MELO.jh102975.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102975.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Cytochrome b6-f complex subunit 4
Location	scaffold_chloroplast1: 98812 .. 99336 (+)
RNA-Seq Expression	MELO.jh102975.1
Synteny	MELO.jh102975.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGTTCTTTCGGGGGATGGATCCATAATAATTCACCTATCCTAATAACAAAAAAACCAGATTTGAATGATCCTGTATTAAGAGCTAAATTGGCTAAGGGTATGGGTCATAATTATTACGGAGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCTCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGGCTTTTTTAA

mRNA sequence

ATGTCCGGTTCTTTCGGGGGATGGATCCATAATAATTCACCTATCCTAATAACAAAAAAACCAGATTTGAATGATCCTGTATTAAGAGCTAAATTGGCTAAGGGTATGGGTCATAATTATTACGGAGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCTCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGGCTTTTTTAA

Coding sequence (CDS)

ATGTCCGGTTCTTTCGGGGGATGGATCCATAATAATTCACCTATCCTAATAACAAAAAAACCAGATTTGAATGATCCTGTATTAAGAGCTAAATTGGCTAAGGGTATGGGTCATAATTATTACGGAGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCTCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGGCTTTTTTAA

Protein sequence

MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF

Homology

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BLAST of MELO.jh102975.1 vs. NCBI nr
Match: YP_009326020.1 (cytochrome b6/f complex subunit IV [Citrullus lanatus] >YP_009348062.1 cytochrome b6/f complex subunit IV [Citrullus mucosospermus] >YP_009420825.1 cytochrome b6/f complex subunit IV [Citrullus colocynthis] >YP_009431587.1 cytochrome b6/f complex subunit IV [Citrullus amarus] >YP_009431673.1 cytochrome b6/f complex subunit IV [Citrullus rehmii] >YP_009447481.1 cytochrome b6/f complex subunit IV [Cucurbita maxima] >YP_009447566.1 cytochrome b6/f complex subunit IV [Cucurbita moschata] >YP_009456177.1 cytochrome b6/f complex subunit IV [Lagenaria siceraria] >APW82493.1 cytochrome b6/f complex subunit IV [Citrullus lanatus subsp. vulgaris] >ASY96368.1 cytochrome b6/f complex subunit IV [Cucumis melo subsp. agrestis] >ASY96628.1 cytochrome b6/f complex subunit IV [Cucumis melo var. conomon] >ASY96716.1 cytochrome b6/f complex subunit IV [Cucumis melo var. makuwa] >ASY96803.1 cytochrome b6/f complex subunit IV [Cucumis melo var. momordica] >ASY96890.1 cytochrome b6/f complex subunit IV [Cucumis melo var. dudaim] >ASY96977.1 cytochrome b6/f complex subunit IV [Cucumis melo var. cantalupo] >ASY97151.1 cytochrome b6/f complex subunit IV [Cucumis melo var. inodorus] >ASY97325.1 cytochrome b6/f complex subunit IV [Cucumis melo var. flexuosus] >ASY97500.1 cytochrome b6/f complex subunit IV [Cucumis sativus var. hardwickii] >QHB75995.1 cytochrome b6/f complex subunit IV [Cucumis melo subsp. melo] >QRW36586.1 cytochrome b6/f complex subunit IV [Cucumis melo] >QWV60870.1 cytochrome b6/f complex subunit IV [Cucurbita ficifolia])

HSP 1 Score: 356 bits (914), Expect = 4.30e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. NCBI nr
Match: YP_009674422.1 (cytochrome b6/f complex subunit IV [Siraitia grosvenorii] >QDK59421.1 cytochrome b6/f complex subunit IV [Siraitia grosvenorii])

HSP 1 Score: 355 bits (910), Expect = 1.75e-123
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGT VALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. NCBI nr
Match: QCY72873.1 (PetD [Cucumis hystrix])

HSP 1 Score: 354 bits (908), Expect = 3.54e-123
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIH NSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHKNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. NCBI nr
Match: YP_009123103.1 (cytochrome b6/f complex subunit IV [Cannabis sativa] >YP_009170457.1 cytochrome b6/f complex subunit IV [Humulus lupulus] >AJK91452.1 cytochrome b6/f complex subunit IV [Cannabis sativa] >AKX33578.1 cytochrome b6/f complex subunit IV [Cannabis sativa] >ALE29453.1 cytochrome b6/f complex subunit IV [Humulus lupulus] >AQY15353.1 cytochrome b6/f complex subunit IV [Cannabis sativa] >AVY51904.1 cytochrome b6/f complex subunit IV [Humulus lupulus])

HSP 1 Score: 353 bits (906), Expect = 7.14e-123
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWI NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIENNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. NCBI nr
Match: QGW14973.1 (cytochrome b6/f complex subunit IV [Hippophae tibetana])

HSP 1 Score: 353 bits (905), Expect = 1.01e-122
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWI NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWISNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot
Match: Q2MIF7 (Cytochrome b6-f complex subunit 4 OS=Solanum bulbocastanum OX=147425 GN=petD PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-87
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot
Match: Q2MI70 (Cytochrome b6-f complex subunit 4 OS=Solanum lycopersicum OX=4081 GN=petD PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-87
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot
Match: Q7FNS2 (Cytochrome b6-f complex subunit 4 OS=Atropa belladonna OX=33113 GN=petD PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-87
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot
Match: Q4VZK4 (Cytochrome b6-f complex subunit 4 OS=Cucumis sativus OX=3659 GN=petD PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-87
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot
Match: Q2L939 (Cytochrome b6-f complex subunit 4 OS=Gossypium hirsutum OX=3635 GN=petD PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-87
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL
Match: A0A249RZK4 (Cytochrome b6-f complex subunit 4 OS=Cucumis melo var. cantalupensis OX=3658 GN=petD PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.08e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL
Match: A0A1P8LEA8 (Cytochrome b6-f complex subunit 4 OS=Citrullus mucosospermus OX=519315 GN=petD PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.08e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL
Match: A0A286NFT6 (Cytochrome b6-f complex subunit 4 OS=Cucumis melo var. flexuosus OX=1120798 GN=petD PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.08e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL
Match: A0A249RXT7 (Cytochrome b6-f complex subunit 4 OS=Cucumis melo subsp. agrestis OX=217619 GN=petD PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.08e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL
Match: A0A1P8LF98 (Cytochrome b6-f complex subunit 4 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=petD PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.08e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60
           MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG
Sbjct: 1   MSGSFGGWIHNNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILG 60

Query: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120
           TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA
Sbjct: 61  TIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 120

Query: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174
           GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF
Sbjct: 121 GLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 174

[Close]

BLAST of MELO.jh102975.1 vs. TAIR 10
Match: ATCG00730.1 (photosynthetic electron transfer D )

HSP 1 Score: 321.2 bits (822), Expect = 5.0e-88
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 17  ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 76
           +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3   VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62

Query: 77  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 136
           GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN
Sbjct: 63  GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122

Query: 137 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 175
           PFRRPVATTVFLIGTA ALWLGIGATLPIDKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAAALWLGIGATLPIDKSLTLGLF 160

[Close]

BLAST of MELO.jh102975.1 vs. TAIR 10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 38/123 (30.89%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 52  YIFPVVILGTIACNVGLAV---LEPSMIGE-----PADPFATPLEILPEWYFFPVFQILR 111
           Y +   ++G +A  +  ++     P+++G      PA+P +TP  I+PEWYF P+  ILR
Sbjct: 230 YFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIHAILR 289

Query: 112 TVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATL 167
           ++P+K  GV  +  V   LL +PF +++    + F RP+   +F +  A  L LG     
Sbjct: 290 SIPDKAGGVAAIAPVFICLLALPFFKSMYVRSSSF-RPIHQGMFWLLLADCLLLGWIGCQ 349

[Close]

BLAST of MELO.jh102975.1 vs. TAIR 10
Match: ATMG00220.1 (apocytochrome b )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 38/123 (30.89%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 52  YIFPVVILGTIACNVGLAV---LEPSMIGE-----PADPFATPLEILPEWYFFPVFQILR 111
           Y +   ++G +A  +  ++     P+++G      PA+P +TP  I+PEWYF P+  ILR
Sbjct: 230 YFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIHAILR 289

Query: 112 TVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATL 167
           ++P+K  GV  +  V   LL +PF +++    + F RP+   +F +  A  L LG     
Sbjct: 290 SIPDKAGGVAAIAPVFICLLALPFFKSMYVRSSSF-RPIHQGMFWLLLADCLLLGWIGCQ 349

The following BLAST results are available for this feature:

BLAST of MELO.jh102975.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009326020.1	4.30e-124	100.00	cytochrome b6/f complex subunit IV [Citrullus lanatus] >YP_009348062.1 cytochrom...	[more]
YP_009674422.1	1.75e-123	99.43	cytochrome b6/f complex subunit IV [Siraitia grosvenorii] >QDK59421.1 cytochrome...	[more]
QCY72873.1	3.54e-123	99.43	PetD [Cucumis hystrix]	[more]
YP_009123103.1	7.14e-123	99.43	cytochrome b6/f complex subunit IV [Cannabis sativa] >YP_009170457.1 cytochrome ...	[more]
QGW14973.1	1.01e-122	99.43	cytochrome b6/f complex subunit IV [Hippophae tibetana]	[more]

BLAST of MELO.jh102975.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2MIF7	1.8e-87	100.00	Cytochrome b6-f complex subunit 4 OS=Solanum bulbocastanum OX=147425 GN=petD PE=...	[more]
Q2MI70	1.8e-87	100.00	Cytochrome b6-f complex subunit 4 OS=Solanum lycopersicum OX=4081 GN=petD PE=3 S...	[more]
Q7FNS2	2.4e-87	99.37	Cytochrome b6-f complex subunit 4 OS=Atropa belladonna OX=33113 GN=petD PE=3 SV=...	[more]
Q4VZK4	2.4e-87	99.37	Cytochrome b6-f complex subunit 4 OS=Cucumis sativus OX=3659 GN=petD PE=3 SV=1	[more]
Q2L939	2.4e-87	99.37	Cytochrome b6-f complex subunit 4 OS=Gossypium hirsutum OX=3635 GN=petD PE=3 SV=...	[more]

BLAST of MELO.jh102975.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZK4	2.08e-124	100.00	Cytochrome b6-f complex subunit 4 OS=Cucumis melo var. cantalupensis OX=3658 GN=...	[more]
A0A1P8LEA8	2.08e-124	100.00	Cytochrome b6-f complex subunit 4 OS=Citrullus mucosospermus OX=519315 GN=petD P...	[more]
A0A286NFT6	2.08e-124	100.00	Cytochrome b6-f complex subunit 4 OS=Cucumis melo var. flexuosus OX=1120798 GN=p...	[more]
A0A249RXT7	2.08e-124	100.00	Cytochrome b6-f complex subunit 4 OS=Cucumis melo subsp. agrestis OX=217619 GN=p...	[more]
A0A1P8LF98	2.08e-124	100.00	Cytochrome b6-f complex subunit 4 OS=Citrullus lanatus subsp. vulgaris OX=260674...	[more]

BLAST of MELO.jh102975.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00730.1	5.0e-88	98.73	photosynthetic electron transfer D	[more]
AT2G07727.1	6.0e-09	30.89	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal	[more]
ATMG00220.1	6.0e-09	30.89	apocytochrome b	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.980	plastocyanin oxidoreductase	coord: 81..173 e-value: 2.6E-29 score: 103.2
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 23..80 e-value: 1.3E-40 score: 138.8
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 1..172
None	No IPR available	PANTHER	PTHR19271:SF22	CYTOCHROME B6/F COMPLEX, SUBUNIT IV-RELATED	coord: 1..172
IPR005798	Cytochrome b/b6, C-terminal	PFAM	PF00032	Cytochrom_B_C	coord: 79..167 e-value: 1.8E-19 score: 69.9
IPR005798	Cytochrome b/b6, C-terminal	PROSITE	PS51003	CYTB_CTER	coord: 79..174 score: 16.129162
IPR005798	Cytochrome b/b6, C-terminal	CDD	cd00290	cytochrome_b_C	coord: 28..174 e-value: 6.41999E-60 score: 181.305
IPR005870	Cytochrome b6/f complex, subunit IV	TIGRFAM	TIGR01156	TIGR01156	coord: 17..174 e-value: 1.0E-100 score: 332.3
IPR005870	Cytochrome b6/f complex, subunit IV	PIRSF	PIRSF000033	Cytochrome_b6f_IV	coord: 15..174 e-value: 9.9E-95 score: 312.6
IPR005870	Cytochrome b6/f complex, subunit IV	HAMAP	MF_01344	Cytb6_f_subIV	coord: 15..174 score: 45.15514
IPR036150	Cytochrome b/b6, C-terminal domain superfamily	SUPERFAMILY	81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 21..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102975.1.t1	MELO.jh102975.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016491	oxidoreductase activity