MELO.jh102181.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102181.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr08: 17006707 .. 17007930 (-)
RNA-Seq Expression	MELO.jh102181.1
Synteny	MELO.jh102181.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTAGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCTCGAGATGATAGCAACTGAGGTGGCCAGAGCTGATGAGTTTGTTAGAGGCCTCAGGCTAGACATTCAGGGTTTGGTTCGAGCCTTCCGACCTGCCACTCATGCTGATGCACTGTGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCCAAGGTTGCAGGTAAAGGTTCGACCTCAGGACAGCTAAGGAAGGTTGAGTCTCGCCACTTCCAGCAGAAACCTTTTGAGGCAGGGGAAGCTACCAGAAGGAAGCCGTTGTGTACCACTTGCGGGAAGCACCATCTGGGCCGTCATTTATTTGGGACCAGGATTTGCTTCAAGTGTAGGCAAGAGGGGCATACAGCTGATAGATGCCCGATGAAACTTACCGGGAATGCACAGAATCAGGGAGCAGATGCTCCACATCAGGGTAAAGTCTTTGCTACCAATAAGATAGAGGCTGAGAGTACAGGCACGGTGGTGACAGGTACGCTTCCAGTGTTGGGGCATTATGCCCTAGTTTTGTTTGATTCGGGTTCGTCACATTCCTTTATCTCTTCTGCATTTGTGGTGTATGCCCGCTTAGAGGTAGAGCCCCTACACCATGTGTTATCAGTATCTACTCCTTCTGGGGAGTATATGTTGTCAAAAGAAAAGGTGAAAGGATGTCAGATTGAGATAACAGGTCATGTGATTGAAGTAACGTTGTTAGTCCTGGACATGCTCGACTTCAATGTAATTCTGGGTATGGATTGGCTAGCTGCTAACCATGCTAGCATAGATTGTTTCCGTAAGGAGGTAGCGTTTAACTCTCCCTCGATGACCAGTTTTAAATTTAAGGGAGAAGGATCAAGGTCGTTACCTAAGGTAATCTCAGCCATGAGGGCCAGCAAACTGCTTAGTTAGGGTACTTGGAGTATCTTAGTGAGCGTGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATCAGAACCAGTGGTAAGGGACTATCAAGATGTCTTTCTTGAAGAATTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGATGGAGCCGGACACGGTTTCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAAGAACTGAAAGTGCAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTAG

mRNA sequence

ATGACAGTAGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCTCGAGATGATAGCAACTGAGGTGGCCAGAGCTGATGAGTTTGTTAGAGGCCTCAGGCTAGACATTCAGGGTTTGGTTCGAGCCTTCCGACCTGCCACTCATGCTGATGCACTGTGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCCAAGGTTGCAGGTAAAGGTTCGACCTCAGGACAGCTAAGGAAGGTTGAGTCTCGCCACTTCCAGCAGAAACCTTTTGAGGCAGGGGAAGCTACCAGAAGGAAGCCGTTGTGTACCACTTGCGGGAAGCACCATCTGGGCCGTCATTTATTTGGGACCAGGATTTGCTTCAAGTGTAGGCAAGAGGGGCATACAGCTGATAGATGCCCGATGAAACTTACCGGGAATGCACAGAATCAGGGAGCAGATGCTCCACATCAGGGTAAAGTCTTTGCTACCAATAAGATAGAGGCTGAGAGTACAGGCACGGTGGTGACAGGTACGCTTCCAGTGTTGGGGCATTATGCCCTAGTTTTGTTTGATTCGGGTTCGTCACATTCCTTTATCTCTTCTGCATTTGTGGTGTATGCCCGCTTAGAGGTAGAGCCCCTACACCATGTGTTATCAGTATCTACTCCTTCTGGGGAGTATATGTTGTCAAAAGAAAAGGTGAAAGGATGTCAGATTGAGATAACAGGTCATGTGATTGAAGTAACGTTGTTAGTCCTGGACATGCTCGACTTCAATGTAATTCTGGGTATGGATTGGCTAGCTGCTAACCATGCTAGCATAGATTGTTTCCGTAAGGAGGGTACTTGGAGTATCTTAGTGAGCGTGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATCAGAACCAGTGGTAAGGGACTATCAAGATGTCTTTCTTGAAGAATTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGATGGAGCCGGACACGGTTTCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAAGAACTGAAAGTGCAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTAG

Coding sequence (CDS)

ATGACAGTAGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCTCGAGATGATAGCAACTGAGGTGGCCAGAGCTGATGAGTTTGTTAGAGGCCTCAGGCTAGACATTCAGGGTTTGGTTCGAGCCTTCCGACCTGCCACTCATGCTGATGCACTGTGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCCAAGGTTGCAGGTAAAGGTTCGACCTCAGGACAGCTAAGGAAGGTTGAGTCTCGCCACTTCCAGCAGAAACCTTTTGAGGCAGGGGAAGCTACCAGAAGGAAGCCGTTGTGTACCACTTGCGGGAAGCACCATCTGGGCCGTCATTTATTTGGGACCAGGATTTGCTTCAAGTGTAGGCAAGAGGGGCATACAGCTGATAGATGCCCGATGAAACTTACCGGGAATGCACAGAATCAGGGAGCAGATGCTCCACATCAGGGTAAAGTCTTTGCTACCAATAAGATAGAGGCTGAGAGTACAGGCACGGTGGTGACAGGTACGCTTCCAGTGTTGGGGCATTATGCCCTAGTTTTGTTTGATTCGGGTTCGTCACATTCCTTTATCTCTTCTGCATTTGTGGTGTATGCCCGCTTAGAGGTAGAGCCCCTACACCATGTGTTATCAGTATCTACTCCTTCTGGGGAGTATATGTTGTCAAAAGAAAAGGTGAAAGGATGTCAGATTGAGATAACAGGTCATGTGATTGAAGTAACGTTGTTAGTCCTGGACATGCTCGACTTCAATGTAATTCTGGGTATGGATTGGCTAGCTGCTAACCATGCTAGCATAGATTGTTTCCGTAAGGAGGGTACTTGGAGTATCTTAGTGAGCGTGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATCAGAACCAGTGGTAAGGGACTATCAAGATGTCTTTCTTGAAGAATTTCCAGGGTTACCTCCTCACAGAGAGATTGAGTTTGCCATAGAGATGGAGCCGGACACGGTTTCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAAGAACTGAAAGTGCAGTTACAGGAGTTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTAG

Protein sequence

MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVDLSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLFGTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEITGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTWSILVSVVDTREVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

Homology

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BLAST of MELO.jh102181.1 vs. NCBI nr
Match: KAA0067835.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 700 bits (1807), Expect = 1.77e-253
Identity = 359/380 (94.47%), Postives = 362/380 (95.26%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD
Sbjct: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF
Sbjct: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTW------SILVSVVDTR-- 300
           TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE  +      S       +R  
Sbjct: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEVAFNSPSMTSFKFKGEGSRSL 300

Query: 301 -EVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360
            +VDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE
Sbjct: 301 PKVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360

Query: 361 LKVQLQELLDKGFIRPSVSP 371
           LKVQLQELLDKGFIRPSVSP
Sbjct: 361 LKVQLQELLDKGFIRPSVSP 380

[Close]

BLAST of MELO.jh102181.1 vs. NCBI nr
Match: KAA0038866.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 693 bits (1788), Expect = 1.99e-238
Identity = 355/376 (94.41%), Postives = 358/376 (95.21%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD
Sbjct: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF
Sbjct: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTW------SILVSVVDTR-- 300
           TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE  +      S       +R  
Sbjct: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEVAFNSPSMTSFKFKGEGSRSL 300

Query: 301 -EVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360
            +VDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE
Sbjct: 301 PKVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360

Query: 361 LKVQLQELLDKGFIRP 367
           LKVQLQELLDKGFIRP
Sbjct: 361 LKVQLQELLDKGFIRP 376

[Close]

BLAST of MELO.jh102181.1 vs. NCBI nr
Match: TYK11041.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 626 bits (1615), Expect = 1.04e-224
Identity = 324/371 (87.33%), Postives = 330/371 (88.95%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           M VEQYDAEFDMLSRFALEMIATEVARADEFVRGL LDIQGLVRAFRP THADAL LAVD
Sbjct: 1   MIVEQYDAEFDMLSRFALEMIATEVARADEFVRGLMLDIQGLVRAFRPTTHADALRLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAG+G TS QLRKVESRHFQQKPFE GE  R KPLCTTCGKHHLGR LF
Sbjct: 61  LSLQERANSSKVAGRGLTSEQLRKVESRHFQQKPFEVGEPARGKPLCTTCGKHHLGRCLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPM+LTGNAQNQGA APHQGKVFATNKIEAE  GTVV GTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMRLTGNAQNQGAGAPHQGKVFATNKIEAERAGTVVIGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVV+ARLEVEPLHHVLSVSTPSGEYML KEKVKGCQI+I
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVHARLEVEPLHHVLSVSTPSGEYMLLKEKVKGCQIKI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTWSILVSVVDTREVDVSLSS 300
           TGHVIEVTLLVLDMLDFN                     GTWSILVSVVDTREVDVSLSS
Sbjct: 241 TGHVIEVTLLVLDMLDFN---------------------GTWSILVSVVDTREVDVSLSS 300

Query: 301 EPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELL 360
           EPV RDYQDVF EE PGLPPHR+IEFAIE+EPDTV ISRAPYRMAPAELKELKVQLQELL
Sbjct: 301 EPVARDYQDVFPEELPGLPPHRDIEFAIELEPDTVPISRAPYRMAPAELKELKVQLQELL 350

Query: 361 DKGFIRPSVSP 371
           DKGFIRPSVSP
Sbjct: 361 DKGFIRPSVSP 350

[Close]

BLAST of MELO.jh102181.1 vs. NCBI nr
Match: KAA0049635.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 630 bits (1625), Expect = 2.17e-221
Identity = 331/423 (78.25%), Postives = 343/423 (81.09%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDA+FDMLSRFA EMIATE ARAD+FVRGLRLDIQGLVRAFRPATHADAL LAVD
Sbjct: 212 MTVEQYDADFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 271

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVES----------------RHFQQKPFEAGEATRRK 120
           LSLQERANSSK AG+GSTSGQ RK E                 RHFQQKPFEAGEA R K
Sbjct: 272 LSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRHFQQKPFEAGEAARGK 331

Query: 121 PLCTTCGKHHLGRHLFGTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNK 180
           PLCTTCGKHHLGR LFGTR CFKCRQEGHTADRCP++LTGNAQNQGADAPHQG+VFATNK
Sbjct: 332 PLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGADAPHQGRVFATNK 391

Query: 181 IEAESTGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSG 240
            EAE  GTVVTGTLPVLGHYALVLFDSGSSH FISSAFV +ARLEVEPLHHVLSVSTPS 
Sbjct: 392 TEAEKAGTVVTGTLPVLGHYALVLFDSGSSHFFISSAFVWHARLEVEPLHHVLSVSTPSR 451

Query: 241 EYMLSKEKVKGCQIEITGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE----- 300
           E MLSKE+VK CQIEI GHVIEVTLLVLDMLDF+VILGMDWLAANHASIDC RKE     
Sbjct: 452 ECMLSKERVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP 511

Query: 301 -------------------------------GTWSILVSVVDTREVDVSLSSEPVVRDYQ 360
                                          GTW IL SVVDTREVDVSLSSEPVVRDY 
Sbjct: 512 PSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYP 571

Query: 361 DVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELLDKGFIRPS 371
           DVF EE PGLPPHRE+EF+IE+EP TV ISRAPYRMAPAELKELKVQLQELLDKGFIRPS
Sbjct: 572 DVFPEELPGLPPHREVEFSIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS 631

[Close]

BLAST of MELO.jh102181.1 vs. NCBI nr
Match: KAA0033513.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 630 bits (1625), Expect = 1.52e-219
Identity = 331/423 (78.25%), Postives = 342/423 (80.85%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQY+AEFDMLSRFA EMIATE ARAD+FVRGLRLDIQGLVRAFRPATHADAL LAVD
Sbjct: 170 MTVEQYEAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 229

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVES----------------RHFQQKPFEAGEATRRK 120
           LSLQERANSSK  G+GSTSGQ RK E                 R FQQKPFEAG+ TR K
Sbjct: 230 LSLQERANSSKTVGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQQKPFEAGDTTRGK 289

Query: 121 PLCTTCGKHHLGRHLFGTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNK 180
           PLCTTCGKHHLGR LFGTR CFKCRQEGHTADRCP +LTGNAQNQGA APHQG+VFATNK
Sbjct: 290 PLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPFRLTGNAQNQGASAPHQGRVFATNK 349

Query: 181 IEAESTGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSG 240
           IEAE  GTVVTGTLPVLGHYALVLFDSGSSHSFISSAFV++ARLEVEPLHHVLSVSTPSG
Sbjct: 350 IEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVLHARLEVEPLHHVLSVSTPSG 409

Query: 241 EYMLSKEKVKGCQIEITGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE----- 300
           E MLSKEKVK CQIEI GHVIEVTLLVLDMLDF+VILGMDWLAANHASIDC RKE     
Sbjct: 410 ECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP 469

Query: 301 -------------------------------GTWSILVSVVDTREVDVSLSSEPVVRDYQ 360
                                          GTW IL SVVDTREVDVSL SEPVVRDY 
Sbjct: 470 PSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLLSEPVVRDYP 529

Query: 361 DVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELLDKGFIRPS 371
           DVF EE PGLPPHRE+EFAIE+EP TV ISRAPYRMAPAELKELKVQLQELLDKGFIRPS
Sbjct: 530 DVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS 589

[Close]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL
Match: A0A5A7VQ62 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00430 PE=4 SV=1)

HSP 1 Score: 700 bits (1807), Expect = 8.59e-254
Identity = 359/380 (94.47%), Postives = 362/380 (95.26%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD
Sbjct: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF
Sbjct: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTW------SILVSVVDTR-- 300
           TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE  +      S       +R  
Sbjct: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEVAFNSPSMTSFKFKGEGSRSL 300

Query: 301 -EVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360
            +VDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE
Sbjct: 301 PKVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360

Query: 361 LKVQLQELLDKGFIRPSVSP 371
           LKVQLQELLDKGFIRPSVSP
Sbjct: 361 LKVQLQELLDKGFIRPSVSP 380

[Close]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL
Match: A0A5A7T9U4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00170 PE=4 SV=1)

HSP 1 Score: 693 bits (1788), Expect = 9.64e-239
Identity = 355/376 (94.41%), Postives = 358/376 (95.21%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD
Sbjct: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF
Sbjct: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTW------SILVSVVDTR-- 300
           TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE  +      S       +R  
Sbjct: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEVAFNSPSMTSFKFKGEGSRSL 300

Query: 301 -EVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360
            +VDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE
Sbjct: 301 PKVDVSLSSEPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKE 360

Query: 361 LKVQLQELLDKGFIRP 367
           LKVQLQELLDKGFIRP
Sbjct: 361 LKVQLQELLDKGFIRP 376

[Close]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL
Match: A0A5D3CGW0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00170 PE=4 SV=1)

HSP 1 Score: 626 bits (1615), Expect = 5.04e-225
Identity = 324/371 (87.33%), Postives = 330/371 (88.95%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           M VEQYDAEFDMLSRFALEMIATEVARADEFVRGL LDIQGLVRAFRP THADAL LAVD
Sbjct: 1   MIVEQYDAEFDMLSRFALEMIATEVARADEFVRGLMLDIQGLVRAFRPTTHADALRLAVD 60

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVESRHFQQKPFEAGEATRRKPLCTTCGKHHLGRHLF 120
           LSLQERANSSKVAG+G TS QLRKVESRHFQQKPFE GE  R KPLCTTCGKHHLGR LF
Sbjct: 61  LSLQERANSSKVAGRGLTSEQLRKVESRHFQQKPFEVGEPARGKPLCTTCGKHHLGRCLF 120

Query: 121 GTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNKIEAESTGTVVTGTLPV 180
           GTRICFKCRQEGHTADRCPM+LTGNAQNQGA APHQGKVFATNKIEAE  GTVV GTLPV
Sbjct: 121 GTRICFKCRQEGHTADRCPMRLTGNAQNQGAGAPHQGKVFATNKIEAERAGTVVIGTLPV 180

Query: 181 LGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSGEYMLSKEKVKGCQIEI 240
           LGHYALVLFDSGSSHSFISSAFVV+ARLEVEPLHHVLSVSTPSGEYML KEKVKGCQI+I
Sbjct: 181 LGHYALVLFDSGSSHSFISSAFVVHARLEVEPLHHVLSVSTPSGEYMLLKEKVKGCQIKI 240

Query: 241 TGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKEGTWSILVSVVDTREVDVSLSS 300
           TGHVIEVTLLVLDMLDFN                     GTWSILVSVVDTREVDVSLSS
Sbjct: 241 TGHVIEVTLLVLDMLDFN---------------------GTWSILVSVVDTREVDVSLSS 300

Query: 301 EPVVRDYQDVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELL 360
           EPV RDYQDVF EE PGLPPHR+IEFAIE+EPDTV ISRAPYRMAPAELKELKVQLQELL
Sbjct: 301 EPVARDYQDVFPEELPGLPPHRDIEFAIELEPDTVPISRAPYRMAPAELKELKVQLQELL 350

Query: 361 DKGFIRPSVSP 371
           DKGFIRPSVSP
Sbjct: 361 DKGFIRPSVSP 350

[Close]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL
Match: A0A5A7U7Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G001000 PE=4 SV=1)

HSP 1 Score: 630 bits (1625), Expect = 1.05e-221
Identity = 331/423 (78.25%), Postives = 343/423 (81.09%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQYDA+FDMLSRFA EMIATE ARAD+FVRGLRLDIQGLVRAFRPATHADAL LAVD
Sbjct: 212 MTVEQYDADFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 271

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVES----------------RHFQQKPFEAGEATRRK 120
           LSLQERANSSK AG+GSTSGQ RK E                 RHFQQKPFEAGEA R K
Sbjct: 272 LSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRHFQQKPFEAGEAARGK 331

Query: 121 PLCTTCGKHHLGRHLFGTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNK 180
           PLCTTCGKHHLGR LFGTR CFKCRQEGHTADRCP++LTGNAQNQGADAPHQG+VFATNK
Sbjct: 332 PLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNAQNQGADAPHQGRVFATNK 391

Query: 181 IEAESTGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSG 240
            EAE  GTVVTGTLPVLGHYALVLFDSGSSH FISSAFV +ARLEVEPLHHVLSVSTPS 
Sbjct: 392 TEAEKAGTVVTGTLPVLGHYALVLFDSGSSHFFISSAFVWHARLEVEPLHHVLSVSTPSR 451

Query: 241 EYMLSKEKVKGCQIEITGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE----- 300
           E MLSKE+VK CQIEI GHVIEVTLLVLDMLDF+VILGMDWLAANHASIDC RKE     
Sbjct: 452 ECMLSKERVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP 511

Query: 301 -------------------------------GTWSILVSVVDTREVDVSLSSEPVVRDYQ 360
                                          GTW IL SVVDTREVDVSLSSEPVVRDY 
Sbjct: 512 PSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLSSEPVVRDYP 571

Query: 361 DVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELLDKGFIRPS 371
           DVF EE PGLPPHRE+EF+IE+EP TV ISRAPYRMAPAELKELKVQLQELLDKGFIRPS
Sbjct: 572 DVFPEELPGLPPHREVEFSIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS 631

[Close]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL
Match: A0A5A7SSS7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00560 PE=4 SV=1)

HSP 1 Score: 630 bits (1625), Expect = 7.38e-220
Identity = 331/423 (78.25%), Postives = 342/423 (80.85%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFALEMIATEVARADEFVRGLRLDIQGLVRAFRPATHADALCLAVD 60
           MTVEQY+AEFDMLSRFA EMIATE ARAD+FVRGLRLDIQGLVRAFRPATHADAL LAVD
Sbjct: 170 MTVEQYEAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 229

Query: 61  LSLQERANSSKVAGKGSTSGQLRKVES----------------RHFQQKPFEAGEATRRK 120
           LSLQERANSSK  G+GSTSGQ RK E                 R FQQKPFEAG+ TR K
Sbjct: 230 LSLQERANSSKTVGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRRFQQKPFEAGDTTRGK 289

Query: 121 PLCTTCGKHHLGRHLFGTRICFKCRQEGHTADRCPMKLTGNAQNQGADAPHQGKVFATNK 180
           PLCTTCGKHHLGR LFGTR CFKCRQEGHTADRCP +LTGNAQNQGA APHQG+VFATNK
Sbjct: 290 PLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPFRLTGNAQNQGASAPHQGRVFATNK 349

Query: 181 IEAESTGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVVYARLEVEPLHHVLSVSTPSG 240
           IEAE  GTVVTGTLPVLGHYALVLFDSGSSHSFISSAFV++ARLEVEPLHHVLSVSTPSG
Sbjct: 350 IEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVLHARLEVEPLHHVLSVSTPSG 409

Query: 241 EYMLSKEKVKGCQIEITGHVIEVTLLVLDMLDFNVILGMDWLAANHASIDCFRKE----- 300
           E MLSKEKVK CQIEI GHVIEVTLLVLDMLDF+VILGMDWLAANHASIDC RKE     
Sbjct: 410 ECMLSKEKVKACQIEIAGHVIEVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNP 469

Query: 301 -------------------------------GTWSILVSVVDTREVDVSLSSEPVVRDYQ 360
                                          GTW IL SVVDTREVDVSL SEPVVRDY 
Sbjct: 470 PSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREVDVSLLSEPVVRDYP 529

Query: 361 DVFLEEFPGLPPHREIEFAIEMEPDTVSISRAPYRMAPAELKELKVQLQELLDKGFIRPS 371
           DVF EE PGLPPHRE+EFAIE+EP TV ISRAPYRMAPAELKELKVQLQELLDKGFIRPS
Sbjct: 530 DVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPS 589

The following BLAST results are available for this feature:

BLAST of MELO.jh102181.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067835.1	1.77e-253	94.47	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038866.1	1.99e-238	94.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK11041.1	1.04e-224	87.33	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0049635.1	2.17e-221	78.25	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033513.1	1.52e-219	78.25	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102181.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQ62	8.59e-254	94.47	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7T9U4	9.64e-239	94.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5D3CGW0	5.04e-225	87.33	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U7Q0	1.05e-221	78.25	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7SSS7	7.38e-220	78.25	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of MELO.jh102181.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 177..293 e-value: 5.5E-19 score: 70.2
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 175..274
None	No IPR available	PFAM	PF08284	RVP_2	coord: 156..279 e-value: 2.1E-38 score: 131.2
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 317..371 e-value: 6.3E-11 score: 44.4
None	No IPR available	GENE3D	4.10.60.10		coord: 121..173 e-value: 3.5E-5 score: 26.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..95
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 175..278 coord: 287..371
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 287..371
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 175..278
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 177..267 e-value: 3.73821E-11 score: 56.9612
IPR001969	Aspartic peptidase, active site	PROSITE	PS00141	ASP_PROTEASE	coord: 187..198
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 125..139 score: 9.438442
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 120..144
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 303..371

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102181.1.t1	MELO.jh102181.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding