MELO.jh102844.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102844.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12: 8620776 .. 8623515 (-)
RNA-Seq Expression	MELO.jh102844.1
Synteny	MELO.jh102844.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAACAAGCTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGGGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTCTATCTCATCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAAAAGAAGTACAAAACTGAAGTTGCTGGTGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGTAATCCTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTAGCATCAATAATTGAAAAATTGCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTTGTAGTTCGACTTGGGATTGAAGAGAATAATAGAAAGGCAGAAAAGTGTATTATAGATAGTACAATAGATCACAAGGCCAACATTGTGGAAAATAGACCACACAGTAACAAGAAAAGGAAATTTTCTTGTGAAGGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAAACATGTTCAAGCTCATCTCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGGGCAATTCCGAGGAATGGGGGTAGACACTGGTGCTACTCGTCATATTTGTGCCAATAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAACAATTATTTATGGATAACTCCTCTGTGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTTGCAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGTCTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTCCAAGAATGAGATGTACATTGAAAAAGGTTATTTGAGTGATGGTCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGCGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGAATGGCCAAACCTTTAAAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTGCACAAGATATTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAGTTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCACAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAAAAATTTTGTTCAGAACATGGCATTATTCACCAAACTACTGCTCCATACTCACCTCAATCCAATGGAATTGCTGAACGAAAAAACCGAACACTTAAGGAAATGATGAACGCTATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAGCAAATTACTTATTAAACAGAATACCTCATAAGAAGTCACAAAATATTCCTTATGAAAAATGGAAAGGAAGAAAATCTTCATACAAATTCTTAAAAGTGTGGGGGTGCCTAGCAAAGGTTGCAGTGCCTAAATCTAAAGTGGTTAAAATAGGACCAAAAACTGTTGATTGCATATTTATTGGTTATGCTAGCAACAGTTGTGCATATTGATTCCTAGTTCATCAATCAGATGTCTCAGATATACATGTTAATACTATCATGGAATCAAGGAATGTAACATTCTTTGAGAATATTTTTCCACACAAAATGACTTGTAAAGCAAGGTTACAAAAACGTTCTTTTGATTCTATAACGAGTGAACCTCAAAATAGACCAAATGATGAGTTAAACAAGGATGAGGAACTTAGACGAAGTAAAAGGATGAGGATTTCAAAATCATTTGGGCCTGATTTTGTAACATATTTGTTAGAAAATGAATCTTAAACATTTAAAGAGGCCATGTCCTCTCCTGAAGCTCCATATTGGAAAGAAGCTGTGAATAGTGAAATTGAGTCCATTATCCATAACCGTACTTGGGAGCTAGTTGATCTTCCATTAGGAAGTACACCACTTGGTTGCAAATGGATTTTCAAACGAAAGATGAAGACCGATGGGTCAATAGATAAATATAAGGCAAGACTTGTTGCCAAAGGATATAAGCAACAAGAAGGACTTGACTATTTTGATACATACTCACCAGTTACTAGAATTACTTCCATTCGCATGCTCATAGCAATATCAACTTTGCATGGATTTGAGATACATCAGATGGATGTAAAACAGCATTTTTAA

mRNA sequence

ATGACTTCAACAAGCTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGGGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTCTATCTCATCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAAAAGAAGTACAAAACTGAAGTTGCTGGTGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGTAATCCTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAAACATGTTCAAGCTCATCTCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGGGCAATTCCGAGGAATGGGGACTAGGACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGCGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGAATGGCCAAACCTTTAAAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTGCACAAGATATTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAGTTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCACAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAAAAATTTTGTTCAGAACATGGCATTATTCACCAAACTACTGCTCCATACTCACCTCAATCCAATGGAATTGCTGAACGAAAAAACCGAACACTTAAGGAAATGATGAACGCTATGCTTATAAGTTCAGAGGCCATGTCCTCTCCTGAAGCTCCATATTGGAAAGAAGCTGTGAATAGTGAAATTGAGTCCATTATCCATAACCGTACTTGGGAGCTAGTTGATCTTCCATTAGGAAGTACACCACTTGGTTGCAAATGGATTTTCAAACGAAAGATGAAGACCGATGGGTCAATAGATAAATATAAGGCAAGACTTGTTGCCAAAGGATATAAGCAACAAGAAGGACTTGACTATTTTGATACATACTCACCAGTTACTAGAATTACTTCCATTCGCATGCTCATAGCAATATCAACTTTGCATGGATTTGAGATACATCAGATGGATGTAAAACAGCATTTTTAA

Coding sequence (CDS)

ATGACTTCAACAAGCTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGGGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTCTATCTCATCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTAACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACGCTGTACAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAAAAGAAGTACAAAACTGAAGTTGCTGGTGCAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGTAATCCTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGGACATCAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAAACATGTTCAAGCTCATCTCACAGAAGTTGATGAAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAGAGTGCAACATGGTGGGCAATTCCGAGGAATGGGGACTAGGACATGTCAACTTCAATTCTTTGCGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGCGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGAATGGCCAAACCTTTAAAGTTAATTCACAGTGATATTTGTGACTTGAAATTTGTGCAAACTAGAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTGCACAAGATATTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAGTTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCACAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAAAAATTTTGTTCAGAACATGGCATTATTCACCAAACTACTGCTCCATACTCACCTCAATCCAATGGAATTGCTGAACGAAAAAACCGAACACTTAAGGAAATGATGAACGCTATGCTTATAAGTTCAGAGGCCATGTCCTCTCCTGAAGCTCCATATTGGAAAGAAGCTGTGAATAGTGAAATTGAGTCCATTATCCATAACCGTACTTGGGAGCTAGTTGATCTTCCATTAGGAAGTACACCACTTGGTTGCAAATGGATTTTCAAACGAAAGATGAAGACCGATGGGTCAATAGATAAATATAAGGCAAGACTTGTTGCCAAAGGATATAAGCAACAAGAAGGACTTGACTATTTTGATACATACTCACCAGTTACTAGAATTACTTCCATTCGCATGCTCATAGCAATATCAACTTTGCATGGATTTGAGATACATCAGATGGATGTAAAACAGCATTTTTAA

Protein sequence

MTSTSFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFLDYKMVNSKTVISQVQVILHDIHAENMTLSESFQVQIKNRDSRKSSMASASTATKWDINLRIVVSQRTFRKKHVQAHLTEVDEVSDGVADIDLCAVISECNMVGNSEEWGLGHVNFNSLRRLINMNLIPKFTFDTNHRCEVCAESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEKFCSEHGIIHQTTAPYSPQSNGIAERKNRTLKEMMNAMLISSEAMSSPEAPYWKEAVNSEIESIIHNRTWELVDLPLGSTPLGCKWIFKRKMKTDGSIDKYKARLVAKGYKQQEGLDYFDTYSPVTRITSIRMLIAISTLHGFEIHQMDVKQHF

Homology

[Close]

BLAST of MELO.jh102844.1 vs. NCBI nr
Match: KZV26201.1 (hypothetical protein F511_28547 [Dorcoceras hygrometricum])

HSP 1 Score: 540 bits (1392), Expect = 1.81e-179
Identity = 350/920 (38.04%), Postives = 412/920 (44.78%), Query Frame = 0


Query: 5   SFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEK 64
           S N+   +   HGEKPEKF G DFKRWQQKMLFYL TLNL +FL+EDAP + E ET+K+K
Sbjct: 3   SVNATVASNTVHGEKPEKFNGTDFKRWQQKMLFYLTTLNLVRFLREDAPTVSENETDKDK 62

Query: 65  QLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVG 124
           + A +AW H ++LC+NY+LNGLDN+LYNVYS + +AK LW SLEKKYKTE AG KKFIVG
Sbjct: 63  RAAFEAWGHGDFLCRNYVLNGLDNSLYNVYSPMTTAKLLWESLEKKYKTEGAGLKKFIVG 122

Query: 125 KFLDYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN---- 184
           KFLDYKMV+SK+VISQVQ   +ILHD+HAE M +SESFQV              KN    
Sbjct: 123 KFLDYKMVDSKSVISQVQEMQLILHDLHAEGMEMSESFQVAAVIEKLPPLWKDFKNYLKH 182

Query: 185 -----------------RDSRKSSMASASTATKWD----INLRIVVSQRTFRKKH----- 244
                             D+RK S +  +     D    +       +R F+ K      
Sbjct: 183 KRKEMGLEDLIINLRIEEDNRKQSESKGTKRPIEDGSNLVEPNASKGKRKFKGKDKGKGK 242

Query: 245 ---------------------------------VQAHLTEVDEVSDGVADIDLCAVISEC 304
                                            V  HLT  + V     ++DL AV  E 
Sbjct: 243 KFKGTCYNCGKPNHMAKDCRRPKKAKKEQQGKDVANHLTTSNVVD---MEMDLAAVTFEA 302

Query: 305 NMVGNSEEWG-------------------------------------------------- 364
           NMV N  +W                                                   
Sbjct: 303 NMVDNPRQWWVDTGATRHICSEKAMFSTYVSVTGRKLFMGNSASSDVAGIGKVVLKMTSR 362

Query: 365 ------------------------------------------------------------ 424
                                                                       
Sbjct: 363 KELALIDVLHVPEIRKNLVSGSALVKAGFRLVFESNKFILSKNGVFIGKGYLEDNLFKMN 422

Query: 425 -----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEV 484
                                        LGHVN+N+L+RL+ +NL+P    +  H+CEV
Sbjct: 423 VMPVLREFDGNKIKASTYIVECSNLWHGRLGHVNYNTLKRLVKLNLLPTMDINKTHKCEV 482

Query: 485 CAESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLK 521
           C E+KMTK PFHS ER   PL+LIHSDICDLKFVQTRGGKKYF+TFIDDCTRYCYVYLL+
Sbjct: 483 CVEAKMTKLPFHSVERSTTPLELIHSDICDLKFVQTRGGKKYFVTFIDDCTRYCYVYLLR 542

[Close]

BLAST of MELO.jh102844.1 vs. NCBI nr
Match: CAN73567.1 (hypothetical protein VITISV_003451 [Vitis vinifera])

HSP 1 Score: 536 bits (1380), Expect = 2.02e-174
Identity = 337/853 (39.51%), Postives = 409/853 (47.95%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 30  AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 89

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 90  IDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 149

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHA+ M LSE+FQV              KN       
Sbjct: 150 DYKMVDSKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 209

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 210 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKG 269

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D ++  V+DIDL  V+SE N+
Sbjct: 270 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNL 329

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 330 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSG 389

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 390 KELTLTNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLN 449

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       L HVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 450 VMTIIKSNMNKASTSTYMLESSNLWHGRLRHVNYDTLRRLINLNHIPTFQINSNHKCETC 509

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 510 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 569

[Close]

BLAST of MELO.jh102844.1 vs. NCBI nr
Match: KZV51625.1 (hypothetical protein F511_24998 [Dorcoceras hygrometricum])

HSP 1 Score: 528 bits (1359), Expect = 7.93e-171
Identity = 337/905 (37.24%), Postives = 415/905 (45.86%), Query Frame = 0


Query: 1   MTSTSFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGET 60
           M+ST+   +P   V H EKP KF G DFKRWQQKMLFYL TL+L++FL E+ P++ EG+T
Sbjct: 1   MSSTTSTPLPSAHV-HTEKPFKFSGADFKRWQQKMLFYLTTLSLSRFLTEEPPVVTEGDT 60

Query: 61  NKEKQLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKK 120
           + +K+ AVDAW H+++LC+NYILN LD+ LY VY SV +AK LW SLEKKYKTE AG KK
Sbjct: 61  DTQKRTAVDAWNHSDFLCRNYILNSLDDVLYGVYCSVKTAKELWNSLEKKYKTEDAGVKK 120

Query: 121 FIVGKFLDYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN 180
           F+VGKFLDYKMV++K+V+SQVQ   +I+HD+ AE M ++E FQV              KN
Sbjct: 121 FVVGKFLDYKMVDAKSVMSQVQEIQIIIHDLLAEGMKINEPFQVAAIIEKLPQMWRDFKN 180

Query: 181 ---------------------RDSRKSSMASASTATKWDINLRIVVS------QRTFRKK 240
                                 DSR S   +   A + +    +  S      +R+F +K
Sbjct: 181 YLKHKRKEMTLEELIVRLRIEEDSRTSDAKTHKKAMEAEAKANLTESSNAQKRKRSFNEK 240

Query: 241 -------------------HV----------------QAHLTEVDEVSDGVADIDLCAVI 300
                              H+                QA++ +   V   ++ IDL  V+
Sbjct: 241 KRGTAKKFKGTCYNCGKPNHMAKDCRLPKKDKSQNRGQANVVQDRSVPIDLSKIDLSTVV 300

Query: 301 SECNMVGNSEEWG----------------------------------------------- 360
            E N+V N  EW                                                
Sbjct: 301 FETNLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDRKLYMGNSTTSDVVGIGNVVLKM 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 TSGKEVNLKNVLHVPDIRKNLVSGSLLSKAGFRLVFESDKFVLTKGGMFVGKGYQHNGLF 420

Query: 421 --------------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHR 480
                                           LGHVNFN+L+RL N+N++P F  +   +
Sbjct: 421 KLNVMNVIRPEAKNKINNSSYLIEISNLWHERLGHVNFNTLQRLANLNVLPAFKRNPQEK 480

Query: 481 CEVCAESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVY 521
           CE+C E+K+ KAPFHS  R  KPL+LIH+D+CDLK VQTRGGK+YFITFIDDCTRYCYVY
Sbjct: 481 CEICVETKLAKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKRYFITFIDDCTRYCYVY 540

[Close]

BLAST of MELO.jh102844.1 vs. NCBI nr
Match: RVX00298.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 523 bits (1347), Expect = 1.34e-169
Identity = 342/902 (37.92%), Postives = 412/902 (45.68%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 30  AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 89

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 90  IDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 149

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHAE M LSE+FQV              KN       
Sbjct: 150 DYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 209

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 210 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKG 269

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D+++  V DIDL AV+SE N+
Sbjct: 270 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNL 329

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 330 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSG 389

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 390 KELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFDSNKVVLSKSGMYVGKGYMSDGMWKLN 449

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       LGHVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 450 VMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETC 509

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 510 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 569

[Close]

BLAST of MELO.jh102844.1 vs. NCBI nr
Match: RVX00859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 523 bits (1347), Expect = 2.55e-169
Identity = 342/902 (37.92%), Postives = 412/902 (45.68%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 4   AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 63

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 64  IDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 123

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHAE M LSE+FQV              KN       
Sbjct: 124 DYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 183

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 184 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKG 243

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D+++  V DIDL AV+SE N+
Sbjct: 244 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNL 303

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 304 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSG 363

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 364 KELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLN 423

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       LGHVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 424 VMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETC 483

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 484 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 543

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.4e-37
Identity = 122/499 (24.45%), Postives = 184/499 (36.87%), Query Frame = 0


Query: 237 LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVCAESKMTKAPFH-STERMAKPLKLIHSDI 296
           +GH++   L+ L   +LI      T   C+ C   K  +  F  S+ER    L L++SD+
Sbjct: 429 MGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDV 488

Query: 297 CDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYKKEVENQLSTKIKAIR 356
           C    +++ GG KYF+TFIDD +R  +VY+LK+KD+  +VF+ +   VE +   K+K +R
Sbjct: 489 CGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLR 548

Query: 357 SDRGGEY-GPPFEKFCSEHGIIHQTTAPYSPQSNGIAERKNRTLKEMMNAM--------- 416
           SD GGEY    FE++CS HGI H+ T P +PQ NG+AER NRT+ E + +M         
Sbjct: 549 SDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKS 608

Query: 417 ------------------------------------------------------------ 476
                                                                       
Sbjct: 609 FWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLD 668

Query: 477 ------------------------------------------------------------ 522
                                                                       
Sbjct: 669 DKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFV 728

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-23
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 420  WKEAVNSEIESIIHNRTWELVDLPLGS-TPLGCKWIFKRKMKTDGSIDKYKARLVAKGYK 479
            W++A+ SEI + I N TW+LV  P  S T +GC+WIF +K  +DGS+++YKARLVAKGY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 480  QQEGLDYFDTYSPVTRITSIRMLIAISTLHGFEIHQMDVKQHF 522
            Q+ GLDY +T+SPV + TSIR+++ ++    + I Q+DV   F
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAF 1053

HSP 2 Score: 106.3 bits (264), Expect = 1.1e-21
Identity = 63/187 (33.69%), Postives = 105/187 (56.15%), Query Frame = 0


Query: 237 LGHVNFNSLRRLINMNLIPKFTFDTNHR---CEVCAESKMTKAPF-HSTERMAKPLKLIH 296
           LGH +   L  +I+ + +P    + +H+   C  C  +K  K PF +ST   +KPL+ I+
Sbjct: 450 LGHPSLAILNSVISNHSLP--VLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIY 509

Query: 297 SDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYKKEVENQLSTKIK 356
           SD+     +      +Y++ F+D  TRY ++Y LK K +  + F ++K  VEN+  T+I 
Sbjct: 510 SDVWSSPILSI-DNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIG 569

Query: 357 AIRSDRGGEYGPPFEKFCSEHGIIHQTTAPYSPQSNGIAERKNRTLKEMMNAMLISSEAM 416
            + SD GGE+      + S+HGI H T+ P++P+ NG++ERK+R + E M   L+S  ++
Sbjct: 570 TLYSDNGGEF-VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVE-MGLTLLSHASV 629

Query: 417 SSPEAPY 420
                PY
Sbjct: 630 PKTYWPY 631

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-22
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 381  APYSPQSNGIAERKNRTLKEMMNAMLISSEAMSSPEAPY-------WKEAVNSEIESIIH 440
            AP +  S G   +          ++ +S  A S P           W+ A+ SEI + I 
Sbjct: 922  APLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIG 981

Query: 441  NRTWELVDLPLGS-TPLGCKWIFKRKMKTDGSIDKYKARLVAKGYKQQEGLDYFDTYSPV 500
            N TW+LV  P    T +GC+WIF +K  +DGS+++YKARLVAKGY Q+ GLDY +T+SPV
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 501  TRITSIRMLIAISTLHGFEIHQMDVKQHF 522
             + TSIR+++ ++    + I Q+DV   F
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAF 1070

HSP 2 Score: 100.9 bits (250), Expect = 4.5e-20
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 0


Query: 265 CEVCAESKMTKAPF-HSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYV 324
           C  C  +K  K PF  ST    +PL+ I+SD+     + +    +Y++ F+D  TRY ++
Sbjct: 500 CSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSP-ILSHDNYRYYVIFVDHFTRYTWL 559

Query: 325 YLLKSKDEAVEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEKFCSEHGIIHQTTAPY 384
           Y LK K +  E F  +K  +EN+  T+I    SD GGE+   +E F S+HGI H T+ P+
Sbjct: 560 YPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYF-SQHGISHLTSPPH 619

Query: 385 SPQSNGIAERKNRTLKEMMNAMLISSEAMSSPEAPY 420
           +P+ NG++ERK+R + E     L+S  ++     PY
Sbjct: 620 TPEHNGLSERKHRHIVE-TGLTLLSHASIPKTYWPY 652

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 5.8e-20
Identity = 58/196 (29.59%), Postives = 93/196 (47.45%), Query Frame = 0


Query: 238 GHVNFNSLRRLINMNLIPKFTFDTN-----HRCEVCAESKMTKAPFHSTE---RMAKPLK 297
           GH++   L  +   N+    +   N       CE C   K  + PF   +    + +PL 
Sbjct: 423 GHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLF 482

Query: 298 LIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSKDEAVEVFKLYKKEVENQLST 357
           ++HSD+C      T   K YF+ F+D  T YC  YL+K K +   +F+ +  + E   + 
Sbjct: 483 VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNL 542

Query: 358 KIKAIRSDRGGEY-GPPFEKFCSEHGIIHQTTAPYSPQSNGIAERKNRTLKEMMNAMLIS 417
           K+  +  D G EY      +FC + GI +  T P++PQ NG++ER  RT+ E    M+  
Sbjct: 543 KVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSG 602

Query: 418 SEAMSSPEAPYWKEAV 425
           ++   S    +W EAV
Sbjct: 603 AKLDKS----FWGEAV 614

HSP 2 Score: 90.1 bits (222), Expect = 7.9e-17
Identity = 47/137 (34.31%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 392  ERKNRTLKEMMNAMLISSEAMSS-PEAPY------WKEAVNSEIESIIHNRTWELVDLPL 451
            E  N   K ++NA  I ++  +S  E  Y      W+EA+N+E+ +   N TW +   P 
Sbjct: 871  EEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPE 930

Query: 452  GSTPLGCKWIFKRKMKTDGSIDKYKARLVAKGYKQQEGLDYFDTYSPVTRITSIRMLIAI 511
                +  +W+F  K    G+  +YKARLVA+G+ Q+  +DY +T++PV RI+S R ++++
Sbjct: 931  NKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSL 990

Query: 512  STLHGFEIHQMDVKQHF 522
               +  ++HQMDVK  F
Sbjct: 991  VIQYNLKVHQMDVKTAF 1007

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-20
Identity = 40/88 (45.45%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 418 PYWKEAVNSEIESIIHNRTWELVDLPLGSTPLGCKWIFKRKMKTDGSIDKYKARLVAKGY 477
           P W +A+  E++++  N+TW LV  P+    LGCKW+FK K+ +DG++D+ KARLVAKG+
Sbjct: 38  PGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

Query: 478 KQQEGLDYFDTYSPVTRITSIRMLIAIS 506
            Q+EG+ + +TYSPV R  +IR ++ ++
Sbjct: 98  HQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL
Match: A0A2Z7AWC5 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_28547 PE=4 SV=1)

HSP 1 Score: 540 bits (1392), Expect = 8.77e-180
Identity = 350/920 (38.04%), Postives = 412/920 (44.78%), Query Frame = 0


Query: 5   SFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEK 64
           S N+   +   HGEKPEKF G DFKRWQQKMLFYL TLNL +FL+EDAP + E ET+K+K
Sbjct: 3   SVNATVASNTVHGEKPEKFNGTDFKRWQQKMLFYLTTLNLVRFLREDAPTVSENETDKDK 62

Query: 65  QLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVG 124
           + A +AW H ++LC+NY+LNGLDN+LYNVYS + +AK LW SLEKKYKTE AG KKFIVG
Sbjct: 63  RAAFEAWGHGDFLCRNYVLNGLDNSLYNVYSPMTTAKLLWESLEKKYKTEGAGLKKFIVG 122

Query: 125 KFLDYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN---- 184
           KFLDYKMV+SK+VISQVQ   +ILHD+HAE M +SESFQV              KN    
Sbjct: 123 KFLDYKMVDSKSVISQVQEMQLILHDLHAEGMEMSESFQVAAVIEKLPPLWKDFKNYLKH 182

Query: 185 -----------------RDSRKSSMASASTATKWD----INLRIVVSQRTFRKKH----- 244
                             D+RK S +  +     D    +       +R F+ K      
Sbjct: 183 KRKEMGLEDLIINLRIEEDNRKQSESKGTKRPIEDGSNLVEPNASKGKRKFKGKDKGKGK 242

Query: 245 ---------------------------------VQAHLTEVDEVSDGVADIDLCAVISEC 304
                                            V  HLT  + V     ++DL AV  E 
Sbjct: 243 KFKGTCYNCGKPNHMAKDCRRPKKAKKEQQGKDVANHLTTSNVVD---MEMDLAAVTFEA 302

Query: 305 NMVGNSEEWG-------------------------------------------------- 364
           NMV N  +W                                                   
Sbjct: 303 NMVDNPRQWWVDTGATRHICSEKAMFSTYVSVTGRKLFMGNSASSDVAGIGKVVLKMTSR 362

Query: 365 ------------------------------------------------------------ 424
                                                                       
Sbjct: 363 KELALIDVLHVPEIRKNLVSGSALVKAGFRLVFESNKFILSKNGVFIGKGYLEDNLFKMN 422

Query: 425 -----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEV 484
                                        LGHVN+N+L+RL+ +NL+P    +  H+CEV
Sbjct: 423 VMPVLREFDGNKIKASTYIVECSNLWHGRLGHVNYNTLKRLVKLNLLPTMDINKTHKCEV 482

Query: 485 CAESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLK 521
           C E+KMTK PFHS ER   PL+LIHSDICDLKFVQTRGGKKYF+TFIDDCTRYCYVYLL+
Sbjct: 483 CVEAKMTKLPFHSVERSTTPLELIHSDICDLKFVQTRGGKKYFVTFIDDCTRYCYVYLLR 542

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL
Match: A5AMN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 536 bits (1380), Expect = 9.79e-175
Identity = 337/853 (39.51%), Postives = 409/853 (47.95%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 30  AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 89

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 90  IDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 149

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHA+ M LSE+FQV              KN       
Sbjct: 150 DYKMVDSKTVVSQVQELQVILHEIHADGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 209

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 210 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQANFVEHGQSSKAKTNNNKGKGSKLGPKG 269

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D ++  V+DIDL  V+SE N+
Sbjct: 270 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDNITKNVSDIDLTTVVSEVNL 329

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 330 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSG 389

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 390 KELTLTNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLN 449

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       L HVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 450 VMTIIKSNMNKASTSTYMLESSNLWHGRLRHVNYDTLRRLINLNHIPTFQINSNHKCETC 509

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 510 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 569

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL
Match: A0A2Z7CZB6 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_24998 PE=4 SV=1)

HSP 1 Score: 528 bits (1359), Expect = 3.84e-171
Identity = 337/905 (37.24%), Postives = 415/905 (45.86%), Query Frame = 0


Query: 1   MTSTSFNSVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGET 60
           M+ST+   +P   V H EKP KF G DFKRWQQKMLFYL TL+L++FL E+ P++ EG+T
Sbjct: 1   MSSTTSTPLPSAHV-HTEKPFKFSGADFKRWQQKMLFYLTTLSLSRFLTEEPPVVTEGDT 60

Query: 61  NKEKQLAVDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKK 120
           + +K+ AVDAW H+++LC+NYILN LD+ LY VY SV +AK LW SLEKKYKTE AG KK
Sbjct: 61  DTQKRTAVDAWNHSDFLCRNYILNSLDDVLYGVYCSVKTAKELWNSLEKKYKTEDAGVKK 120

Query: 121 FIVGKFLDYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN 180
           F+VGKFLDYKMV++K+V+SQVQ   +I+HD+ AE M ++E FQV              KN
Sbjct: 121 FVVGKFLDYKMVDAKSVMSQVQEIQIIIHDLLAEGMKINEPFQVAAIIEKLPQMWRDFKN 180

Query: 181 ---------------------RDSRKSSMASASTATKWDINLRIVVS------QRTFRKK 240
                                 DSR S   +   A + +    +  S      +R+F +K
Sbjct: 181 YLKHKRKEMTLEELIVRLRIEEDSRTSDAKTHKKAMEAEAKANLTESSNAQKRKRSFNEK 240

Query: 241 -------------------HV----------------QAHLTEVDEVSDGVADIDLCAVI 300
                              H+                QA++ +   V   ++ IDL  V+
Sbjct: 241 KRGTAKKFKGTCYNCGKPNHMAKDCRLPKKDKSQNRGQANVVQDRSVPIDLSKIDLSTVV 300

Query: 301 SECNMVGNSEEWG----------------------------------------------- 360
            E N+V N  EW                                                
Sbjct: 301 FETNLVDNPREWWVDTGATSHICSEKGMFSSYTAVSDRKLYMGNSTTSDVVGIGNVVLKM 360

Query: 361 ------------------------------------------------------------ 420
                                                                       
Sbjct: 361 TSGKEVNLKNVLHVPDIRKNLVSGSLLSKAGFRLVFESDKFVLTKGGMFVGKGYQHNGLF 420

Query: 421 --------------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHR 480
                                           LGHVNFN+L+RL N+N++P F  +   +
Sbjct: 421 KLNVMNVIRPEAKNKINNSSYLIEISNLWHERLGHVNFNTLQRLANLNVLPAFKRNPQEK 480

Query: 481 CEVCAESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVY 521
           CE+C E+K+ KAPFHS  R  KPL+LIH+D+CDLK VQTRGGK+YFITFIDDCTRYCYVY
Sbjct: 481 CEICVETKLAKAPFHSVTRSTKPLELIHTDVCDLKLVQTRGGKRYFITFIDDCTRYCYVY 540

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL
Match: A0A438IU85 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1552 PE=4 SV=1)

HSP 1 Score: 523 bits (1347), Expect = 6.51e-170
Identity = 342/902 (37.92%), Postives = 412/902 (45.68%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 30  AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 89

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 90  IDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 149

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHAE M LSE+FQV              KN       
Sbjct: 150 DYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 209

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 210 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKG 269

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D+++  V DIDL AV+SE N+
Sbjct: 270 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNL 329

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 330 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSG 389

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 390 KELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFDSNKVVLSKSGMYVGKGYMSDGMWKLN 449

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       LGHVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 450 VMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETC 509

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 510 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 569

[Close]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL
Match: A0A438IVT6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4199 PE=4 SV=1)

HSP 1 Score: 523 bits (1347), Expect = 1.23e-169
Identity = 342/902 (37.92%), Postives = 412/902 (45.68%), Query Frame = 0


Query: 8   SVPVTGVAHGEKPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEGETNKEKQLA 67
           +VP++ V+ GEKPEKF G++FKRWQQKMLFYL TLNLA+FL EDAP L E E + +   A
Sbjct: 4   AVPIS-VSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISA 63

Query: 68  VDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFL 127
           +DAWKH+++LC+NY++NGL ++LYNVYS   +AK LW SL++KYKTE AGAKKF+VG+FL
Sbjct: 64  IDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 123

Query: 128 DYKMVNSKTVISQVQ---VILHDIHAENMTLSESFQV------------QIKN------- 187
           DYKMV+SKTV+SQVQ   VILH+IHAE M LSE+FQV              KN       
Sbjct: 124 DYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 183

Query: 188 --------------RDSRKSSMASASTAT-----------------------------KW 247
                          D+R+S    A T                               K 
Sbjct: 184 EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSKLGPKG 243

Query: 248 DINLRIVVSQRTFR--------------KKHVQAHLTEVDEVSDGVADIDLCAVISECNM 307
            I+ +     + F               KK+       +D+++  V DIDL AV+SE N+
Sbjct: 244 GISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLTAVVSEVNL 303

Query: 308 VG-NSEEWG--------------------------------------------------- 367
           VG N +EW                                                    
Sbjct: 304 VGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSG 363

Query: 368 ------------------------------------------------------------ 427
                                                                       
Sbjct: 364 KELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFESNKVVLSKSGMYVGKGYMSDGMWKLN 423

Query: 428 ----------------------------LGHVNFNSLRRLINMNLIPKFTFDTNHRCEVC 487
                                       LGHVN+++LRRLIN+N IP F  ++NH+CE C
Sbjct: 424 VMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETC 483

Query: 488 AESKMTKAPFHSTERMAKPLKLIHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKS 521
            E+K+T++ F S ER  +PL LIHSDICDLKFVQTRGG KYFITF+DD T+YCYVYLLKS
Sbjct: 484 VEAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKS 543

[Close]

BLAST of MELO.jh102844.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-27
Identity = 48/102 (47.06%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 420 WKEAVNSEIESIIHNRTWELVDLPLGSTPLGCKWIFKRKMKTDGSIDKYKARLVAKGYKQ 479
           W  A++ EI ++    TWE+  LP    P+GCKW++K K  +DG+I++YKARLVAKGY Q
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 480 QEGLDYFDTYSPVTRITSIRMLIAISTLHGFEIHQMDVKQHF 522
           QEG+D+ +T+SPV ++TS+++++AIS ++ F +HQ+D+   F
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAF 199

[Close]

BLAST of MELO.jh102844.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 100.1 bits (248), Expect = 5.4e-21
Identity = 40/88 (45.45%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 418 PYWKEAVNSEIESIIHNRTWELVDLPLGSTPLGCKWIFKRKMKTDGSIDKYKARLVAKGY 477
           P W +A+  E++++  N+TW LV  P+    LGCKW+FK K+ +DG++D+ KARLVAKG+
Sbjct: 38  PGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

Query: 478 KQQEGLDYFDTYSPVTRITSIRMLIAIS 506
            Q+EG+ + +TYSPV R  +IR ++ ++
Sbjct: 98  HQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of MELO.jh102844.1 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-12
Identity = 48/154 (31.17%), Postives = 75/154 (48.70%), Query Frame = 0


Query: 19  KPEKFGGVDFKRWQQKMLFYLITLNLAKFLKEDAPILPEG---ETNKEKQLAVDA----W 78
           K  +F G  +  W  +M  +L  L L   L E  P +      ETN  +    DA    W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 79  KHAEYLCKNYILNGLDNTLYNVYS-SVDSAKNLWTSLEKKYKTEVAGAKKFIVGKFLDYK 138
              +YLC  +++N L + LY  YS     AK LW  L+  Y+ + + +K+  V K+++++
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 139 MVNSKTVISQVQV---ILHDIHAENMTLSESFQV 162
           MV  + ++ QVQV   I   I +  M L E+F V
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHV 347

The following BLAST results are available for this feature:

BLAST of MELO.jh102844.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KZV26201.1	1.81e-179	38.04	hypothetical protein F511_28547 [Dorcoceras hygrometricum]	[more]
CAN73567.1	2.02e-174	39.51	hypothetical protein VITISV_003451 [Vitis vinifera]	[more]
KZV51625.1	7.93e-171	37.24	hypothetical protein F511_24998 [Dorcoceras hygrometricum]	[more]
RVX00298.1	1.34e-169	37.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX00859.1	2.55e-169	37.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of MELO.jh102844.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-37	24.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.5e-23	49.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-22	38.93	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	5.8e-20	29.59	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	7.6e-20	45.45	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO.jh102844.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z7AWC5	8.77e-180	38.04	Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_28547 PE=4...	[more]
A5AMN2	9.79e-175	39.51	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003451 PE=4 SV=1	[more]
A0A2Z7CZB6	3.84e-171	37.24	Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_24998 PE=4...	[more]
A0A438IU85	6.51e-170	37.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IVT6	1.23e-169	37.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of MELO.jh102844.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-27	47.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.4e-21	45.45	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
AT4G00980.1	1.6e-12	31.17	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 434..521 e-value: 1.5E-24 score: 87.0
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 237..273 e-value: 5.1E-8 score: 32.7
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 71..142 e-value: 8.1E-7 score: 28.9
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 6..236
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 6..236
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 280..437 e-value: 9.5E-36 score: 124.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 286..385 e-value: 1.7E-17 score: 63.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 283..456 score: 23.315805
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 284..427

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102844.1.t1	MELO.jh102844.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding