTTATTTTATGTTGCTTCCTATCTAAATCTATTAGTTTCTTCGTTATTTGTAACTGTTCTTTACTTGGGTGGTTGGGATATCTCTATTCCATACATATTAGGTTATGAACTATTTGAAATAAATAAAGTGTATGAAGTCTTTGGAATGACAATTAGTATCTTTATTACATTAGCGAAAACTTATTTGTTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTATTAAATCTTGGATGGAAATTTCTTTTACCTATATCTCTCGGTAATCTATTATTAACAACATCTTTTCAACTCTTTTCATTGTAAAGGAATACCATATTCTATATTCACGACTTGCTCAAACAAGAGAAAGAAACAAACATAAAATTCTTTAG

Coding sequence (CDS)

ATGACAATTAGTATCTTTATTACATTAGCGAAAACTTATTTGTTCTTGTTCATTTCTATAGCAACAAGATGGACTTTACCCCGACTAAGAATAGATCAACTATTAAATCTTGGATGGAAATTTCTTTTACCTATATCTCTCGGTAATCTATTATTAACAACATCTTTTCAACTCTTTTCATTGTAA

Protein sequence

MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL

Homology

[Close]

BLAST of MELO3C000179.jh1 vs. NCBI nr
Match: KAF8047144.1 (hypothetical protein N665_3187s0013, partial [Sinapis alba])

HSP 1 Score: 110 bits (276), Expect = 2.57e-29
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 87  TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 146

[Close]

BLAST of MELO3C000179.jh1 vs. NCBI nr
Match: KAF8083977.1 (hypothetical protein N665_0741s0011 [Sinapis alba])

HSP 1 Score: 110 bits (276), Expect = 6.35e-29
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 120 TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 179

[Close]

BLAST of MELO3C000179.jh1 vs. NCBI nr
Match: YP_247655.1 (NADH dehydrogenase subunit 1 [Cucumis sativus] >CAJ00814.1 NADH dehydrogenase subunit 1 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 6.69e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 299 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 358

[Close]

BLAST of MELO3C000179.jh1 vs. NCBI nr
Match: QJD26700.1 (NdhA [Trichosanthes rosthornii])

HSP 1 Score: 115 bits (287), Expect = 6.90e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 301 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 360

[Close]

BLAST of MELO3C000179.jh1 vs. NCBI nr
Match: QZL38650.1 (NADH dehydrogenase subunit A [Citrullus naudinianus])

HSP 1 Score: 115 bits (287), Expect = 7.12e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

Query: 61  L 62
           L
Sbjct: 363 L 363

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot
Match: A4QK75 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta OX=78191 GN=ndhA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 306 TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 365

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot
Match: A4QKG2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Barbarea verna OX=50458 GN=ndhA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 301 TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 360

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot
Match: A4QKQ0 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Capsella bursa-pastoris OX=3719 GN=ndhA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 301 TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 360

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot
Match: A4QKY9 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Crucihimalaya wallichii OX=78192 GN=ndhA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLFISIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 301 TIGIFITLAKTYLFLFISIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 360

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL
Match: A0A6M3RVV4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes rosthornii OX=676073 GN=ndhA PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.34e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 301 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 360

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL
Match: A0A218KGA1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=ndhA PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.45e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL
Match: A0A6H0ES46 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=ndhA PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.45e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL
Match: A0A1X9Q1Y4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.45e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

[Close]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL
Match: A0A1S4EU64 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo OX=3656 GN=ndhA PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.45e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 60
           MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS
Sbjct: 303 MTISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFS 362

[Close]

BLAST of MELO3C000179.jh1 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-24
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   TISIFITLAKTYLFLFISIATRWTLPRLRIDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 61
           TI IFITLAKTYLFLF+SIATRWTLPRLR+DQLLNLGWKFLLPISLGNLLLTTSFQLFSL
Sbjct: 301 TIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSFQLFSL 360

The following BLAST results are available for this feature:

BLAST of MELO3C000179.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8047144.1	2.57e-29	96.67	hypothetical protein N665_3187s0013, partial [Sinapis alba]	[more]
KAF8083977.1	6.35e-29	96.67	hypothetical protein N665_0741s0011 [Sinapis alba]	[more]
YP_247655.1	6.69e-29	100.00	NADH dehydrogenase subunit 1 [Cucumis sativus] >CAJ00814.1 NADH dehydrogenase su...	[more]
QJD26700.1	6.90e-29	100.00	NdhA [Trichosanthes rosthornii]	[more]
QZL38650.1	7.12e-29	100.00	NADH dehydrogenase subunit A [Citrullus naudinianus]	[more]

BLAST of MELO3C000179.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD36	6.0e-25	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
A4QK75	1.1e-23	96.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta OX=781...	[more]
A4QKG2	1.1e-23	96.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Barbarea verna OX=504...	[more]
A4QKQ0	1.1e-23	96.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Capsella bursa-pastor...	[more]
A4QKY9	1.1e-23	96.67	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Crucihimalaya wallich...	[more]

BLAST of MELO3C000179.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3RVV4	3.34e-29	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes rosthor...	[more]
A0A218KGA1	3.45e-29	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. ...	[more]
A0A6H0ES46	3.45e-29	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes kirilow...	[more]
A0A1X9Q1Y4	3.45e-29	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0A1S4EU64	3.45e-29	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of MELO3C000179.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	1.0e-24	95.00	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 4..53 e-value: 8.2E-15 score: 54.9
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 2..58
None	No IPR available	PANTHER	PTHR11432:SF3	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000179.jh1.t1	MELO3C000179.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane