MELO.jh102556.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102556.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr10: 24184762 .. 24185511 (+)
RNA-Seq Expression	MELO.jh102556.1
Synteny	MELO.jh102556.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGCCGAACTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCAATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGACATCCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACGAATTCGTTGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTATTCATGGATCTGATGAACAGGGTGTTTAAGGAGTTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTCATTTACTCAAAAACTGAGGCTGAGCACGAGGAGCACTTACACCAAGTTTTGGAGACCCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAGGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCAGTAGATCCCGCAAAGATTGAAGCGGTGACCAACTGGACCCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCAGTTGA

mRNA sequence

ATGGCTCCAGCCGAACTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCAATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGACATCCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACGAATTCGTTGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTATTCATGGATCTGATGAACAGGGTGTTTAAGGAGTTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTCATTTACTCAAAAACTGAGGCTGAGCACGAGGAGCACTTACACCAAGTTTTGGAGACCCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAGGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCAGTAGATCCCGCAAAGATTGAAGCGGTGACCAACTGGACCCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCAGTTGA

Coding sequence (CDS)

ATGGCTCCAGCCGAACTAAAGGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCGCCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCAATGCGCCTTTGTATTGACTACCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTACCCCTTGCCCAGGATTGATGACCTGTTCGATCAGTTGCAGGGAGCCACCGTCTTCTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGACATCCCCAAGACGGCCTTTCGATCGAGGTACGGACATTACGAATTCGTTGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTATTCATGGATCTGATGAACAGGGTGTTTAAGGAGTTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTCATTTACTCAAAAACTGAGGCTGAGCACGAGGAGCACTTACACCAAGTTTTGGAGACCCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAGGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCAGTAGATCCCGCAAAGATTGAAGCGGTGACCAACTGGACCCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCAGTTGA

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTS

Homology

[Close]

BLAST of MELO.jh102556.1 vs. NCBI nr
Match: KAA0066469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 492 bits (1266), Expect = 4.74e-172
Identity = 243/248 (97.98%), Postives = 246/248 (99.19%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKATVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV+SFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVVSFGLT 120

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETL+ANKLYAKFS
Sbjct: 121 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANKLYAKFS 180

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 241 SRIASPLT 248

[Close]

BLAST of MELO.jh102556.1 vs. NCBI nr
Match: KAA0053301.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 499 bits (1284), Expect = 2.11e-169
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 193

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS
Sbjct: 194 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 253

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 254 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 314 SRIASPLT 321

[Close]

BLAST of MELO.jh102556.1 vs. NCBI nr
Match: KAA0046571.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 497 bits (1280), Expect = 1.31e-167
Identity = 246/248 (99.19%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 599 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 658

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRI+DLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 659 YPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 718

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS
Sbjct: 719 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 778

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 779 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 838

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 839 SRIASPLT 846

[Close]

BLAST of MELO.jh102556.1 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 489 bits (1259), Expect = 1.41e-167
Identity = 241/248 (97.18%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNC 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDI++YSKTE EHEEHLHQVLETLRANKLYAKFS
Sbjct: 476 NAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLHQVLETLRANKLYAKFS 535

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDP KIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 536 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 595

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 596 SRIASPLT 603

[Close]

BLAST of MELO.jh102556.1 vs. NCBI nr
Match: TYK22443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 485 bits (1248), Expect = 3.49e-167
Identity = 240/248 (96.77%), Postives = 243/248 (97.98%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M P ELKELKVQLQELLDK FI PSVSPWGAPVLFVKKKDGSMRLCIDYR+LNKVTVKNR
Sbjct: 137 MVPIELKELKVQLQELLDKSFIWPSVSPWGAPVLFVKKKDGSMRLCIDYRKLNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLET+RANKLYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANKLYAKFS 316

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 377 SRIASPLT 384

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-55
Identity = 102/247 (41.30%), Postives = 164/247 (66.40%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSK 186
           APA F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFS 246
           CEF  ++ TFLGHV++ +G+  +P KIEA+  +  P+   EI++FLGL GYYR+F+ +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIASPLT 249
            IA P+T
Sbjct: 461 DIAKPMT 467

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.3e-54
Identity = 99/247 (40.08%), Postives = 158/247 (63.97%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 187
           PA F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 247
           EF  ++  FLGH+V+ +G+  +P K++A+ ++  P+   EIR+FLGL GYYR+F+ +++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IASPLTS 250
           IA P+TS
Sbjct: 461 IAKPMTS 467

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 5.0e-54
Identity = 105/241 (43.57%), Postives = 153/241 (63.49%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 186
              M   F++    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F  
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 RKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 246
            +  FLG+ +  + ++    K  A+ ++  P TV + + FLG+  YYRRF+ + S+IA P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 848

Query: 247 L 248
           +
Sbjct: 850 I 848

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 5.0e-54
Identity = 105/241 (43.57%), Postives = 153/241 (63.49%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF +  G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKCEFWL 186
              M   F++    FV V++DDILI+S++  EH +HL  VLE L+   L  K  KC+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 RKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSRIASP 246
            +  FLG+ +  + ++    K  A+ ++  P TV + + FLG+  YYRRF+ + S+IA P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 874

Query: 247 L 248
           +
Sbjct: 876 I 874

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-52
Identity = 94/247 (38.06%), Postives = 157/247 (63.56%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 127
           +P I+     L  A  F+ +DL SG+HQ+ +++ DIPKTAF +  G YEF+ + FGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 PAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFSKC 187
           PA+F  +++ + +E +     V+IDDI+++S+    H ++L  VL +L    L     K 
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 EFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDFSR 247
            F   +V FLG++V+++G+  DP K+ A++    P++V E++ FLG+  YYR+F++D+++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 248 IASPLTS 250
           +A PLT+
Sbjct: 378 VAKPLTN 384

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL
Match: A0A5A7VMK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 492 bits (1266), Expect = 2.29e-172
Identity = 243/248 (97.98%), Postives = 246/248 (99.19%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKATVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV+SFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVVSFGLT 120

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETL+ANKLYAKFS
Sbjct: 121 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANKLYAKFS 180

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 241 SRIASPLT 248

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL
Match: A0A5A7UIB4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 PE=4 SV=1)

HSP 1 Score: 499 bits (1284), Expect = 1.02e-169
Identity = 247/248 (99.60%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 193

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS
Sbjct: 194 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 253

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 254 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 314 SRIASPLT 321

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ22 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00990 PE=4 SV=1)

HSP 1 Score: 497 bits (1280), Expect = 6.32e-168
Identity = 246/248 (99.19%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 599 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 658

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRI+DLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 659 YPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 718

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS
Sbjct: 719 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 778

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 779 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 838

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 839 SRIASPLT 846

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 489 bits (1259), Expect = 6.85e-168
Identity = 241/248 (97.18%), Postives = 244/248 (98.39%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNC 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDI++YSKTE EHEEHLHQVLETLRANKLYAKFS
Sbjct: 476 NAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLHQVLETLRANKLYAKFS 535

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDP KIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 536 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 595

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 596 SRIASPLT 603

[Close]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL
Match: A0A5D3DFW6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00490 PE=4 SV=1)

HSP 1 Score: 485 bits (1248), Expect = 1.69e-167
Identity = 240/248 (96.77%), Postives = 243/248 (97.98%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M P ELKELKVQLQELLDK FI PSVSPWGAPVLFVKKKDGSMRLCIDYR+LNKVTVKNR
Sbjct: 137 MVPIELKELKVQLQELLDKSFIWPSVSPWGAPVLFVKKKDGSMRLCIDYRKLNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLET+RANKLYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANKLYAKFS 316

Query: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLT 248
           SRIASPLT
Sbjct: 377 SRIASPLT 384

[Close]

BLAST of MELO.jh102556.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-19
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 162 HLHQVLETLRANKLYAKFSKCEFWLRKVTFLG--HVVSSEGVSVDPAKIEAVTNWTRPST 221
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSEIRSFLGLAGYYRRFVEDFSRIASPLT 249
            +E+R FLGL GYYRRFV+++ +I  PLT
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

The following BLAST results are available for this feature:

BLAST of MELO.jh102556.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066469.1	4.74e-172	97.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053301.1	2.11e-169	99.60	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046571.1	1.31e-167	99.19	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040693.1	1.41e-167	97.18	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK22443.1	3.49e-167	96.77	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102556.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.2e-55	41.30	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.3e-54	40.08	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	5.0e-54	43.57	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.0e-54	43.57	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	1.6e-52	38.06	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of MELO.jh102556.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMK1	2.29e-172	97.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=...	[more]
A0A5A7UIB4	1.02e-169	99.60	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 P...	[more]
A0A5A7TZ22	6.32e-168	99.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7TC72	6.85e-168	97.18	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DFW6	1.69e-167	96.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold53...	[more]

BLAST of MELO.jh102556.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-19	47.19	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 1.2E-88 score: 297.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..248
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..248
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 4.19394E-101 score: 289.881
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 1.2E-88 score: 297.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..249 e-value: 2.1E-16 score: 61.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 6.3E-29 score: 101.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 10.536036
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102556.1.t1	MELO.jh102556.1.t1	mRNA