MELO.jh103041.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh103041.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	NADH-ubiquinone oxidoreductase chain 6
Location	scaffold_mitochondria: 1094055 .. 1094732 (+)
RNA-Seq Expression	MELO.jh103041.1
Synteny	MELO.jh103041.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTTCTTGCTCCAGCATGTTTGTTCCATTTCAGGGAAGGACGAGGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGCTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACCCACGGAGCGGTGAAAAGACAGGATGTATTCCGACGAAATGCTCTAGATTTTAGGAGGACTATAATGAGGAGGACGACAGAACCACTCACGATCTACTAA

mRNA sequence

ATGCTAGTTCTTGCTCCAGCATGTTTGTTCCATTTCAGGGAAGGACGAGGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGCTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACCCACGGAGCGGTGAAAAGACAGGATGTATTCCGACGAAATGCTCTAGATTTTAGGAGGACTATAATGAGGAGGACGACAGAACCACTCACGATCTACTAA

Coding sequence (CDS)

ATGCTAGTTCTTGCTCCAGCATGTTTGTTCCATTTCAGGGAAGGACGAGGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGCTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACCCACGGAGCGGTGAAAAGACAGGATGTATTCCGACGAAATGCTCTAGATTTTAGGAGGACTATAATGAGGAGGACGACAGAACCACTCACGATCTACTAA

Protein sequence

MLVLAPACLFHFREGRGTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNALDFRRTIMRRTTEPLTIY

Homology

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BLAST of MELO.jh103041.1 vs. NCBI nr
Match: AEN56128.1 (hypothetical protein [Cucumis melo subsp. melo] >AZP40285.1 NADH dehydrogenase subunit 6 [Cucumis melo var. momordica])

HSP 1 Score: 391 bits (1005), Expect = 1.47e-136
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNALDFRRTIMRRTTEPLTIY
Sbjct: 181 RQDVFRRNALDFRRTIMRRTTEPLTIY 207

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BLAST of MELO.jh103041.1 vs. NCBI nr
Match: YP_004849335.1 (NADH dehydrogenase subunit 6 [Cucumis sativus] >ADZ10762.1 NADH dehydrogenase subunit 6 [Cucumis sativus])

HSP 1 Score: 389 bits (999), Expect = 1.21e-135
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTH AVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHSAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNALDFRRTIMRRTTEPLTIY
Sbjct: 181 RQDVFRRNALDFRRTIMRRTTEPLTIY 207

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BLAST of MELO.jh103041.1 vs. NCBI nr
Match: YP_002608398.1 (NADH dehydrogenase subunit 6 [Vitis vinifera] >ACS15202.1 NADH dehydrogenase subunit 6 [Vitis vinifera] >CAQ77660.1 NADH dehydrogenase subunit 6 [Vitis vinifera] >VZL70118.1 nad6 [Vitis riparia x Vitis cinerea])

HSP 1 Score: 375 bits (963), Expect = 6.53e-130
Identity = 203/225 (90.22%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MLVLAPACLFHFREGRGTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLL 60
           M VLAPA  FHFREGR TMILSV SSPALVSGLMV RAKNPVHSVLFPIPVFRNTSGLLL
Sbjct: 1   MRVLAPALKFHFREGRRTMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLL 60

Query: 61  LLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIF 120
           LLGLDF AMIFPVVHIGAIAVSFLFVVMMFHIQIAE HEEVLRYLPVSGIIGLI WWE+F
Sbjct: 61  LLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMF 120

Query: 121 FILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVA 180
           FILDNE+IPLLPTQR TTSLRYTVYA KVRSWTNLETLGNLLYTYYSVWFL+ S ILLVA
Sbjct: 121 FILDNETIPLLPTQRKTTSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVA 180

Query: 181 MIGAIVLTMHRTTHGAVKRQDVFRRNALDFRRTIMRRTTEPLTIY 225
           MIGAIVLTMHRTT   VKRQDVFRRNA+D RRTIMRRTT+PLTIY
Sbjct: 181 MIGAIVLTMHRTTK--VKRQDVFRRNAIDSRRTIMRRTTDPLTIY 223

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BLAST of MELO.jh103041.1 vs. NCBI nr
Match: YP_003587236.1 (NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogenase subunit 6 [Luffa acutangula] >ACV96641.1 NADH dehydrogenase subunit 6 [Citrullus lanatus] >QLJ93016.1 NADH dehydrogenase subunit 6 [Luffa acutangula])

HSP 1 Score: 373 bits (958), Expect = 1.99e-129
Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFL+SSLILLVAMIGAIVLTMHRTT   VK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTK--VK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNA+DFRRTIMRRTT+PLTIY
Sbjct: 181 RQDVFRRNAIDFRRTIMRRTTDPLTIY 205

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BLAST of MELO.jh103041.1 vs. NCBI nr
Match: YP_009522820.1 (NADH dehydrogenase subunit 6 [Styphnolobium japonicum] >AXQ37253.1 NADH dehydrogenase subunit 6 [Styphnolobium japonicum])

HSP 1 Score: 373 bits (957), Expect = 3.03e-129
Identity = 196/207 (94.69%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDF AMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFSAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLI WWE+FFILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLILWWEMFFILDNETIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYY VWFL+ SLILLVAMIGAIVLTMHRTTHGAVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTHGAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNA+DFRRTIMRRTT+PLTIY
Sbjct: 181 RQDVFRRNAIDFRRTIMRRTTDPLTIY 207

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BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 5.9e-102
Identity = 197/207 (95.17%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFL+ SLILLVAMIGAIVLTMHRTT   VK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTT--KVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 226
           RQDVFRRNA+DFRRTIMRRTT+PLTIY
Sbjct: 181 RQDVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.5e-97
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MLVLAPACLFHFREGRGTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLL 60
           M +LAPA  FHF+ GR TMILSVLSSPALVSGLMVVRAKNPVHSVLFPI VF +TSGLL+
Sbjct: 1   MRLLAPAFKFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLI 60

Query: 61  LLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIF 120
           LLGLDF AMI PVVHIGAIAVSFLFVVMMF+IQIAEIHEEVLRYLPVSGIIGLIFWWE+F
Sbjct: 61  LLGLDFSAMISPVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMF 120

Query: 121 FILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVA 180
           FILDNE+IPLLPT RNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFL+SSLILLVA
Sbjct: 121 FILDNETIPLLPTHRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVA 180

Query: 181 MIGAIVLTMHRTTHGAVKRQDVFRRNALDFRRTIMRRTTEP 222
           MIGAIVLTMHRTT   VKRQDVFRRNALD R  IM RT  P
Sbjct: 181 MIGAIVLTMHRTT--KVKRQDVFRRNALDSRSHIMNRTISP 219

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-94
Identity = 190/207 (91.79%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSS ALVSGLMVVRAKNPVHSVLF I VF +TSGLLLLLGLDFFAMIF VV+IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYY VWFL+ SLILLVAMIGAIVLTMHRTT   VK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTT--KVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 226
           RQDVFRRNA+DFRRTIMRRTT+PLTIY
Sbjct: 181 RQDVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 141/189 (74.60%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 28  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 87
           ALVSG MV+RAKNPVHSVLF I VF NTSGLL+LLGLDFFAMIF VV++GAIAV FLFVV
Sbjct: 11  ALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVV 70

Query: 88  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAG 147
           MM HI+I EIHE VLRYLPV GIIGLIF  EIF ++DN+ IP+LPT+ + T L YTVYAG
Sbjct: 71  MMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSATYLTYTVYAG 130

Query: 148 KVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVKRQDVFRRNA 207
           K+ SWTNLETLGNLLYT Y   FL+SSLILLVA+IGAIVLTMH+TT   VKRQDVF +NA
Sbjct: 131 KIHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKTT--KVKRQDVFIQNA 190

Query: 208 LDFRRTIMR 217
           +DF+ TI +
Sbjct: 191 IDFQNTIKK 197

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-44
Identity = 106/201 (52.74%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 23  VLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVS 82
           + SS  L+SG +V++A+NPVHSVLF + VF N +GLL+LLGLDFFA+IF VV++GAIAV 
Sbjct: 7   IFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIAVL 66

Query: 83  FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRY 142
           FLFVVMM +I+I EI E+ LRYLPV G++G++F +EI  ++DN+ IPLL      T+L  
Sbjct: 67  FLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTALLA 126

Query: 143 TVYAGKVRSWT-------NLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHG 202
                    W         ++ LG+LLYTYY  +FL++SLILLVAMIGAIVLTM +    
Sbjct: 127 NYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTMQKGIR- 186

Query: 203 AVKRQDVFRRNALDFRRTIMR 217
            +KRQ VF +N  DF +TI +
Sbjct: 187 -IKRQQVFLQNTRDFAKTIRK 205

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL
Match: G3EU06 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 7.10e-137
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNALDFRRTIMRRTTEPLTIY
Sbjct: 181 RQDVFRRNALDFRRTIMRRTTEPLTIY 207

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL
Match: A0A3Q9CS19 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo var. momordica OX=2034244 GN=nad6 PE=3 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 7.10e-137
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNALDFRRTIMRRTTEPLTIY
Sbjct: 181 RQDVFRRNALDFRRTIMRRTTEPLTIY 207

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL
Match: G3EIY7 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 SV=1)

HSP 1 Score: 389 bits (999), Expect = 5.83e-136
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTH AVK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHSAVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 225
           RQDVFRRNALDFRRTIMRRTTEPLTIY
Sbjct: 181 RQDVFRRNALDFRRTIMRRTTEPLTIY 207

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL
Match: B6VJZ3 (NADH-ubiquinone oxidoreductase chain 6 OS=Vitis vinifera OX=29760 GN=nad6 PE=3 SV=1)

HSP 1 Score: 375 bits (963), Expect = 3.16e-130
Identity = 203/225 (90.22%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MLVLAPACLFHFREGRGTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLL 60
           M VLAPA  FHFREGR TMILSV SSPALVSGLMV RAKNPVHSVLFPIPVFRNTSGLLL
Sbjct: 1   MRVLAPALKFHFREGRRTMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLL 60

Query: 61  LLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIF 120
           LLGLDF AMIFPVVHIGAIAVSFLFVVMMFHIQIAE HEEVLRYLPVSGIIGLI WWE+F
Sbjct: 61  LLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMF 120

Query: 121 FILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVA 180
           FILDNE+IPLLPTQR TTSLRYTVYA KVRSWTNLETLGNLLYTYYSVWFL+ S ILLVA
Sbjct: 121 FILDNETIPLLPTQRKTTSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVA 180

Query: 181 MIGAIVLTMHRTTHGAVKRQDVFRRNALDFRRTIMRRTTEPLTIY 225
           MIGAIVLTMHRTT   VKRQDVFRRNA+D RRTIMRRTT+PLTIY
Sbjct: 181 MIGAIVLTMHRTTK--VKRQDVFRRNAIDSRRTIMRRTTDPLTIY 223

[Close]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL
Match: A0A654IBP3 (NADH-ubiquinone oxidoreductase chain 6 OS=Vitis riparia x Vitis cinerea OX=2018007 GN=nad6 PE=3 SV=1)

HSP 1 Score: 375 bits (963), Expect = 3.16e-130
Identity = 203/225 (90.22%), Postives = 208/225 (92.44%), Query Frame = 0


Query: 1   MLVLAPACLFHFREGRGTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLL 60
           M VLAPA  FHFREGR TMILSV SSPALVSGLMV RAKNPVHSVLFPIPVFRNTSGLLL
Sbjct: 1   MRVLAPALKFHFREGRRTMILSVSSSPALVSGLMVARAKNPVHSVLFPIPVFRNTSGLLL 60

Query: 61  LLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIF 120
           LLGLDF AMIFPVVHIGAIAVSFLFVVMMFHIQIAE HEEVLRYLPVSGIIGLI WWE+F
Sbjct: 61  LLGLDFSAMIFPVVHIGAIAVSFLFVVMMFHIQIAETHEEVLRYLPVSGIIGLILWWEMF 120

Query: 121 FILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVA 180
           FILDNE+IPLLPTQR TTSLRYTVYA KVRSWTNLETLGNLLYTYYSVWFL+ S ILLVA
Sbjct: 121 FILDNETIPLLPTQRKTTSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLVPSPILLVA 180

Query: 181 MIGAIVLTMHRTTHGAVKRQDVFRRNALDFRRTIMRRTTEPLTIY 225
           MIGAIVLTMHRTT   VKRQDVFRRNA+D RRTIMRRTT+PLTIY
Sbjct: 181 MIGAIVLTMHRTTK--VKRQDVFRRNAIDSRRTIMRRTTDPLTIY 223

[Close]

BLAST of MELO.jh103041.1 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 )

HSP 1 Score: 371.7 bits (953), Expect = 4.2e-103
Identity = 197/207 (95.17%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 78
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 79  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 138
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 139 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHGAVK 198
           SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFL+ SLILLVAMIGAIVLTMHRTT   VK
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTT--KVK 180

Query: 199 RQDVFRRNALDFRRTIMRRTTEPLTIY 226
           RQDVFRRNA+DFRRTIMRRTT+PLTIY
Sbjct: 181 RQDVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of MELO.jh103041.1 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 17  GTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHI 76
           GTMILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+
Sbjct: 43  GTMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHL 102

Query: 77  GAIAVSFLFVVMMF 91
                  LF++  F
Sbjct: 103 ATKCQLLLFLISHF 111

[Close]

BLAST of MELO.jh103041.1 vs. TAIR 10
Match: ATMG00590.1 (Cytochrome b/b6 protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 17  GTMILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHI 76
           GTMILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+
Sbjct: 43  GTMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHL 102

Query: 77  GAIAVSFLFVVMMF 91
                  LF++  F
Sbjct: 103 ATKCQLLLFLISHF 111

The following BLAST results are available for this feature:

BLAST of MELO.jh103041.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56128.1	1.47e-136	100.00	hypothetical protein [Cucumis melo subsp. melo] >AZP40285.1 NADH dehydrogenase s...	[more]
YP_004849335.1	1.21e-135	99.52	NADH dehydrogenase subunit 6 [Cucumis sativus] >ADZ10762.1 NADH dehydrogenase su...	[more]
YP_002608398.1	6.53e-130	90.22	NADH dehydrogenase subunit 6 [Vitis vinifera] >ACS15202.1 NADH dehydrogenase sub...	[more]
YP_003587236.1	1.99e-129	96.14	NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogen...	[more]
YP_009522820.1	3.03e-129	94.69	NADH dehydrogenase subunit 6 [Styphnolobium japonicum] >AXQ37253.1 NADH dehydrog...	[more]

BLAST of MELO.jh103041.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60498	5.9e-102	95.17	NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=...	[more]
Q02500	2.5e-97	87.78	NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ...	[more]
P60497	1.2e-94	91.79	NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE...	[more]
P26850	1.8e-66	74.60	NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P...	[more]
Q37626	2.5e-44	52.74	NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ...	[more]

BLAST of MELO.jh103041.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EU06	7.10e-137	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=...	[more]
A0A3Q9CS19	7.10e-137	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo var. momordica OX=2034244...	[more]
G3EIY7	5.83e-136	99.52	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 S...	[more]
B6VJZ3	3.16e-130	90.22	NADH-ubiquinone oxidoreductase chain 6 OS=Vitis vinifera OX=29760 GN=nad6 PE=3 S...	[more]
A0A654IBP3	3.16e-130	90.22	NADH-ubiquinone oxidoreductase chain 6 OS=Vitis riparia x Vitis cinerea OX=20180...	[more]

BLAST of MELO.jh103041.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00270.1	4.2e-103	95.17	NADH dehydrogenase 6	[more]
AT2G07718.1	4.1e-10	52.70	Cytochrome b/b6 protein	[more]
ATMG00590.1	4.1e-10	52.70	Cytochrome b/b6 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	GENE3D	1.20.120.1200		coord: 18..189 e-value: 2.9E-38 score: 132.8
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 32..187 e-value: 7.8E-31 score: 106.7
None	No IPR available	PANTHER	PTHR33269	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 18..215
None	No IPR available	PANTHER	PTHR33269:SF5	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 18..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh103041.1.t1	MELO.jh103041.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity