MELO.jh102517.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102517.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pol protein
Location	chr10: 17646841 .. 17647458 (+)
RNA-Seq Expression	MELO.jh102517.1
Synteny	MELO.jh102517.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGATTGGTGTTGGTAAATGCTTGGTGTGCCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCTGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAGAACGTGTCCATGGATTTCATTACAGGGCTACCGAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAGCGCACTTTGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACTTGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGAGAGATTGA

mRNA sequence

ATGAAGAGGATTGGTGTTGGTAAATGCTTGGTGTGCCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCTGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAGAACGTGTCCATGGATTTCATTACAGGGCTACCGAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAGCGCACTTTGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACTTGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGAGAGATTGA

Coding sequence (CDS)

ATGAAGAGGATTGGTGTTGGTAAATGCTTGGTGTGCCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCTGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAGAACGTGTCCATGGATTTCATTACAGGGCTACCGAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAGTCAGCGCACTTTGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACTTGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGAGAGATTGA

Protein sequence

MKRIGVGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGERD

Homology

[Close]

BLAST of MELO.jh102517.1 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 417 bits (1072), Expect = 2.56e-144
Identity = 195/199 (97.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 9   VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 68

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 69  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 128

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 129 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 188

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYGRCCRSPVCWGEVGE+
Sbjct: 189 ALYGRCCRSPVCWGEVGEQ 207

[Close]

BLAST of MELO.jh102517.1 vs. NCBI nr
Match: KAA0025425.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 416 bits (1069), Expect = 1.88e-142
Identity = 194/199 (97.49%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 106 VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 165

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 166 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 225

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 226 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 285

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 286 ALYGKCCRSPVCWGEVGEQ 304

[Close]

BLAST of MELO.jh102517.1 vs. NCBI nr
Match: KAA0051310.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 410 bits (1055), Expect = 1.94e-141
Identity = 191/199 (95.98%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSM+FITGLPRTL+GFTVIWVVVDRLT
Sbjct: 29  VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMNFITGLPRTLRGFTVIWVVVDRLT 88

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWA LY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 89  KSAHFVPGKSTYTASKWAHLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 148

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACAL+FPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 149 FSTAFHPQTDGQTERLNQVLEDMLRACALKFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 208

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 209 ALYGKCCRSPVCWGEVGEQ 227

[Close]

BLAST of MELO.jh102517.1 vs. NCBI nr
Match: KAA0057638.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 410 bits (1053), Expect = 3.92e-141
Identity = 192/199 (96.48%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 29  VNKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 88

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 89  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 148

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FS AFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 149 FSIAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 208

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+ CRSPVCWGEVGE+
Sbjct: 209 ALYGKSCRSPVCWGEVGEQ 227

[Close]

BLAST of MELO.jh102517.1 vs. NCBI nr
Match: KAA0047043.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 415 bits (1066), Expect = 4.27e-141
Identity = 193/199 (96.98%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V +CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 171 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 230

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 231 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 290

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 291 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 350

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 351 ALYGKCCRSPVCWGEVGEQ 369

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 79/187 (42.25%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 9    CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLTKSA 68
            C+ CQ +K+ R +  GLLQPL I E +W ++SMDF+TGLP T     +I VVVDR +K A
Sbjct: 1142 CVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1201

Query: 69   HFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST 128
            HF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+
Sbjct: 1202 HFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSS 1261

Query: 129  AFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY 188
            A HPQTDGQ+ER  Q L  +LRA A     +W  +L  +EF YN++   T+G +PFE   
Sbjct: 1262 ANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDL 1321

Query: 189  GRCCRSP 196
            G    +P
Sbjct: 1322 GYLPNTP 1328

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-36
Identity = 78/187 (41.71%), Postives = 109/187 (58.29%), Query Frame = 0


Query: 9    CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLTKSA 68
            C+ CQ +K+ R +  GLLQPL I E +W ++SMDF+TGLP T     +I VVVDR +K A
Sbjct: 1168 CVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1227

Query: 69   HFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFST 128
            HF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G +   S+
Sbjct: 1228 HFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSS 1287

Query: 129  AFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALY 188
            A HPQTDGQ+ER  Q L  +LRA       +W  +L  +EF YN++   T+G +PFE   
Sbjct: 1288 ANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDL 1347

Query: 189  GRCCRSP 196
            G    +P
Sbjct: 1348 GYLPNTP 1354

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 6    VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
            V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFS 1013

Query: 66   KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
            K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + 
Sbjct: 1014 KMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMK 1073

Query: 126  FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
            FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE
Sbjct: 1074 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1133

Query: 186  ALY 189
             ++
Sbjct: 1134 IVH 1135

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 6    VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
            V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFS 1013

Query: 66   KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
            K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + 
Sbjct: 1014 KMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMK 1073

Query: 126  FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
            FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE
Sbjct: 1074 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1133

Query: 186  ALY 189
             ++
Sbjct: 1134 IVH 1135

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 72/183 (39.34%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 6    VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
            V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFS 1013

Query: 66   KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
            K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + 
Sbjct: 1014 KMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMK 1073

Query: 126  FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
            FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE
Sbjct: 1074 FSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFE 1133

Query: 186  ALY 189
             ++
Sbjct: 1134 IVH 1135

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL
Match: A0A5A7TPA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 PE=4 SV=1)

HSP 1 Score: 417 bits (1072), Expect = 1.24e-144
Identity = 195/199 (97.99%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 9   VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 68

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 69  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 128

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 129 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 188

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYGRCCRSPVCWGEVGE+
Sbjct: 189 ALYGRCCRSPVCWGEVGEQ 207

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL
Match: A0A5A7SLT0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE=4 SV=1)

HSP 1 Score: 416 bits (1069), Expect = 9.08e-143
Identity = 194/199 (97.49%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 106 VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 165

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 166 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 225

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 226 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 285

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 286 ALYGKCCRSPVCWGEVGEQ 304

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL
Match: A0A5A7U810 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00200 PE=4 SV=1)

HSP 1 Score: 410 bits (1055), Expect = 9.42e-142
Identity = 191/199 (95.98%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSM+FITGLPRTL+GFTVIWVVVDRLT
Sbjct: 29  VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMNFITGLPRTLRGFTVIWVVVDRLT 88

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWA LY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 89  KSAHFVPGKSTYTASKWAHLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 148

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACAL+FPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 149 FSTAFHPQTDGQTERLNQVLEDMLRACALKFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 208

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 209 ALYGKCCRSPVCWGEVGEQ 227

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL
Match: A0A5A7UR79 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8628G00010 PE=4 SV=1)

HSP 1 Score: 410 bits (1053), Expect = 1.90e-141
Identity = 192/199 (96.48%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 29  VNKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 88

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 89  KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 148

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FS AFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 149 FSIAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 208

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+ CRSPVCWGEVGE+
Sbjct: 209 ALYGKSCRSPVCWGEVGEQ 227

[Close]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL
Match: A0A5A7TU00 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE=4 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 2.07e-141
Identity = 193/199 (96.98%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 6   VGKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 65
           V +CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLT
Sbjct: 171 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 230

Query: 66  KSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 125
           KSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD
Sbjct: 231 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLD 290

Query: 126 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 185
           FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE
Sbjct: 291 FSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFE 350

Query: 186 ALYGRCCRSPVCWGEVGER 204
           ALYG+CCRSPVCWGEVGE+
Sbjct: 351 ALYGKCCRSPVCWGEVGEQ 369

The following BLAST results are available for this feature:

BLAST of MELO.jh102517.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043401.1	2.56e-144	97.99	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025425.1	1.88e-142	97.49	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051310.1	1.94e-141	95.98	pol protein [Cucumis melo var. makuwa]	[more]
KAA0057638.1	3.92e-141	96.48	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047043.1	4.27e-141	96.98	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102517.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.3e-36	42.25	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.9e-36	41.71	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.1e-34	39.34	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.1e-34	39.34	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.1e-34	39.34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPA9	1.24e-144	97.99	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 ...	[more]
A0A5A7SLT0	9.08e-143	97.49	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00090 PE...	[more]
A0A5A7U810	9.42e-142	95.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00200 PE=...	[more]
A0A5A7UR79	1.90e-141	96.48	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8628G00010 P...	[more]
A0A5A7TU00	2.07e-141	96.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00280 PE...	[more]

BLAST of MELO.jh102517.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 25..201 e-value: 1.1E-47 score: 163.9
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 6..186
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 28..191 score: 18.98317
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 29..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102517.1.t1	MELO.jh102517.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding