MELO3C000004 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000004
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr08: 25876140 .. 25876386 (+)
RNA-Seq Expression	MELO3C000004
Synteny	MELO3C000004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCAGCACATCAGATATTTAGAGAAGGAGCGCAACAGCTCGACTGAGTTTATGCCCATTTCTGACAATGTTTCTCTTTCCGGACATGATTTGGAGCGACTTCCAAAGGAAGAGAAGACTCGAGGTTCAAGCACTTCTGACTTAGTCTTGCTACACGAAACGAGTGAGGGCTCCAGCTCTCGCAAGAATTGTATGGCAGTCGTCCTCGGAGGGACTTCTCGAATGACCGTACTAGGGAATTCTACT

mRNA sequence

CCACCAGCACATCAGATATTTAGAGAAGGAGCGCAACAGCTCGACTGAGTTTATGCCCATTTCTGACAATGTTTCTCTTTCCGGACATGATTTGGAGCGACTTCCAAAGGAAGAGAAGACTCGAGGTTCAAGCACTTCTGACTTAGTCTTGCTACACGAAACGAGTGAGGGCTCCAGCTCTCGCAAGAATTGTATGGCAGTCGTCCTCGGAGGGACTTCTCGAATGACCGTACTAGGGAATTCTACT

Coding sequence (CDS)

ATGCCCATTTCTGACAATGTTTCTCTTTCCGGACATGATTTGGAGCGACTTCCAAAGGAAGAGAAGACTCGAGGTTCAAGCACTTCTGACTTAGTCTTGCTACACGAAACGAGTGAGGGCTCCAGCTCTCGCAAGAATTGTATGGCAGTCGTCCTCGGAGGGACTTCTCGAATGACCGTACTAGGGAATTCTACT

Protein sequence

MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTVLGNST

Homology

[Close]

BLAST of MELO3C000004 vs. NCBI nr
Match: KAA0055888.1 (hypothetical protein E6C27_scaffold438G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 9.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60
          MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV
Sbjct: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60

Query: 61 LGNST 66
          LGNST
Sbjct: 61 LGNST 65

[Close]

BLAST of MELO3C000004 vs. NCBI nr
Match: TYK06197.1 (hypothetical protein E5676_scaffold287G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60
          MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCM VVLGGTSRMTV
Sbjct: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMGVVLGGTSRMTV 60

Query: 61 LGNST 66
          LGNST
Sbjct: 61 LGNST 65

[Close]

BLAST of MELO3C000004 vs. ExPASy TrEMBL
Match: A0A5A7ULD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00060 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60
          MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV
Sbjct: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60

Query: 61 LGNST 66
          LGNST
Sbjct: 61 LGNST 65

[Close]

BLAST of MELO3C000004 vs. ExPASy TrEMBL
Match: A0A5D3C305 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00550 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMAVVLGGTSRMTV 60
          MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCM VVLGGTSRMTV
Sbjct: 1  MPISDNVSLSGHDLERLPKEEKTRGSSTSDLVLLHETSEGSSSRKNCMGVVLGGTSRMTV 60

Query: 61 LGNST 66
          LGNST
Sbjct: 61 LGNST 65

The following BLAST results are available for this feature:

BLAST of MELO3C000004 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055888.1	9.4e-26	100.00	hypothetical protein E6C27_scaffold438G00060 [Cucumis melo var. makuwa]	[more]
TYK06197.1	2.7e-25	98.46	hypothetical protein E5676_scaffold287G00550 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C000004 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C000004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULD3	4.6e-26	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C305	1.3e-25	98.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C000004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000004.1	MELO3C000004.1	mRNA