MELO.jh101681.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101681.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Gag/pol protein
Location	chr05: 17680270 .. 17681963 (+)
RNA-Seq Expression	MELO.jh101681.1
Synteny	MELO.jh101681.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACAATGATGGTGCCATCGATGAGGCTAATCAGGTTAGTTTTATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTTCAAACAAATGCATCCCTGAACAAGATAGAGTTTAATCTAACAACCCTTCTTAATGAGCTCCAGCGATTCCAGACCATTACCATAGGTAAAGGAAAACAAGTGGAAGCAAATGTTGCTACTACAAAAAGAAAATTTTCAAGAGTATCATCCTCTAAAAATAAAACTAGACTCTCAAAACCAAAACCTCAAATAAAAAAGAAGGGAAAGGGGAAGACTCCCAAACAAAACAAGGGAATGATAGCTGCAGAAAAAGGTAAATGTTACCACTGTGGCCAAAACGGGCACTGGTTGAGAAATTGCCCTAAGTACCTTGTAGAGAAAAAAGTAGAGAAGAAAGCATAAGGTAAATATGATTTACTAGTTGTCGAAACATGTTTGGTGGAATATGAAAATTCAACCTAGATATTAGATTCAGGAGCCACTGATCATATTTGCTTCTCATTTCATGAAAATAGTTATTGGAAAAGGCTTTCAAAAGGCGAGATCACTCTCAAGGTTGGAACAGGAGAGATGGTTTCAGCTGAAGCAGTGAGAGACTTAAAGTTGTTTTTTGGAAATAGATATATCATACTCAAGAATGTCTTGTATGTACAACAAATGAAAAGAAATTTAATATATATTTCTTGTATTTTAGAACATATGTATTAAATATCTTTCAAAATTAATGAAGCGTTCATTTTCTATAAAGGTATTCCGATCTGCCCTGCCATACATGAAAACAACTTATATAAGTTAAGACCAACACAAGCAAAATTTGTCTTAAATACTGAAATGTTTAGAACAGTCGAAACTTAGAATAAAAGACAAAAGGTTTCTTTTAATGCCTATTTATGGCACTTGAGTCTTGGTCACGTAAATCTCAATAGGATTGAAAGATTAGTTAAAAGTGGACTTCTAAGTAAGTTAGAAGATAACTCTTTTCCTCCTTGTGAATCTTGTCTGGAAGGAAAAATGACCAAGAGATCTTTTTCTGGAAAAGGTCTCAAAGCAAAAATTCCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAACGTTAAAGCTAGGGGAGGGTACGAATATTTCATTAGTTTTATTGTTGATTATTCAAGGTATGGTCATGTTTATCTAATTCATCAGAAGTCTGATTCTTTTGAAAAATTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGGAAAAATAATAAAAATACTTCGATCAGATCAAGGTGGAAAATATTTGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATGCAGTCACAATTCTCTGCATCTAATACACCTCAGCAGAACGGTGTATTAAAAAGAAGAAACCAAACCTTATTAGACATGGTTCGCTCTATGATGAGCTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTGTCTATATTTTGAATAACGTTCCCTCTAAAAGTGTTTCAGAAACACCTTATGAGCTATAG

mRNA sequence

ATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACAATGATGGTGCCATCGATGAGGCTAATCAGGTATGGTCATGTTTATCTAATTCATCAGAAGTCTGATTCTTTTGAAAAATTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGGAAAAATAATAAAAATACTTCGATCAGATCAAGGTGGAAAATATTTGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATGCAGTCACAATTCTCTGCATCTAATACACCTCAGCAGAACGGTGTATTAAAAAGAAGAAACCAAACCTTATTAGACATGGTTCGCTCTATGATGAGCTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTGTCTATATTTTGAATAACGTTCCCTCTAAAAGTGTTTCAGAAACACCTTATGAGCTATAG

Coding sequence (CDS)

ATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACAATGATGGTGCCATCGATGAGGCTAATCAGGTATGGTCATGTTTATCTAATTCATCAGAAGTCTGATTCTTTTGAAAAATTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGGAAAAATAATAAAAATACTTCGATCAGATCAAGGTGGAAAATATTTGGACTTACGATTCCAAGACTATTTGATAGAACATGGAATGCAGTCACAATTCTCTGCATCTAATACACCTCAGCAGAACGGTGTATTAAAAAGAAGAAACCAAACCTTATTAGACATGGTTCGCTCTATGATGAGCTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTGTCTATATTTTGAATAACGTTCCCTCTAAAAGTGTTTCAGAAACACCTTATGAGCTATAG

Protein sequence

MYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTMMVPSMRLIRYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQSQFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSETPYEL

Homology

[Close]

BLAST of MELO.jh101681.1 vs. NCBI nr
Match: KAA0052874.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (536), Expect = 3.83e-64
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGH+YLI  KSDSFEKFKEYKA+VENE GK IK LRSDQGGKY+DL+FQDYLIEHG+QS
Sbjct: 48  RYGHIYLIQNKSDSFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA + PQQNGV +RRNQTLLDMV S+MSF+QLP SFWGY LE A+YILNNVPSKSVSE
Sbjct: 108 QLSAPSMPQQNGVSERRNQTLLDMVHSIMSFSQLPYSFWGYTLETAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. NCBI nr
Match: TYK14486.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (536), Expect = 4.93e-64
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGH+YLI  KSDSFEKFKEYKA+VENE GK IK LRSDQGGKY+DL+FQDYLIEHG+QS
Sbjct: 48  RYGHIYLIQNKSDSFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA + PQQNGV +RRNQTLLDMV S+MSF+QLP SFWGY LE A+YILNNVPSKSVSE
Sbjct: 108 QLSAPSMPQQNGVSERRNQTLLDMVHSIMSFSQLPYSFWGYTLETAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. NCBI nr
Match: KAA0062998.1 (putative retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (546), Expect = 1.70e-63
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGHVYLI  KSDSFEKFKEYKAEVENE GK IK LRSD+GG+Y+DLRFQDYLI+HG+ S
Sbjct: 48  RYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIDHGIPS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SAS+TPQQNGV +RRN+TLLDMVRSMMSFAQLP SFWG ALEIA+YILNNVPSKSVSE
Sbjct: 108 QLSASSTPQQNGVSERRNRTLLDMVRSMMSFAQLPYSFWGCALEIAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. NCBI nr
Match: TYK16350.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (536), Expect = 2.41e-63
Identity = 104/125 (83.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGHVYLI  KSDSFEKFKEYKAEVENE GK IK LRSD+GG+Y+DLRFQDYLI+HG+ S
Sbjct: 48  RYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIDHGIPS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SAS+TPQQNGV +RRN+T LDMVRSMMSFAQLP SFWG ALEIA+YILNNVPSKSV E
Sbjct: 108 QLSASSTPQQNGVSERRNRTFLDMVRSMMSFAQLPYSFWGCALEIAIYILNNVPSKSVFE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. NCBI nr
Match: TYK30724.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 2.45e-63
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYG++YLI  KSDSFEKFKEYKAEVENE GK IK LRSD+G +Y+DLRFQDYLIEH +QS
Sbjct: 21  RYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGEEYMDLRFQDYLIEHRIQS 80

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA NTPQQNGV +RRN+ LLDMVRSM SFAQLPDSFWGYALE  +YILNNVPSKSVSE
Sbjct: 81  QLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWGYALETTIYILNNVPSKSVSE 140

Query: 180 TPYEL 184
           TPYEL
Sbjct: 141 TPYEL 145

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-22
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 0


Query: 17  FKQSRQIQVQKSVVRRLHA--IFRSKVAG-----SPGGG---VTMMVPSMRLIRYGHVYL 76
           F +  ++  Q S  R+L+   +  S V G     S GG    VT +  + R +    VY+
Sbjct: 462 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL---WVYI 521

Query: 77  IHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQSQFSASNT 136
           +  K   F+ F+++ A VE E G+ +K LRSD GG+Y    F++Y   HG++ + +   T
Sbjct: 522 LKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGT 581

Query: 137 PQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPS 175
           PQ NGV +R N+T+++ VRSM+  A+LP SFWG A++ A Y++N  PS
Sbjct: 582 PQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPS 626

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 61  YGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQSQ 120
           Y   YLI  KSD F  F+++ A+ E      +  L  D G +YL    + + ++ G+   
Sbjct: 513 YCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYH 572

Query: 121 FSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSV--- 180
            +  +TPQ NGV +R  +T+ +  R+M+S A+L  SFWG A+  A Y++N +PS+++   
Sbjct: 573 LTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDS 632

Query: 181 SETPYEL 185
           S+TPYE+
Sbjct: 633 SKTPYEM 639

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-16
Identity = 43/125 (34.40%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RY  +Y + QKS   + F  +K+ VEN     I  L SD GG+++ LR  DYL +HG+  
Sbjct: 533 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISH 592

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVS- 179
             S  +TP+ NG+ +R+++ +++M  +++S A +P ++W YA  +AVY++N +P+  +  
Sbjct: 593 FTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQL 652

Query: 180 ETPYE 184
           ++P++
Sbjct: 653 QSPFQ 655

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 39/125 (31.20%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RY  +Y + QKS   E F  +K  +EN     I    SD GG+++ L   +Y  +HG+  
Sbjct: 554 RYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISH 613

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVS- 179
             S  +TP+ NG+ +R+++ +++   +++S A +P ++W YA  +AVY++N +P+  +  
Sbjct: 614 LTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQL 673

Query: 180 ETPYE 184
           E+P++
Sbjct: 674 ESPFQ 676

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 27/117 (23.08%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDS--FEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGM 119
           R+  VY +H + +      F    A ++N+    + +++ D+G +Y +     +    G+
Sbjct: 692 RFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

Query: 120 QSQFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPS 175
            + ++ +   + +GV +R N+TLL+  R+++  + LP+  W  A+E +  I N++ S
Sbjct: 752 TACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL
Match: A0A5A7UC33 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G00050 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 1.85e-64
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGH+YLI  KSDSFEKFKEYKA+VENE GK IK LRSDQGGKY+DL+FQDYLIEHG+QS
Sbjct: 48  RYGHIYLIQNKSDSFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA + PQQNGV +RRNQTLLDMV S+MSF+QLP SFWGY LE A+YILNNVPSKSVSE
Sbjct: 108 QLSAPSMPQQNGVSERRNQTLLDMVHSIMSFSQLPYSFWGYTLETAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL
Match: A0A5D3CVQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001560 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 2.39e-64
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGH+YLI  KSDSFEKFKEYKA+VENE GK IK LRSDQGGKY+DL+FQDYLIEHG+QS
Sbjct: 48  RYGHIYLIQNKSDSFEKFKEYKADVENESGKTIKTLRSDQGGKYMDLQFQDYLIEHGIQS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA + PQQNGV +RRNQTLLDMV S+MSF+QLP SFWGY LE A+YILNNVPSKSVSE
Sbjct: 108 QLSAPSMPQQNGVSERRNQTLLDMVHSIMSFSQLPYSFWGYTLETAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL
Match: A0A5A7V5V2 (Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00990 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 8.24e-64
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGHVYLI  KSDSFEKFKEYKAEVENE GK IK LRSD+GG+Y+DLRFQDYLI+HG+ S
Sbjct: 48  RYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIDHGIPS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SAS+TPQQNGV +RRN+TLLDMVRSMMSFAQLP SFWG ALEIA+YILNNVPSKSVSE
Sbjct: 108 QLSASSTPQQNGVSERRNRTLLDMVRSMMSFAQLPYSFWGCALEIAIYILNNVPSKSVSE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL
Match: A0A5D3CYB6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001330 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 1.17e-63
Identity = 104/125 (83.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYGHVYLI  KSDSFEKFKEYKAEVENE GK IK LRSD+GG+Y+DLRFQDYLI+HG+ S
Sbjct: 48  RYGHVYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIDHGIPS 107

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SAS+TPQQNGV +RRN+T LDMVRSMMSFAQLP SFWG ALEIA+YILNNVPSKSV E
Sbjct: 108 QLSASSTPQQNGVSERRNRTFLDMVRSMMSFAQLPYSFWGCALEIAIYILNNVPSKSVFE 167

Query: 180 TPYEL 184
           TPYEL
Sbjct: 168 TPYEL 172

[Close]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL
Match: A0A5D3E496 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00560 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 1.18e-63
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 60  RYGHVYLIHQKSDSFEKFKEYKAEVENELGKIIKILRSDQGGKYLDLRFQDYLIEHGMQS 119
           RYG++YLI  KSDSFEKFKEYKAEVENE GK IK LRSD+G +Y+DLRFQDYLIEH +QS
Sbjct: 21  RYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDRGEEYMDLRFQDYLIEHRIQS 80

Query: 120 QFSASNTPQQNGVLKRRNQTLLDMVRSMMSFAQLPDSFWGYALEIAVYILNNVPSKSVSE 179
           Q SA NTPQQNGV +RRN+ LLDMVRSM SFAQLPDSFWGYALE  +YILNNVPSKSVSE
Sbjct: 81  QLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWGYALETTIYILNNVPSKSVSE 140

Query: 180 TPYEL 184
           TPYEL
Sbjct: 141 TPYEL 145

The following BLAST results are available for this feature:

BLAST of MELO.jh101681.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052874.1	3.83e-64	81.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14486.1	4.93e-64	81.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062998.1	1.70e-63	84.80	putative retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK16350.1	2.41e-63	83.20	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK30724.1	2.45e-63	81.60	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh101681.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.4e-22	36.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.1e-16	35.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	9.0e-16	34.40	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.2e-13	31.20	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	6.4e-06	23.08	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC33	1.85e-64	81.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G000...	[more]
A0A5D3CVQ7	2.39e-64	81.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G0015...	[more]
A0A5A7V5V2	8.24e-64	84.80	Putative retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CYB6	1.17e-63	83.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00133...	[more]
A0A5D3E496	1.18e-63	81.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0056...	[more]

BLAST of MELO.jh101681.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 57..184 e-value: 1.1E-24 score: 89.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 93..184 score: 14.76286
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 60..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101681.1.t1	MELO.jh101681.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding