MELO3C000121 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000121
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	S-protein homolog
Location	chr05: 17659398 .. 17659820 (+)
RNA-Seq Expression	MELO3C000121
Synteny	MELO3C000121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTTCGACTTGGCTTGGAAGGTGGCTCGGCTCGGCTCAATTCGACTTGGCTCAGCTCGCAGCTCGTGGCTCGGCTTGGTCATCAGCTCGCGGCTGTAGATCAGCTCAGTCCTCAGCTCAACTCAACTCGGCTCAGCTCGCGGCTCGCGGCTCGGATCAGTTTGGATTTGCGGCTCGGGTCGGCTTGGATTCACAGCTCGGGTACGGCTCGACTTGCATTCTCAATGTTCTTGTTATTACCCTTTAGCTTGCATGCCACAGATGAGTTGATCTCACTTTTACCGGAAACTACAGTCACTATTGTTAACGAAGTGGGTTTCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAGATGACCTAGGAGTTAATGTCGTATCGTCAGATAAAAGTTACTCATTTAACTTTAGACCCAACATCTAG

mRNA sequence

GGAGTTCGACTTGGCTTGGAAGGTGGCTCGGCTCGGCTCAATTCGACTTGGCTCAGCTCGCAGCTCGTGGCTCGGCTTGGTCATCAGCTCGCGGCTGTAGATCAGCTCAGTCCTCAGCTCAACTCAACTCGGCTCAGCTCGCGGCTCGCGGCTCGGATCAGTTTGGATTTGCGGCTCGGGTCGGCTTGGATTCACAGCTCGGGTACGGCTCGACTTGCATTCTCAATGTTCTTGTTATTACCCTTTAGCTTGCATGCCACAGATGAGTTGATCTCACTTTTACCGGAAACTACAGTCACTATTGTTAACGAAGTGGGTTTCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAGATGACCTAGGAGTTAATGTCGTATCGTCAGATAAAAGTTACTCATTTAACTTTAGACCCAACATCTAG

Coding sequence (CDS)

GGAGTTCGACTTGGCTTGGAAGGTGGCTCGGCTCGGCTCAATTCGACTTGGCTCAGCTCGCAGCTCGTGGCTCGGCTTGGTCATCAGCTCGCGGCTGTAGATCAGCTCAGTCCTCAGCTCAACTCAACTCGGCTCAGCTCGCGGCTCGCGGCTCGGATCAGTTTGGATTTGCGGCTCGGGTCGGCTTGGATTCACAGCTCGGGTACGGCTCGACTTGCATTCTCAATGTTCTTGTTATTACCCTTTAGCTTGCATGCCACAGATGAGTTGATCTCACTTTTACCGGAAACTACAGTCACTATTGTTAACGAAGTGGGTTTCCCTCTATTGGGCATTCATTGTAGATCCAAGCAAGATGACCTAGGAGTTAATGTCGTATCGTCAGATAAAAGTTACTCATTTAACTTTAGACCCAACATCTAG

Protein sequence

GVRLGLEGGSARLNSTWLSSQLVARLGHQLAAVDQLSPQLNSTRLSSRLAARISLDLRLGSAWIHSSGTARLAFSMFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI

Homology

[Close]

BLAST of MELO3C000121 vs. NCBI nr
Match: ABY56092.1 (self-incompatibility protein 2 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-27
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 66  SSGTAR---LAFSMFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLG 125
           +SG  R   L FSMFLLLP SLHATDELISLLPETTVTIVNEVG PLLGIHCRSKQDDLG
Sbjct: 68  ASGAGRDIALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLG 127

Query: 126 VNVVSSDKSYSFNFRPNI 141
           VNVVSSDKSYSFNFRPN+
Sbjct: 128 VNVVSSDKSYSFNFRPNV 145

[Close]

BLAST of MELO3C000121 vs. NCBI nr
Match: ABY56091.1 (self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility protein 3 [Cucumis melo] >ABY56096.1 self-incompatibility protein 4 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 72  LAFSMFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKS 131
           L FSMFLLLP SLHATDELISLLPETTVTIVNEVG PLLGIHCRSKQDDLGVNVVSSDKS
Sbjct: 7   LGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKS 66

Query: 132 YSFNFRPNI 141
           YSFNFRPN+
Sbjct: 67  YSFNFRPNV 75

[Close]

BLAST of MELO3C000121 vs. NCBI nr
Match: KAA0046095.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 59/65 (90.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 76  MFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFN 135
           MFLLLP SL ATDELISLLPETTV IVNEVG PLLGIHCRSKQDDLGVNVVS DKSYSFN
Sbjct: 1   MFLLLPISLSATDELISLLPETTVAIVNEVGGPLLGIHCRSKQDDLGVNVVSPDKSYSFN 60

Query: 136 FRPNI 141
           F PNI
Sbjct: 61  FGPNI 65

[Close]

BLAST of MELO3C000121 vs. NCBI nr
Match: KAA0046083.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-22
Identity = 59/65 (90.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 76  MFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFN 135
           MFLLLP SL A DELISLLPETTVTIVNEVG PLLGIH R KQDDLGVNVVSSDKSYSFN
Sbjct: 1   MFLLLPISLRAIDELISLLPETTVTIVNEVGGPLLGIHYRFKQDDLGVNVVSSDKSYSFN 60

Query: 136 FRPNI 141
           FRPNI
Sbjct: 61  FRPNI 65

[Close]

BLAST of MELO3C000121 vs. NCBI nr
Match: KAA0046284.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 88  DELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           +ELISLLPETTVTIVNEVG PLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI
Sbjct: 70  NELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 122

[Close]

BLAST of MELO3C000121 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 97  TTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           T VT+ N +G P L IHC+SKQDDLG++VV   + Y F F+PN+
Sbjct: 29  TVVTMTNLIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNL 72

[Close]

BLAST of MELO3C000121 vs. ExPASy Swiss-Prot
Match: F4JZG1 (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.0e-04
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 96  ETTVTIVNEVG-FPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           ++ VTI N +G    L +HC+S  DDLG+ +++ + S+SF FRP+I
Sbjct: 37  KSVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSI 82

[Close]

BLAST of MELO3C000121 vs. ExPASy TrEMBL
Match: B0F818 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 66  SSGTAR---LAFSMFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLG 125
           +SG  R   L FSMFLLLP SLHATDELISLLPETTVTIVNEVG PLLGIHCRSKQDDLG
Sbjct: 68  ASGAGRDIALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLG 127

Query: 126 VNVVSSDKSYSFNFRPNI 141
           VNVVSSDKSYSFNFRPN+
Sbjct: 128 VNVVSSDKSYSFNFRPNV 145

[Close]

BLAST of MELO3C000121 vs. ExPASy TrEMBL
Match: B0F817 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 72  LAFSMFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKS 131
           L FSMFLLLP SLHATDELISLLPETTVTIVNEVG PLLGIHCRSKQDDLGVNVVSSDKS
Sbjct: 7   LGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKS 66

Query: 132 YSFNFRPNI 141
           YSFNFRPN+
Sbjct: 67  YSFNFRPNV 75

[Close]

BLAST of MELO3C000121 vs. ExPASy TrEMBL
Match: A0A5A7TXE8 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00180 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-23
Identity = 59/65 (90.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 76  MFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFN 135
           MFLLLP SL ATDELISLLPETTV IVNEVG PLLGIHCRSKQDDLGVNVVS DKSYSFN
Sbjct: 1   MFLLLPISLSATDELISLLPETTVAIVNEVGGPLLGIHCRSKQDDLGVNVVSPDKSYSFN 60

Query: 136 FRPNI 141
           F PNI
Sbjct: 61  FGPNI 65

[Close]

BLAST of MELO3C000121 vs. ExPASy TrEMBL
Match: A0A5A7TR91 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00040 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 59/65 (90.77%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 76  MFLLLPFSLHATDELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFN 135
           MFLLLP SL A DELISLLPETTVTIVNEVG PLLGIH R KQDDLGVNVVSSDKSYSFN
Sbjct: 1   MFLLLPISLRAIDELISLLPETTVTIVNEVGGPLLGIHYRFKQDDLGVNVVSSDKSYSFN 60

Query: 136 FRPNI 141
           FRPNI
Sbjct: 61  FRPNI 65

[Close]

BLAST of MELO3C000121 vs. ExPASy TrEMBL
Match: A0A5A7TT98 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold384G00010 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 88  DELISLLPETTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           +ELISLLPETTVTIVNEVG PLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI
Sbjct: 70  NELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 122

[Close]

BLAST of MELO3C000121 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 97  TTVTIVNEVGFPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           T VT+ N +G P L IHC+SKQDDLG++VV   + Y F F+PN+
Sbjct: 29  TVVTMTNLIGGPPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNL 72

[Close]

BLAST of MELO3C000121 vs. TAIR 10
Match: AT3G16970.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 95  PETTVTIVNEVGFPL-LGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           P TTV I N++G  L L  HC+SK DDLG   ++ + ++SF FRP++
Sbjct: 26  PRTTVVIYNDLGGHLPLRYHCKSKNDDLGDRNMAVNGTWSFEFRPSV 72

[Close]

BLAST of MELO3C000121 vs. TAIR 10
Match: AT5G12070.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-05
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 96  ETTVTIVNEVG-FPLLGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           ++ VTI N +G    L +HC+S  DDLG+ +++ + S+SF FRP+I
Sbjct: 37  KSVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSI 82

[Close]

BLAST of MELO3C000121 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 76  MFLLLPFSLHATDELISLLPETTVTIVNEVGFPL-LGIHCRSKQDDLGVNVVSSDKSYSF 135
           + + + FS   TD  ++      V I N +G  L L +HC+S  DDLG+ +++ + S+SF
Sbjct: 16  LLIKIAFSQVKTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSF 75

Query: 136 NFRPNI 141
            FR +I
Sbjct: 76  KFRTSI 81

[Close]

BLAST of MELO3C000121 vs. TAIR 10
Match: AT3G17080.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 42.4 bits (98), Expect = 3.6e-04
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 97  TTVTIVNEVGFPL-LGIHCRSKQDDLGVNVVSSDKSYSFNFRPNI 141
           T+V I N++G  L L  HC+S++DDLG   ++  +S+SF F P+I
Sbjct: 26  TSVVIYNDLGGGLPLRHHCKSREDDLGYQSLAPGRSWSFGFTPDI 70

The following BLAST results are available for this feature:

BLAST of MELO3C000121 vs. NCBI nr


Match Name	E-value	Identity	Description
ABY56092.1	2.8e-27	87.18	self-incompatibility protein 2 [Cucumis melo]	[more]
ABY56091.1	4.8e-27	94.20	self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility p...	[more]
KAA0046095.1	1.2e-22	90.77	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]
KAA0046083.1	4.7e-22	90.77	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]
KAA0046284.1	6.3e-19	96.23	self-incompatibility protein 1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C000121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23020	2.6e-07	54.55	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]
F4JZG1	6.0e-04	43.48	S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1	[more]

BLAST of MELO3C000121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B0F818	1.4e-27	87.18	S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
B0F817	2.3e-27	94.20	S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
A0A5A7TXE8	6.0e-23	90.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00...	[more]
A0A5A7TR91	2.3e-22	90.77	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00...	[more]
A0A5A7TT98	3.1e-19	96.23	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold384G00...	[more]

BLAST of MELO3C000121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04645.1	1.8e-08	54.55	Plant self-incompatibility protein S1 family	[more]
AT3G16970.1	1.9e-05	46.81	Plant self-incompatibility protein S1 family	[more]
AT5G12070.1	4.2e-05	43.48	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	2.1e-04	34.85	Plant self-incompatibility protein S1 family	[more]
AT3G17080.1	3.6e-04	44.44	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 98..140 e-value: 3.7E-7 score: 30.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000121.1	MELO3C000121.1	mRNA