MELO.jh102470.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102470.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr10: 8908310 .. 8909215 (-)
RNA-Seq Expression	MELO.jh102470.1
Synteny	MELO.jh102470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACACTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTAGACTTCAGCACGGCGTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAAGACATGCTGCGGGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTCGCCTATAATAACAGCTACCAGGCTACTATCGGTATGGCACCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCTCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGTCCCGAGTTAGTTCAGACCACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCACAAAGCAGACAGAAGAGTTATGCTGATGTGCGACGTAAGGATCTCGAGTTTGAGGTGGGAGACATGGTATTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGATTCGAGAAGAAGGGGAAGCTAAGTCCACGCTTCGTAGAGCCGTTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATGACGTATTCCATGTGTCCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGATTTCGAGCCACTGCGAATCAGCGAGAACTTGAGCAATGAGGAGAAGTCTGTCGAGATCTTGGCAAGGGAAGCCAAGAAGCTTCGTAGTCGAAAAATTTCACTGATCAAAGTTCTTTGGCGGAACCATGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGCGAGCCCTGTACCCCGAGCTGTTCGAGGATTAG

mRNA sequence

ATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACACTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTAGACTTCAGCACGGCGTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAAGACATGCTGCGGGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTCGCCTATAATAACAGCTACCAGGCTACTATCGGTATGGCACCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCTCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGTCCCGAGTTAGTTCAGACCACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCACAAAGCAGACAGAAGAGTTATGCTGATGTGCGACGTAAGGATCTCGAGTTTGAGGTGGGAGACATGGTATTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGATTCGAGAAGAAGGGGAAGCTAAGTCCACGCTTCGTAGAGCCGTTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATGACGTATTCCATGTGTCCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGATTTCGAGCCACTGCGAATCAGCGAGAACTTGAGCAATGAGGAGAAGTCTGTCGAGATCTTGGCAAGGGAAGCCAAGAAGCTTCGTAGTCGAAAAATTTCACTGATCAAAGTTCTTTGGCGGAACCATGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGCGAGCCCTGTACCCCGAGCTGTTCGAGGATTAG

Coding sequence (CDS)

ATGACAGAGATTGTGAGACTACATGGAGTACCCGTATCCATCATTTCAGACAGAGACACTCGTTTCACATCGAAGTTCTGGAAAGGACTTCAACTTGCATTAGGTACGAGGTTAGACTTCAGCACGGCGTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGATTTTGGAAGACATGCTGCGGGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCCCATCTGCATCTGATGGAGTTCGCCTATAATAACAGCTACCAGGCTACTATCGGTATGGCACCGTTTGAGGCTCTGTATGGCAAGTGCTGTAGATCTCCTGTCTGCTGGGGCGAGGTTGGAGAGCAGAGGATGCTAGGTCCCGAGTTAGTTCAGACCACCAATGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCACAAAGCAGACAGAAGAGTTATGCTGATGTGCGACGTAAGGATCTCGAGTTTGAGGTGGGAGACATGGTATTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGATTCGAGAAGAAGGGGAAGCTAAGTCCACGCTTCGTAGAGCCGTTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCATGACGTATTCCATGTGTCCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGATTTCGAGCCACTGCGAATCAGCGAGAACTTGAGCAATGAGGAGAAGTCTGTCGAGATCTTGGCAAGGGAAGCCAAGAAGCTTCGTAGTCGAAAAATTTCACTGATCAAAGTTCTTTGGCGGAACCATGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGCGAGCCCTGTACCCCGAGCTGTTCGAGGATTAG

Protein sequence

MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEKKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLRISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFED

Homology

[Close]

BLAST of MELO.jh102470.1 vs. NCBI nr
Match: KAA0063116.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 572 bits (1473), Expect = 4.46e-205
Identity = 281/301 (93.36%), Postives = 293/301 (97.34%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 1   MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRM 120

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 180

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILERIGPVAYRLALPPSF+AVHDVFH+SMLR+YVADPTHVVDFEPL
Sbjct: 181 KKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPL 240

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+LARE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 241 QISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 300

[Close]

BLAST of MELO.jh102470.1 vs. NCBI nr
Match: KAA0040164.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 565 bits (1456), Expect = 1.74e-202
Identity = 279/301 (92.69%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 1   MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQ TIGMAPFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQDTIGMAPFEALYGKCCRSPVCWGEVGEQRM 120

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKS ADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSDADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 180

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILERIGPVAYRLALPPSF+AVHDVFH+SMLR+YVADPTHVVDFEPL
Sbjct: 181 KKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPL 240

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+L RE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 241 QISENLSYEEQPVEVLVREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 300

[Close]

BLAST of MELO.jh102470.1 vs. NCBI nr
Match: TYK11711.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 562 bits (1449), Expect = 1.10e-200
Identity = 281/301 (93.36%), Postives = 289/301 (96.01%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           M EIVRLHGVPVSIISDRDTRFTSKFWKGLQLAL TRLDFST FHPQTDGQ +RLNQILE
Sbjct: 47  MIEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALDTRLDFSTTFHPQTDGQIKRLNQILE 106

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVL+F GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP+CWGEVGEQRM
Sbjct: 107 DMLRACVLKFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRM 166

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LG ELV+TTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE
Sbjct: 167 LGLELVETTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 226

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILER GPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL
Sbjct: 227 KKGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 286

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VEILARE KKLRSR+ISL+KVLWRNHGVEEATWEREEDMRALY ELFE
Sbjct: 287 QISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNHGVEEATWEREEDMRALYLELFE 346

[Close]

BLAST of MELO.jh102470.1 vs. NCBI nr
Match: KAA0067014.1 (pol protein [Cucumis melo var. makuwa] >TYK26250.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 565 bits (1456), Expect = 1.35e-200
Identity = 281/301 (93.36%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGV VSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQT+GQTERLNQ+LE
Sbjct: 120 MTEIVRLHGVSVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTEGQTERLNQVLE 179

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP+CWGEVGEQRM
Sbjct: 180 DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRM 239

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTN AIQKIRARMLTAQSR+KSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE
Sbjct: 240 LGPELVQTTNVAIQKIRARMLTAQSRKKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 299

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFVEPFEILERIG VAYRLALPP FSAVHDVFHVSMLRRYV +PTHVVDFE L
Sbjct: 300 KKGKLSPRFVEPFEILERIGLVAYRLALPPFFSAVHDVFHVSMLRRYVTEPTHVVDFEQL 359

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VEILARE KKLRSR+ISL+KVLWRNHGVEEATWEREEDMRA YPELFE
Sbjct: 360 QISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFE 419

[Close]

BLAST of MELO.jh102470.1 vs. NCBI nr
Match: KAA0032302.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 562 bits (1449), Expect = 1.09e-199
Identity = 277/301 (92.03%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 110 MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 169

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLR CVLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 170 DMLRVCVLEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 229

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 230 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 289

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV  FEILE+IGPVAYRLALPPSF+AVH+VFH+SMLR+YVADPTHVVDFEPL
Sbjct: 290 KKGKLSPRFVGLFEILEQIGPVAYRLALPPSFAAVHEVFHISMLRKYVADPTHVVDFEPL 349

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+LARE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 350 QISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 409

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 77/227 (33.92%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 4    IVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDML 63
            ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLG 123
            R        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEK 183
             E  Q T    Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HK 1216

Query: 184  KGKLSPRFVEPFEILERIGPVAYRLALPPSFSAV-HDVFHVSMLRRY 228
              KL+P F  PF +L++ GP  Y L LP S   +    FHVS L +Y
Sbjct: 1217 SNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 77/227 (33.92%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 4    IVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDML 63
            ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLG 123
            R        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEK 183
             E  Q T    Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HK 1216

Query: 184  KGKLSPRFVEPFEILERIGPVAYRLALPPSFSAV-HDVFHVSMLRRY 228
              KL+P F  PF +L++ GP  Y L LP S   +    FHVS L +Y
Sbjct: 1217 SNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 77/227 (33.92%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 4    IVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDML 63
            ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLG 123
            R        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEK 183
             E  Q T    Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HK 1216

Query: 184  KGKLSPRFVEPFEILERIGPVAYRLALPPSFSAV-HDVFHVSMLRRY 228
              KL+P F  PF +L++ GP  Y L LP S   +    FHVS L +Y
Sbjct: 1217 SNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 77/227 (33.92%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 4    IVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDML 63
            ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLG 123
            R        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEK 183
             E  Q T    Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HK 1216

Query: 184  KGKLSPRFVEPFEILERIGPVAYRLALPPSFSAV-HDVFHVSMLRRY 228
              KL+P F  PF +L++ GP  Y L LP S   +    FHVS L +Y
Sbjct: 1217 SNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 77/227 (33.92%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 4    IVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDML 63
            ++   G P  II+D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRMLG 123
            R        +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDL-EFEVGDMVFLKVAPMKGVLRFEK 183
             E  Q T    Q ++  + T   + K Y D++ +++ EF+ GD+V +K     G L   K
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HK 1216

Query: 184  KGKLSPRFVEPFEILERIGPVAYRLALPPSFSAV-HDVFHVSMLRRY 228
              KL+P F  PF +L++ GP  Y L LP S   +    FHVS L +Y
Sbjct: 1217 SNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL
Match: A0A5A7V9J8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17551G00010 PE=4 SV=1)

HSP 1 Score: 572 bits (1473), Expect = 2.16e-205
Identity = 281/301 (93.36%), Postives = 293/301 (97.34%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 1   MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRM 120

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 180

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILERIGPVAYRLALPPSF+AVHDVFH+SMLR+YVADPTHVVDFEPL
Sbjct: 181 KKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPL 240

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+LARE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 241 QISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 300

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL
Match: A0A5A7T9L9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24213G00010 PE=4 SV=1)

HSP 1 Score: 565 bits (1456), Expect = 8.43e-203
Identity = 279/301 (92.69%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 1   MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQ TIGMAPFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQDTIGMAPFEALYGKCCRSPVCWGEVGEQRM 120

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKS ADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSDADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 180

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILERIGPVAYRLALPPSF+AVHDVFH+SMLR+YVADPTHVVDFEPL
Sbjct: 181 KKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPL 240

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+L RE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 241 QISENLSYEEQPVEVLVREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 300

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL
Match: A0A5D3CIQ3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE=4 SV=1)

HSP 1 Score: 562 bits (1449), Expect = 5.35e-201
Identity = 281/301 (93.36%), Postives = 289/301 (96.01%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           M EIVRLHGVPVSIISDRDTRFTSKFWKGLQLAL TRLDFST FHPQTDGQ +RLNQILE
Sbjct: 47  MIEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALDTRLDFSTTFHPQTDGQIKRLNQILE 106

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVL+F GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP+CWGEVGEQRM
Sbjct: 107 DMLRACVLKFLGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRM 166

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LG ELV+TTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE
Sbjct: 167 LGLELVETTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 226

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV PFEILER GPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL
Sbjct: 227 KKGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 286

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VEILARE KKLRSR+ISL+KVLWRNHGVEEATWEREEDMRALY ELFE
Sbjct: 287 QISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNHGVEEATWEREEDMRALYLELFE 346

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL
Match: A0A5A7VI28 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00130 PE=4 SV=1)

HSP 1 Score: 565 bits (1456), Expect = 6.52e-201
Identity = 281/301 (93.36%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGV VSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQT+GQTERLNQ+LE
Sbjct: 120 MTEIVRLHGVSVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTEGQTERLNQVLE 179

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP+CWGEVGEQRM
Sbjct: 180 DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPICWGEVGEQRM 239

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTN AIQKIRARMLTAQSR+KSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE
Sbjct: 240 LGPELVQTTNVAIQKIRARMLTAQSRKKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 299

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFVEPFEILERIG VAYRLALPP FSAVHDVFHVSMLRRYV +PTHVVDFE L
Sbjct: 300 KKGKLSPRFVEPFEILERIGLVAYRLALPPFFSAVHDVFHVSMLRRYVTEPTHVVDFEQL 359

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VEILARE KKLRSR+ISL+KVLWRNHGVEEATWEREEDMRA YPELFE
Sbjct: 360 QISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNHGVEEATWEREEDMRAQYPELFE 419

[Close]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL
Match: A0A5A7SMN8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001520 PE=4 SV=1)

HSP 1 Score: 562 bits (1449), Expect = 5.29e-200
Identity = 277/301 (92.03%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MTEIVRLHGVPVSIISDRDTRFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 60
           MTEIVRLHGVPVSIISDRD RFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE
Sbjct: 110 MTEIVRLHGVPVSIISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILE 169

Query: 61  DMLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 120
           DMLR CVLEF GSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM
Sbjct: 170 DMLRVCVLEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRM 229

Query: 121 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFE 180
           LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRF 
Sbjct: 230 LGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFA 289

Query: 181 KKGKLSPRFVEPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPL 240
           KKGKLSPRFV  FEILE+IGPVAYRLALPPSF+AVH+VFH+SMLR+YVADPTHVVDFEPL
Sbjct: 290 KKGKLSPRFVGLFEILEQIGPVAYRLALPPSFAAVHEVFHISMLRKYVADPTHVVDFEPL 349

Query: 241 RISENLSNEEKSVEILAREAKKLRSRKISLIKVLWRNHGVEEATWEREEDMRALYPELFE 300
           +ISENLS EE+ VE+LARE KKLRSR+I L+K+LW+NHGVEEATWE+EEDMRA YPELFE
Sbjct: 350 QISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFE 409

The following BLAST results are available for this feature:

BLAST of MELO.jh102470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063116.1	4.46e-205	93.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040164.1	1.74e-202	92.69	pol protein [Cucumis melo var. makuwa]	[more]
TYK11711.1	1.10e-200	93.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0067014.1	1.35e-200	93.36	pol protein [Cucumis melo var. makuwa] >TYK26250.1 pol protein [Cucumis melo var...	[more]
KAA0032302.1	1.09e-199	92.03	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.1e-26	33.92	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.1e-26	33.92	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.1e-26	33.92	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.1e-26	33.92	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.1e-26	33.92	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9J8	2.16e-205	93.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17551G00010 ...	[more]
A0A5A7T9L9	8.43e-203	92.69	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24213G00010 ...	[more]
A0A5D3CIQ3	5.35e-201	93.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE...	[more]
A0A5A7VI28	6.52e-201	93.36	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00130 PE=...	[more]
A0A5A7SMN8	5.29e-200	92.03	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001520 P...	[more]

BLAST of MELO.jh102470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 246..266
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 59..293
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 59..293
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..146 e-value: 1.1E-32 score: 115.0
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..105 score: 15.292405
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102470.1.t1	MELO.jh102470.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding