MELO.jh101639.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101639.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Gag-pol polyprotein
Location	chr05: 13076894 .. 13092223 (-)
RNA-Seq Expression	MELO.jh101639.1
Synteny	MELO.jh101639.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTTCACGTCAGGGGCTATGGACATGGGAATCTTGCCATTGGCGTGGACGCACCACTCCAACTCCAAGAGTCTATACTACGCACGTCTCTTAGGTGTTGGAGATGGTCGAGTAGTTTCTGTTGAATAAGTTAAAGCAACAAACTAATGTGTGATAAATAAGTTCAAATAATTGTGAGTTAGCGTACCAAGAGACTCATTCAAATTGTCGCCCACAGATGACGACCCCCTACAGTGTTATTTATATCCTCGGCGAACTCGGAATGACGAAATAATACCTATGGACATAGAAAATAAATATTCATTAAACAAATACAAACACAAAATCAGATTCAAAATATAAACTAAATAAATATGTGGGTACATGGTTTTTCACGATCATTTATCGTCGCTTGTTCCGTTTTGATATGACAGTTGTTCATCCCATCGTCTATGAAATCGCCAGCAACATGACGTACAATCGGTCTTTCAATGATTGAAGGATCAGCGTTAGTCCTGCACAGAGTGTCAACCTCAATGTGTTCATCCATTTGATGGCTGACAACGATTTCGAGTACATTCAGTTGCTCATTCTCAACATCATCCATTTCGGGCACGTCTCATATACGCTTATTCTGGACCAGTTGGACAACTCTCCCATTACTACCATTTTTGGGTTATCTAGGTAAAATAGTTGATGTACCTGGGTCGTAAGAATTACCTATTCCTCGACGAACTAAAAATAGGACGTGTTGATAGCTTTGTACCCCAATTCCACATGTCCTTTGACTTTTGTTGACGTTGGTGTCATACCATCGACACTTAAATAATCAAACACTTATTCTCATTGATATTAAACGTGCAACACTTCGTCCAAATCACCGTAAAAATTGTTGTTGTCACTTCCATTGGCATTGCTTTCACCGATTACCATCACGTCACTGTTTTGTGTAGTGTGCTGGAAATTACGTTCTGACGTGTGAAACCTCACACCACCCATAATGCATCCATTATAACACTGAACGTTAAGTGCGTCTCATCGTAAGTGAGAAGAAACCGTGAGATAGATTTTCAATCTCACGCAATTTTATAACCTGAAATCCATGTGACAATGATTATATACATTCACATGCAAATACGTTAGTGCATACATGTTACCTATCAAATGTGTGAACGATATATACATGATTTCGGAACCATTTAGGAAATCTCCGTTGATGTTTTTTGTACAAATTAGTAGCGTTTTAAGCCTAACGACGTATTAACCTCAAATGTTTTCTGAAAGGGATGATTATGAGTTTAATTTGTATAATAACAATGTATAACAAATACTGAACAACTATACCTAAGAAATATGAATATAAGAAATGCTTACTTGCGATACTCTGATATTTCATCTACATTGTTGAGGATGTACCAATGGAAGAGATGTTTCTCTTCATGTGATAGAGTTTGAAGACTTGATGCACCTAATGGTCGTACTTTCTTCTTGAAATTCTCAAACTCATCAATCACCTTGTCATCTGGAATGGTATCATCATTTTGCTCATCTCTTGTCAAAATGAATCTGTGCTTGACTTGTATTCCCAAAAAGCTTTTCTAAAATCTTCACTCACTAAGTATTTGACTTACGTGTTTAAGTTTTTCTTCCCCAAGTGTTCAGGTGTTGAGGCAAAGTAAGGAAAGGTAAGATGTGTTGTGACATGGGGCTGATCAAGTTATCTGTCTCGGATGGTTTAAAGTTATTATACTTAGAAAGGGTTGTATCTCAGTTTTATGTGTAGGATGAGTCTTGTCTGTGAGATGGATGGCTAGGCGATGAAGGAGAAGGATAAGAAAGGGGTTCTTATACTCTTAAACACCTTGACGCAAATAGTAGCATCCTAGTAGATGAAGGAAGGCAAGGAGCTTACAACTTAGGTTTTATTTTTGTGTCTTGCGAGAAAAGAAATGTAATTGTAAAGTATTGGATCAAGTAATAAAAGCAGAGTTGTGTTTTCTATCTTTCACTGTGTTGAGTATATGTATCCCTATTGCGCTTATCGCTTAGTAGCTAAAAGGTTTAAGTGTTGAAGGCTAAACGATTAAGCTAAGTTGATTGTTTGAGTGTTTTCCGTTGCGTTGAGTTGTAAAGATCTTCTAAGTTTAAAATTGGAACTCTATGTTGAAGATTGGGGCATTGAGAAATTTTGCATACTAGACGTACAACTCGTTATCTCATGGAGAGGTACGCGTTGGGTGTCTGAGCGACACACCTTCTATTGGTTGCATGAAGTGGTTAGGTGGGCGGGGAGCGACAGGTAAGCCTAGCGGTCAGATTTTTGCATCTAAAAGAGTCAATCAAGAAAACCAACCATTCCTTTTTATATTTCTTCTTGTGAGTGAAGTTTTGGGTGATGGACCTCGAGATATACACAGCGGATTTAGGATCTAATAACAGTCTAATTGCATCTAATTAAAAAAAACTAACATGCATGAAACACTACTTTACATGTTTAGTGTTTATAGAAATTATACCTTTGTAGGTCTCAAATACTTGTAGTTTTTACACAAAAATGACACAAATTGCCCTATACTTACCTAATATTTAGATGGAAGAAGTGGGAGGTTGGAGATAATAAATGGGAACGTGGTAAAACCACCCACGTTCTCTATTAACTTAATAATTATTATTAAATTAATATATATTAAACTAATTAATTAATTTAATTAAATAATTAATTAATTTAATAATTAATTAATTTAATAATTAATTAAATCATATTTAATTAATATTTTCATTTAAATCATATTTAAATGAATATCTCTCGCATAACCTATAGTTTTAATTTAATTAATTTAATTAATTTAATTAATTTAATTAAATCAAATTTAATTAAATCAAATTAAACTAAACTATTAATTAATTCTCCAATTAATTAATTTCTAAATTAAATATAGATATTTAATTTAATCCATAATTTGAATCATATTCAAATATAAATTTCTCTCATAACCTATAGTTTTAATATGTATCATATATACATTAAACTTTAACTTATAGTTTCAATATGAATCTAATTCACATTAAACTAATATTTGAACTTATTCAAATATTTTATTCTCTCGTAATTTAATTTTGAATCATATCCAAAATTAAATTTATATAATAAAGTCTAAATAAAATATAAACTTTATATTATAATGTATCAATATACATTATATTAATTCTCAAAGTAAATTTGAACATTTCAAATTACAACCAATAAAAATAAATCTCATTACTCTTTATGAGCTAGGAAGGGGACCTAATGGACCTACAGATCAGAAGCTACAACGATATGAGATTAATTGGCTAAACTCATTAACCACATTAATCAATATTCGTTAACCGTGTGTACACTCCACTAAAGACTCACAGCTGAACTCTTCTCACTGTAGATATATTTCTGTGTCCACGGATATATACCAATACCAGTAAGTTAGTCCTTCACAAGTGTTCGTAAAACCAGCTGGGTCAAATTACCGTTTTACCCCTGGGTTACTTTTAGTCCTTAAATACCAGTGCTCCTCTAATGAACAACCTGTTTATGGTCTAACCACTAAACAGAAACCCCTCTCGTGCCATAAAGAGTGTAGGGCCCTTTGTTCAAGTCCCGGAGACACCATTTAAGGGAACACTTATCTACTTACCCTAAAGGTGAGAAGGAGTGAATTCCATCTTGTGAGATTATGTTCCGAGCTCCCCTCTCGGTTTTGTCCCCAAAATGATAAGAATATTGAGTCAGCAATTTGGCCACTCTCACCCGTACAAATCAAAGGACAATCCCTCGCAAACGGAGTTCATAATACACTCAGGATTAAGACTAAGTTGGCTAGGTCATCCTAATGAAATAGAAATCCAACTAGTTAACGGAGTTACATCTAGTGATTACTATTTCGTGGTTCAGTCTTATGCAAACTCATTGCATAAGATACCTTCACTTGCATGTCCCATACATGAACGCATTGGATCAATGTGTTTGTATCAAATACAAAGTGAGCCGTATCCATAGTGTTAACAGGATAAGGTACCCAACCTTAACCTTATACTATAGATCCTTTAAGCTGATCTTGAACATTGATCCCTGTATGTCTCTACATACTATTCACGACTTATCAAACAGCTTAGGATGTTAGTTTATTGGATTTAGGTTATAAGATAAAACTAATAATATAATCAATAACACTTATTGAAACTATAATAATAAAACACTTTATTAATAACGGTCAATTGATTATATTTACTATCTACGAGTTTTAGGACATAAAACCCAACACTATATCGCAAAGCAATATATGATCTCTTCTTATGAGTCAATGACCCCCCAGAAGTATATGTTGTGTTATCGAATTAGGTTACTAATGTTTGGTGTTCTGATTGTTATTATTATTTATTTCCTAAGTTGTTCCTTCATTTTTTAACTCGCGTGTTAACTTAAGATATCAAGTTAATAGAGTCTTTATTTTTTTTCATTTGGTAGCAGAGTGGGTTACGAAGTCTATTTGTGATATGGAATCTATTCATGAAGGAAGTTCAACTACGAGACATTTTCTTCTGGATGGATTTAACTATATCTACTGGAAAGCAAGGATAATAACATTTTTAGAATCTATTAATAGCAAGACATGGAAAGCTGCAGTAACTGGATAGAAACATTCAACTGTAAGGATGTTGTGGAACAGTCTCTCATAAGCCTTAAATCTCATGGTTTAATGCTGAAGATGAAGCATCTCTGGGAAATTCTCGTGCTTTAAATGGAATTTTCAATTGAGTGGATCGAAATGTGTTCAAATCATTAACACTTGCACTTCTGCTAAGAACACTTGCACTTCTATTAAGGAGGTCTAGAGTATTTTAGAACAAATTTCCAAGGTGAAAATGTCTTGGCTGCAACTTTTAACTTCAAAATAATTTTAAGCTCTTAAAATGTCTGAAGATGATTCGATAACTGAATTTAACTTTTGTGTTTTTAACATAGGAAACGAATCTTTTGCTCTAGGAAAGAAAATTTCAGATACGAAACTGATCAGAAAAGTCTTGTGCTTCCTTGCTTAATAGTTCAGCATGAAAGTCACAACCATAGAAGAGGCTAATGATATTGCCTCAATGAAATGTTTGGTTATTTAAGAAAATTTAAATTGAATGTAGGAGATTGTGATTAAAAAAAATTGAAGTAGCATTACAATCTGTGAGTGAGGATGTTCCTCAACAACATAAAGAATGAGATAATGATGATAATTTAACCGACTTTATTGCTCTTTTGATGAAGTAAGTTTCAAAGCTTAGAAGTCAGTTTCATAAACGTTTTGGAAATCATGGAAGTCAGAATAACAAAGACTTTTGTGGTTTAAACTCTTCAAATTATGGTGGTAGTTTAAGTTCTTCTAGTTTATATGGAGATGTCATAAGTGTGAAGGGTTTGGGCACTATCAAGCTAAGCCCCTACCTTTCTCAAAAGAAAGAAGAAGAGTTTGACTATTACTTTGTTTGATGATGAGTCATCTTCTGATAGTGAAATAGAAGAAACAGTTGTACTGTTGAAGAAGAATAAGAGGACATTGAGAGTTTGTATGATTAGAAGTCTGTTGTAAATTGCACTGAAAATGATGGAAGGTTTAAATTTGTTAAGCCAAGCAATGATGATCTTTTTTTTTATAGGAAGAAGAGCGAGATGTGTCGAAACAACAAAAAGAGAGAATACATACTCTGATGGATGACAATCATCGTCTAATAACTATGATTTCTACACTTAAAATTGAAACGAAGGATGTTCGTCCTAACTTTGAATCTTTATCAAATTCTGTCTAAATGCTCACCTCAGGGACTGAGAGTTTGGATAATATTTTAAATGATGGGAAGTCTAAAAGTGACAAAAAAGGACTAGACTTTTCTGGTCAAAGTTTTGATTCTGGAAAGTCAACTAAGATGGTGTTCGTGCGTCAGATAGTAAAGATTGCAATAAAGAAAAAACAGTTTTTTCAGGAGTTAATATTATTCATTGAAGGACTACACAGAGGACTTAAAAAATATGGACTTGTCATTTTTGCAGTCGATCTAGCCATATACTACCATTTTGTTATCGCTTGCATGAGTATCTACGTCACTCTAACAGAAGGTATTATGGAAATATCAACAGAAAAAATCTTTCTCATTCAAAATCTAAGTATGTCTAGAGAGTGAAGAGAAAAGAAATTATTGACAATTCTAATGTGTCATGTACTTCTGCTCATACTTCAAGATCAAAAGACTGGTATTTCGATAGCGGGTGTTCCAGACATATGACTGGGAGCTTTGCATTCTTCTCATAATTCAAGGAATACAATGCTGGTCCTGTTACTTTTAGAGATGGAGTTAAAAGGAAAAGTTCTTGGCAAAGAGAACATAAGTAAACCAAGCTTACCGAATCTTCAAAATGTGAGGCTTGTAAAAGGTTTATCAACTAACTGAATCAATATCAGTCAATTGTGTAATGAAAGTTTTTTTTTTTTTTTTGTCAGATTTTGTCAAGATAAGTGTGAAGTTCTAGGACCATGACAAAAATACTATTATGAAATGAACTCGATTATCAAACAATCGTTATCATTGGGATCCTGATTTACAGAATTCTGTGTGCAACTTGTCTAAATCAGATGAAGTGGAAATATATGGTTTAAGCATCTCAGACACATTAGCCTTTCTTCCATATGCAAGACTATTAGTGTTGAAGCTGCTCTAGGAATTCCTCTATTGAAAGCTAAATCTCACAATTTTTGTGACGAGTGTCCTATTGGGAAGCAAATTAAGATTTCTCACAAGTCTGTTGGACAATGTATTACGAATTGTGTGCTCGAACTTTTACTTATGGATCTGATGGGTCCTATACAAGTTGAAGGTCTTGGTGGAAAAAGGTATGCATTTGTTTGTGTTGACAACTTTTCAAGATACACTTGGGTGAAATTTATAAGAGAGAAATCAAATACCAGTTCATTATGCCCTGTGTCTTCAACTTCAAAAGGAACAAGACAAAGCTATTATTCTATTCGCAGCGACCATGGACATGAATTTGAAAATACTACCTTTGATAACTTTCGTGTAAATGAAGGCATTTTTCATGAATTTTCAGCTCTTTTGATTCCTCAACAGAATGAGGTTGTTGAGTGCAAGAACAGAACATTGCAGGACATGGCTAGTGTAATGTTGCATGCCAAGTCTATTCCTTCATACTTTCTGGTAAAAGCTTCGAATATTACCTGTCATATTCACAATTGTATTTCTCTCCATCCTGGTATGTCACTCACCAACTATCAGTTGTGGAAGGGACGTAAGCCAAATATAAGGTACTTTCATGTTTTTGGTAGTATGTGCTATATTTTGGGAGATAGGGAGTTTCATCATAAATGGAACTCTAAGTCAGATGGATGGATTTTCTTGGTTACTCTACAAATAGTAAAGCTTTCAAAGTGTTTAACAAGCACACCAGAACTGTTAGAGAGTCTATTATTGTTGTCATTAATGACACTATTGAAAGATTGGTAAAGCATAGAGATGATGATGACCCAGTGGTCTTCCCTGTGAGTTCTTCTCTCAATAGTGAATGTAGTTCAAAGAATTCTACTTCAGTCAATGCTAAAAGGACTAACTCTAGAATGTCCTCATCTGCCAATGAGTCAGGCAGTGCTCATTCTATCGATTCGCCAGTTATTAACTTTAGGGATGACTTTAAAGACGTTAGTTCGACTGTTTCATCAGTTGTCAAAACAATTGCTCTATTAGCTCATATTATCAAGAATCATTCATCCAATAGTATTATAGGAGAGATAGACAGTGGAATTACAACTTGTAAAAAGAATCGTTTTGATTATATTAAAATGATTGGGAATGTATGTTATACGTCTCCTTTTGAACCTACCAGTGTTAATGAGGCTCTAAAAGATGAACAATGGATTGCTGCTATGCAAGAGAATTACTTCAATTTGAACGTGGTAAAGTCTAGAAGTTGGTTCCAAAACCTGCTTATGCTAATATTATTGGAACCAAGTAGGTATTTAAAAATAACATTGATGAGCAGGGAATTATAACCAAGAAAAATGCTCGCCTTCTTGCACAAGGATATGCTCAAATTGAAGGTGTGGATTTTGGTGAAACATTTGCTCTAGTTGCTCGTCTTGAGGCCATTTGCTTGATGCTTAGATTTGAATGGATAAAAAGCTCTTTACAGCGGAAGAACTACAGAGACTCAATTTTAATTAGAACCTTAAAAAAATACTAATACATTGGTAAAATTATAAAACTGATTTTTATGGCTAAACATGCTTTGAATAAAATACAAAGAAGAAGAACTTACTCTCGTTGACGACTCTGAATCTACCAAACACCAACTTGGGGCACCACCACTTGGAAACCTTCTTATTCTCTGATTGAGATGGTTTGTGGGAACCAAATTGGATTGAAGGAATTTTTCTTTACAGAGAAATTTTTTTTCAGAGAGAACAGGAGAGCAACCTTGTTCGTAGAACTCATCTTCTGTTTTGTTACACAAAAATTCCCTCTTCTTCATACAGAAGAAGTGGGAAGTTGAGAGAATAATTGGGAATGTGGAAAAACCACCCACGTTCCCTATTAATTTAATAAATAAATATTAAATTAATATATATTAAATTAATTAATTAATTAAATTTAATAACTAATTAATTAAATCATATTTAATTAATATTTTATTTAAATCCTATTTAAATAAATATCTCTCGCATAACCTATAGTTTTAATTTAATTAATTTAATTAAATCAAATTAAACTAAACTGATTTCTAAATTAAATATCTTATATTTAATTTAATCCAAAATTTGAATCACATTCAAATATAAATTTCTCTCATAACCTATAGTTTTAATATGTATCACATACACATTAAATTTTAACCTATAGTTTTAATATGAATCTAATTCACATTAAACTAATATTTGAACTCATTCAAATATTTTATTCTCTCATAATTTAATTTTGAATCATATCCAAAATTAAATTTATATAATAAAGTCTAATTAAAATATAAACTTTATATTATAATGTATCAATATACATTATATTAATTCCCAAAGTAAATTTAAACATTTCAAATTACAACCAATATAAATAAATCTCATTACTCTTTATGAGCTAGGAATAGGATCTAATGGACCTACAGATCAGAAGCTACAACGATATGAAATTAATTAGTTAAACTCATTAACCATATTAATCAATATTTGTTAACTGTGTGTACACTCCACTAAAGACTCACAGCTGAACTCTTCTCACTGTAGATATATTTATGTGTCCACGGATATAGACCAATACCAGTAAGTTAGTCCTTCACAAGTGTTCGTAATACTACCTGGGTCAAATTACCATTTTACCCCTGGGCTACTTCTAGTCCTTAAATACCAGTGTTTCTCTAATGAACAACCTGTTTATGGTCTAACCACTAAACAGAAACCCCTCTCGTGTCATAGAGAGGGTAGAGCCATTTGTTCAAGTCCCGGAGACACCATTTAAGGGAACACTTATCTACTTACCCTAAAGGTGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAAGCATATTAAGTCGGCAATCTGGCCACTCTCACCCATACAAATCAAAGGACAATCCCTCACAAATAGGAGTTCATAATACACTCAGGATTAAGACTAAGTTGTCTAGGTCATCCTAATGAAATAGAAATCCAACTAGTTAACAGAGTTACATCTAGTGATTACTATTTCGTGGTTCAGTCTTATGCAAACTCATTGCATAAGATACCCTCACTCGCATGTCCATCCTAATGAAATAGAAATCCAACTAGTTAACAGAGTTACATCTAGTGATTACTATTTCGTGGTTTAGTCTTATGCAAACTCATTGCATAAGATACCCTCACTCGCATGTCCCATACATGAACGCATTGAATCAATGTATTTATATCAAATACAAAGTGAGTCGTATCCATAGTGTTAACAGGATAAGGTACCCAACCTTAACCCTATATTATAGATCCTTTAAGCTGATCTTAAACATTGATCCCTGTATGTCTCTACATACTATTCAAGACTTATCAAACAGCTTAGGATGTTAGTTTATTGGATTTAGGTTATAAGATAAAACTAATAATATAATCAATAACACTTATTGAAACTATAATAATAAAACACTTTATTAATAACGGTCAATTGATTATATTTACTATCTACTTGTTTTAGGACATAAAACCCAACAAGATTAGCTTGTATTCTCAAAATCAAGTTGTATCAAATGGAAGTCAAAAGTGCATTTTTAAATTGTTTTCTCAACGAAGAAGTATATGTTTTTCAACCGAAAAGTTTTGTAGATCCCTTCAATCCAAATCACATGTATAAGCTGCATAAAGTCTTGTACAGACTTAAGCAAGCTTCTCAGGCTTGGTATGAGCGCTTAACTGAGTTTTTGTCTCAATAAGGGTATAGTAGAGGAGAAGCAGACAAGACTATGTTTATCAAAATTTGAGACAAGATTTTTTGGTTACACAAGTGTATGTGTTGATGATATCATATTCGGTGGATCTCCTAAAGCTCTTGTGACGACGTTTGTTGATCAAATGCAATCCGAATTTGAATGAGCATGGTCGATGAACTAACTTTCTTTTTGGGCTTCCAAATTTGATAGTGCCATAATGAGATTTTTTTTTTATCTCAAGAGAAATATGTTAAAAGCATGGTCAAAAAGTTTGGTATTGATAAGTTGAAACCTAAAAGGGCTCTTGTTGCTTCCCATACCAAGATACCAAGAGATGATTCTAGGGAAAAAGTTGATGAGAGTATGTATCGCAATATTATTGGAAGTCTTTTATACTTAACTGCTAAAAAACCTGATATTGCCTTTGTTGTTGAAGTTTGTGATCATTATCAATTTGATCCTCGTGCTTCTTATATTCACTATGATAAAAGAATTTTTAAATACATTCTTGGTACCCTGGAATATGGCTTGTGGTACCCTTTTGATCTACCTCAATGCTTGTTGGTTACTGTGATGCAGATTGGGCAGGGTGTTCTAAGGACCACAAGAGTACTTTGGGTGGTTGATTTTCTTTTTTGGGCAATAATTTTATTGCATGGTTTAGCAAGAAACAAAATTGTGTATCTTTCTCTATAGCTGAGGCGGAATATATTGCAGGTGGGTGTAGTTGTACGTAGCTGTTATGGATGAAATAGGTGCTTTTTTAATATGGGATTTCTAAAAATTCTATGGTTCTCTATTGTGATAACATGAGTGCGATATTCTGTTTAGCACAACCATACTAAATATATTGTCATTCACCATCACTTTATGAGGAAATTGGTTGAAACTGAAGTGATTGTTTTAGAGCATGTTCAAAGCTCTCTTCAGTTTGCTGATATTCCCACGAAGCCCTTGAAAGCCACTGTTTCTAAAGATTTACGAGTTGGGATTGGAGTCTGTAAATACAGTTCATAGCAATTAAAGTTTTCTAGTTGTTTTTCCTTTTCTGGGCTTGTCTTTGGGGTTAATTACTTATTATTTTTGGACATTCCCTCAGTTACTCGACCTACAAGGTAAAAATTTGAATTTTCTTTCTTTGATTTGTCATTTACGTGAGTCTCTTCTTCTTCCTTGGGTAGTGTTTACTTGCACCAATCCCCGATCATGTCTGTCGCTTTGTTTACTGCACTCTGGTGACTACTTAGTGTCTTCCATCGTCAAAATGGTTTCCACTCGTAAAGGACATTATCGTTATGCTACTTCTATTTCACCTGCTACTACGTCAACTCTTTCTCCCTCAAGCTTTAAGCCTATTATTCCTCCCAAATCTAAACAATTCAAGATAGTCCCTGTTCAAAGTCCATTAAAGCATCTTCGTAGTCAAACTACTTTCTATCAAGCTTCTCTGACGTCTGACTCTTTGCATGATGATGTTGACTCGTCTGTTGGTGCCTCTGTGGCCTCTTCTACTTCTAGTTCTCATTAGCAATCTAGTTCTAATGTTGTCAAGCTTGCTCATGTCTCTTTTGTGTCTGCATTTGACTCATCTACAAGCCTTCTAGTTTGGTTTCTGCTTAAAATACGATTCCTATTGAGTCCATCTTTGATTCCCTTGACGAGGATGACCATGTTGCATTGCATGAGTTGTTACGACATCCCCGACGTCCTTTTGTTACTCAATCTAACTCGATTCCTCCTAAGTCTAATATTACTACTTTTGTTGCTCCAACTGTCCCTTATAAGACCTCTGTGTCTGATGCACCTAGTGCTTCTGTCTGTCCTCCTCGTTCTTCAAATATTGGATCTTCTCCTATTGGCCTTCTTATTGACTCTCATGTTGATGACTTTACCTTTAATGCATTTGATTCTTTTATTGATCCTATTGTTCCCGATATCTCTCTCATGCTGCTAATCCAGTTGATGATTCTTCTCGCATGCCTCCTACAACCTTCTCTGAGCCTACTTTGTCCCTACTCTTGTTGGTACAACTTCAACTAGTGCTCCCATTGAACCTTCTGTTATTCATTCTGCTGGCCAGTCTAATATTCACTATGATAATCCTCCTACTCCATCTAACCCTTATGCGACTTCTCAACCTGCAATCTTTTGTTCCTTCTTCATTTCCAAAAATTCTTCATAGGCCTCTTGCCACAGCTTAAAAAGTGATTACTATTGAGGCTAGCTGGCACAAACTTCCTTTGGATGTTCTCGCTGTTCCAATTGATGGAGTCTCTTTTTATTTCGAGGATAGCATGCATAAGTAGAAACATATGGTTCAATGAAGATGATGTTATTAGACTGCTTGACTTATTTGATGATAAAGATACAATTTAATTAAAACATACATTCATAATTTTAAATTAAAATTTGGTTGTACTACAAATTTTATTCCAAATTTCATCCAACTTCAAATTTCAAATTAATTTGCGAACGTGACCTCTAATTTGTCTCAAATTTTAGATTGGATCATTATCTAAAATTCATCCCAAAGCAAAATCGAGGAAAATTCAAATTTCATCCTCAAAATTGATAAATGAAATAGAGACAAAATCAAGAATACATTACTTGTATTTTGATATCAATTTTATCTCAAATTAAAATTTGGTTATATTCTAAAATTTATTCCATATTCAAATTTAGATTTTTATCCTCAAATCAAATTTAAAACCTCAAATTATTTCAAATTAAAGTTAAGCCATATTTCAAAGATTATCCTAGATCTAATTTATCCAAAATTTAATTCAAACTCAGGAACTAAATTCATTGTTTGATTGATTTTGACATGTCAAATTGAGCCAAAGTAAAAAAAGAAATTACTGGTATTTTGACTTCAATGCTATGCTTGTATTTTGACTTCAATGTTACGTTTTTCGAAATTCATCTACTGTACATACACAATTCTCGAAAATGGTATTTGTTGGATGAGAAATTTGATTAAATGGTAAATCAAATCAAGTGAGAGAATGGGAGGATAAAGTATCTTTCAAGATGTGTTGTAGGATATACTAACAGGTTTTTTACGATTAATTGTAAAATTTCAAAATTACGTGAATTAAAGAACGAGAAACTTTTATAACAAACTACTAAAATATTTACCATCCAGGTAACAAAGCCCATAAATTTAACCATTTTTTACATATTATATGTTTTCCCTTTTATCTTTTTCTCCTCTATGTGATTTTTTTATCGTCTTCCTCCTTTACTCTTCTTTTTTTAGCTACGATTTCTTCCATCCTTCTTGTTTTTTTTACGTCGTTTAGATTTGGGTAACCAAATCTGATTTCTTTCTGTCGTTTTTCTTGTTTTTCTCTTTTTTTTTTTCGCTGCATGCATGTCTTTCTTCTTCTTTCTTCTTTTCGTTTGCTAAGTGCATCGTCTTTCTTCTTTCCTTTTTTTTATACGTTGTTTAGATTAGGATAACTAAATCTAAAAGATGATGTATAAACGTTTAGCCATTTAAATTAGGGTAACCAAAGCTAAAATATTGTGTATAAAAAATCTTAAAAAAAATCGTTTAGCCAAATCTAAACGATCGTGTATCAAATTTTGAAAAAAAAAATCGTTTAGATTTAGGGTAGCTAAATCTAAACGATTGTGTACCAAATCTAAACAATTATATACCAAATTTTGAAAAAAAAAAATCGTTTAGATTTGTGGTGAAATCTAAACGATCGTGTACCAAATATATTACATGCGTTGTTGACGATGAATTATCTTTATACCCTAAACCCTAAATATAACAAACTAGTGAAATATTTATGACTCGTGTAACAAAGCCCATAAATTATCTTTTTCTCCTCTCTATGATTTTTTGTCTTCCTTTATACTCTTTTTTTTTATTGCGATTTCTTTCAAAAAAGTTTCGTTTTTAGATTTGGGTAACCAAATCTATTTCTTTCTATCGTCTTTCTTGTTTTTTTTTCTTTTTTCAGATGCGTGCATGTCTTTCTTCCTCTTTTTTTTTCCATTCACTGCATGCATCATATCATCTTTCTTTTTTTCTTTTTTTACGTTTCGATTAGGTAACCAAATCTAATGGTGCATAAGAATCTTGAAAAAATTGGTTAGGTCTTTAAATTAGGGTACCAAAACTAAAAGATTGTGTATAAAGAATATTAAAAAAAAAACTTTATACCAAATTTTGAAAAAGAAAATTCCCAAATCTAAACGATCTTATAGCCAAATCTAAACGATGACATTCGAAATTTTGAAAAAAAATCGTTTAGATTTGGAAATAATGTAGTCAAATCTAAACGATCATATACCCAAATCTAAGACTGTAGCCAAATTTAAACGATATTGAAAAAAAATAGTAGTCAAATCTAAAGGATTGTGTAACCCAATTAATTAAAGGATGAGAGAATTGGAAAAACAAATATAAACAATTGTGTACCACAAATCTAAACGATCGTGTACCAAATTGTGTTACCAAATATATTACGTCCATGGGTATTTTTAATATTTTATACAATGTAAATACTTTGTCGTTTTTTTATATTTTTGAAAATACTCGAATATTTTAGCTTTGTTATATTTTTTAAAAGACGGTTAACGATCAGATTATTTCAAAATTTCAAATCATTTATCCGTCAAATTTGTAATTAATTAATATTTGAAGGAGAAAGTCGTCTAAAAATGATCTTAAGAAGTTTTCCCCGTAGATGATCCTTTTTCCGTTTCTTTATTTGAACCTCGCTCTTTTATATATTTATCTATATATATATATATATATATTAAATTTGGCTGGTGAAAATTCCTTTGAAACAACGCCGGTGGTGTTGTTCACCGTATACTGA

mRNA sequence

ATGCTTCTTCACGTCAGGGGCTATGGACATGGGAATCTTGCCATTGGCGTGGACGCACCACTCCAACTCCAAGAGTCTATACTACGCACGTCTCTTAGGATCAGCGTTAGTCCTGCACAGAGTGTCAACCTCAATGTGTTCATCCATTTGATGGCTGACAACGATTTCGAGTACATTCAGTTGCTCATTCTCAACATCATCCATTTCGGGCACGTCTCATATACGCTTATTCTGGACCAGTTGGACAACTCTCCCATTACTACCATTTTTGGGTTATCTAGACACATTAGCCTTTCTTCCATATGCAAGACTATTAGTGTTGAAGCTGCTCTAGGAATTCCTCTATTGAAAGCTAAATCTCACAATTTTTGTGACGAGTGTCCTATTGGGAAGCAAATTAAGATTTCTCACAAGTCTGTTGGACAATGTATTACGAATTGTGTGCTCGAACTTTTACTTATGGATCTGATGGGTCCTATACAAGTTGAAGGTCTTGGTGGAAAAAGGTATGCATTTGTTTGTGTTGACAACTTTTCAAGATACACTTGGGTGAAATTTATAAGAGAGAAATCAAATACCAGTTCATTATGCCCTGTGTCTTCAACTTCAAAAGGAACAAGACAAAGCTATTATTCTATTCGCAGCGACCATGGACATGAATTTGAAAATACTACCTTTGATAACTTTCGTGTAAATGAAGGCATTTTTCATGAATTTTCAGCTCTTTTGATTCCTCAACAGAATGAGGTTGTTGAGTGCAAGAACAGAACATTGCAGGACATGGCTAGTGTAATGTTGCATGCCAAGTCTATTCCTTCATACTTTCTGGTAAAAGCTTCGAATATTACCTGTCATATTCACAATTGTATTTCTCTCCATCCTGGTATGTCACTCACCAACTATCAGTTGTGGAAGGGACGTAAGCCAAATATAAGATGGATGGATTTTCTTGGTTACTCTACAAATAGTAAAGCTTTCAAAGTGTTTAACAAGCACACCAGAACTGTTAGAGAGTCTATTATTGTTGTCATTAATGACACTATTGAAAGATTGGTAAAGCATAGAGATGATGATGACCCAGTGGTCTTCCCTGTGAGTTCTTCTCTCAATAGTGAATGTAGTTCAAAGAATTCTACTTCAGTCAATGCTAAAAGGACTAACTCTAGAATGTCCTCATCTGCCAATGAGTCAGGCAGTGCTCATTCTATCGATTCGCCAGTTATTAACTTTAGGGATGACTTTAAAGACGTTAGTTCGACTGTTTCATCAGTTGTCAAAACAATTGCTCTATTAGCTCATATTATCAAGAATCATTCATCCAATAGTATTATAGGAGAGATAGACAGTGGAATTACAACTTGTAAAAAGAATCGTTTTGATTATATTAAAATGATTGGGAATGTATGTTATACGTCTCCTTTTGAACCTACCAGTGTTAATGAGGCTCTAAAAGATGAACAATGGATTGCTGCTATGCAAGAGAATTACTTCAATTTGAACGTGCACAACCATACTAAATATATTGTCATTCACCATCACTTTATGAGGAAATTGGTTGAAACTGAAGTGATTGTTTTAGAGCATGTTCAAAGCTCTCTTCAGTTTGCTGATATTCCCACGAAGCCCTTGAAAGCCACTGTTTCTAAAGATTTACGAGTTGGGATTGGAGTCTTGTCTTCCATCGTCAAAATGGTTTCCACTCGTAAAGGACATTATCGTTATGCTACTTCTATTTCACCTGCTACTACGTCAACTCTTTCTCCCTCAAGCTTTAAGCCTATTATTCCTCCCAAATCTAAACAATTCAAGATAGTCCCTGTTCAAAGTCCATTAAAGCATCTTCGTAGTCAAACTACTTTCTATCAAGCTTCTCTGACGTCTGACTCTTTGCATGATGATGTTGACTCGTCTGTTGGTGCCTCTATGATCCTTTTTCCGTTTCTTTATTTGAACCTCGCTCTTTTATATATTTATCTATATATATATATATATATATTAAATTTGGCTGGTGAAAATTCCTTTGAAACAACGCCGGTGGTGTTGTTCACCGTATACTGA

Coding sequence (CDS)

ATGCTTCTTCACGTCAGGGGCTATGGACATGGGAATCTTGCCATTGGCGTGGACGCACCACTCCAACTCCAAGAGTCTATACTACGCACGTCTCTTAGGATCAGCGTTAGTCCTGCACAGAGTGTCAACCTCAATGTGTTCATCCATTTGATGGCTGACAACGATTTCGAGTACATTCAGTTGCTCATTCTCAACATCATCCATTTCGGGCACGTCTCATATACGCTTATTCTGGACCAGTTGGACAACTCTCCCATTACTACCATTTTTGGGTTATCTAGACACATTAGCCTTTCTTCCATATGCAAGACTATTAGTGTTGAAGCTGCTCTAGGAATTCCTCTATTGAAAGCTAAATCTCACAATTTTTGTGACGAGTGTCCTATTGGGAAGCAAATTAAGATTTCTCACAAGTCTGTTGGACAATGTATTACGAATTGTGTGCTCGAACTTTTACTTATGGATCTGATGGGTCCTATACAAGTTGAAGGTCTTGGTGGAAAAAGGTATGCATTTGTTTGTGTTGACAACTTTTCAAGATACACTTGGGTGAAATTTATAAGAGAGAAATCAAATACCAGTTCATTATGCCCTGTGTCTTCAACTTCAAAAGGAACAAGACAAAGCTATTATTCTATTCGCAGCGACCATGGACATGAATTTGAAAATACTACCTTTGATAACTTTCGTGTAAATGAAGGCATTTTTCATGAATTTTCAGCTCTTTTGATTCCTCAACAGAATGAGGTTGTTGAGTGCAAGAACAGAACATTGCAGGACATGGCTAGTGTAATGTTGCATGCCAAGTCTATTCCTTCATACTTTCTGGTAAAAGCTTCGAATATTACCTGTCATATTCACAATTGTATTTCTCTCCATCCTGGTATGTCACTCACCAACTATCAGTTGTGGAAGGGACGTAAGCCAAATATAAGATGGATGGATTTTCTTGGTTACTCTACAAATAGTAAAGCTTTCAAAGTGTTTAACAAGCACACCAGAACTGTTAGAGAGTCTATTATTGTTGTCATTAATGACACTATTGAAAGATTGGTAAAGCATAGAGATGATGATGACCCAGTGGTCTTCCCTGTGAGTTCTTCTCTCAATAGTGAATGTAGTTCAAAGAATTCTACTTCAGTCAATGCTAAAAGGACTAACTCTAGAATGTCCTCATCTGCCAATGAGTCAGGCAGTGCTCATTCTATCGATTCGCCAGTTATTAACTTTAGGGATGACTTTAAAGACGTTAGTTCGACTGTTTCATCAGTTGTCAAAACAATTGCTCTATTAGCTCATATTATCAAGAATCATTCATCCAATAGTATTATAGGAGAGATAGACAGTGGAATTACAACTTGTAAAAAGAATCGTTTTGATTATATTAAAATGATTGGGAATGTATGTTATACGTCTCCTTTTGAACCTACCAGTGTTAATGAGGCTCTAAAAGATGAACAATGGATTGCTGCTATGCAAGAGAATTACTTCAATTTGAACGTGCACAACCATACTAAATATATTGTCATTCACCATCACTTTATGAGGAAATTGGTTGAAACTGAAGTGATTGTTTTAGAGCATGTTCAAAGCTCTCTTCAGTTTGCTGATATTCCCACGAAGCCCTTGAAAGCCACTGTTTCTAAAGATTTACGAGTTGGGATTGGAGTCTTGTCTTCCATCGTCAAAATGGTTTCCACTCGTAAAGGACATTATCGTTATGCTACTTCTATTTCACCTGCTACTACGTCAACTCTTTCTCCCTCAAGCTTTAAGCCTATTATTCCTCCCAAATCTAAACAATTCAAGATAGTCCCTGTTCAAAGTCCATTAAAGCATCTTCGTAGTCAAACTACTTTCTATCAAGCTTCTCTGACGTCTGACTCTTTGCATGATGATGTTGACTCGTCTGTTGGTGCCTCTATGATCCTTTTTCCGTTTCTTTATTTGAACCTCGCTCTTTTATATATTTATCTATATATATATATATATATATTAAATTTGGCTGGTGAAAATTCCTTTGAAACAACGCCGGTGGTGTTGTTCACCGTATACTGA

Protein sequence

MLLHVRGYGHGNLAIGVDAPLQLQESILRTSLRISVSPAQSVNLNVFIHLMADNDFEYIQLLILNIIHFGHVSYTLILDQLDNSPITTIFGLSRHISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLMDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPVSSTSKGTRQSYYSIRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSECSSKNSTSVNAKRTNSRMSSSANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFEPTSVNEALKDEQWIAAMQENYFNLNVHNHTKYIVIHHHFMRKLVETEVIVLEHVQSSLQFADIPTKPLKATVSKDLRVGIGVLSSIVKMVSTRKGHYRYATSISPATTSTLSPSSFKPIIPPKSKQFKIVPVQSPLKHLRSQTTFYQASLTSDSLHDDVDSSVGASMILFPFLYLNLALLYIYLYIYIYILNLAGENSFETTPVVLFTVY

Homology

[Close]

BLAST of MELO.jh101639.1 vs. NCBI nr
Match: TYK31628.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 652 bits (1683), Expect = 2.24e-229
Identity = 337/375 (89.87%), Postives = 342/375 (91.20%), Query Frame = 0


Query: 94  RHISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLL 153
           RHISLSSI KTISVEAALGIPLLK+KSHNFCDECPIGKQIKISHKSVGQCITN VLELLL
Sbjct: 34  RHISLSSIYKTISVEAALGIPLLKSKSHNFCDECPIGKQIKISHKSVGQCITNRVLELLL 93

Query: 154 MDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPVSSTSKGTRQSYYSI 213
           MDLMGPIQVEGL GK                         SSLCPV STSKGTRQSYYSI
Sbjct: 94  MDLMGPIQVEGLSGK-------------------------SSLCPVPSTSKGTRQSYYSI 153

Query: 214 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPS 273
           RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQ+MASVMLHAKSIPS
Sbjct: 154 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQEMASVMLHAKSIPS 213

Query: 274 YFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLGYSTNSKAFKVFNKHT 333
           YFLVKASNI CHIHNCISLHPGMSLTNYQLWKGRKPNIRW DFLGYSTNSKAF+VFNKHT
Sbjct: 214 YFLVKASNIACHIHNCISLHPGMSLTNYQLWKGRKPNIRWRDFLGYSTNSKAFRVFNKHT 273

Query: 334 RTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSECSSKNSTSVNAKRTNSRMSSS 393
           RTVRESIIVVINDTIERLVKHRDDDDP+VFP SSSLNSECSSKNSTSVNAKRTNSRMSSS
Sbjct: 274 RTVRESIIVVINDTIERLVKHRDDDDPMVFPKSSSLNSECSSKNSTSVNAKRTNSRMSSS 333

Query: 394 ANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 453
           ANESGSA SIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT
Sbjct: 334 ANESGSAPSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 383

Query: 454 CKKNRFDYIKMIGNV 468
           CKKNRFDY+KMIGNV
Sbjct: 394 CKKNRFDYVKMIGNV 383

[Close]

BLAST of MELO.jh101639.1 vs. NCBI nr
Match: KAA0032355.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 530 bits (1365), Expect = 5.27e-182
Identity = 287/375 (76.53%), Postives = 292/375 (77.87%), Query Frame = 0


Query: 94  RHISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLL 153
           RHISLSSI KTISVEAALGIPLLK+KSHNFCDECPIGKQIKISHKSVGQCITN VLELLL
Sbjct: 34  RHISLSSIYKTISVEAALGIPLLKSKSHNFCDECPIGKQIKISHKSVGQCITNRVLELLL 93

Query: 154 MDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPVSSTSKGTRQSYYSI 213
           MDLMGPIQVE                                                  
Sbjct: 94  MDLMGPIQVE-------------------------------------------------- 153

Query: 214 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPS 273
                                      ALLIPQQNEVVECKNRTLQ+MASVMLHAKSIPS
Sbjct: 154 ---------------------------ALLIPQQNEVVECKNRTLQEMASVMLHAKSIPS 213

Query: 274 YFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLGYSTNSKAFKVFNKHT 333
           YFLVKASNI CHIHNCISLHPGMSLTNYQLWKGRKPNIRW DFLGYSTNSKAF+VFNKHT
Sbjct: 214 YFLVKASNIACHIHNCISLHPGMSLTNYQLWKGRKPNIRWRDFLGYSTNSKAFRVFNKHT 273

Query: 334 RTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSECSSKNSTSVNAKRTNSRMSSS 393
           RTVRESIIVVINDTIERLVKHRDDDDP+VFP SSSLNSECSSKNSTSVNAKRTNSRMSSS
Sbjct: 274 RTVRESIIVVINDTIERLVKHRDDDDPMVFPKSSSLNSECSSKNSTSVNAKRTNSRMSSS 331

Query: 394 ANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 453
           ANESGSA SIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT
Sbjct: 334 ANESGSAPSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 331

Query: 454 CKKNRFDYIKMIGNV 468
           CKKNRFDY+KMIGNV
Sbjct: 394 CKKNRFDYVKMIGNV 331

[Close]

BLAST of MELO.jh101639.1 vs. NCBI nr
Match: KAA0048721.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (819), Expect = 4.95e-94
Identity = 218/619 (35.22%), Postives = 292/619 (47.17%), Query Frame = 0


Query: 95  HISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLM 154
           H+  ++I K I   A +G+P L   S   C ECP GKQ+K  HK V   +T+ +LELL +
Sbjct: 206 HLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILELLHI 265

Query: 155 DLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCP--VSSTSKGTRQSYYS 214
           DLM P+Q E LG KRYA VCVD+FSRYTW+KFI EK  T   C   V+   +        
Sbjct: 266 DLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNTGIGR 325

Query: 215 IRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIP 274
           IR++HG EFEN  F  F  NEGIFHEFSA L PQ+N VVE +N+TLQ+MA VM+HAK +P
Sbjct: 326 IRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHAKQLP 385

Query: 275 SYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD----------------- 334
             F  +A N  CHIHN + L P  + T+Y+LWKGRKPN+++                   
Sbjct: 386 IQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRDHRRK 445

Query: 335 ---------FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHRDDDDPVVFPVS 394
                    FLGYS N++A++V+N+ T+ V ESI V+I+D  +   ++ DD+D V +   
Sbjct: 446 WDSKSDRGIFLGYSANNRAYRVYNQRTKIVIESINVIIDDLGKEPNRNLDDEDEVFWNSL 505

Query: 395 SSLNSECSSKNSTSVNA-----------KRTNSRMSSSANESGSAHSIDSPVINFRDDFK 454
           S   +E  S+++T  N            K   S  S+S N S +  S ++ V   +   +
Sbjct: 506 SHKTAEGESESTTPTNETTYLPSHFDSNKIDMSTPSTSTNHSNTYES-EAAVSASQHTPE 565

Query: 455 DVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFE 514
             +    S    +    HI KNH  + IIG++ SGI T KK R DY KM+ NVCYT   E
Sbjct: 566 RTAGATDSPKNDLIPPMHIAKNHPFSFIIGDVHSGIITQKKERKDYAKMVANVCYTFSLE 625

Query: 515 PTSVNEALKDEQWIAAMQEN-----------------YFNL------------------- 557
           PT+++  L DE  I AMQE                  Y N+                   
Sbjct: 626 PTTISAVLTDEHLILAMQEELLQFERNQVWELVPKSPYANIIGTKWIFKNKTDEEGRVIC 685

[Close]

BLAST of MELO.jh101639.1 vs. NCBI nr
Match: MCH84708.1 (copia-type polyprotein [Trifolium medium])

HSP 1 Score: 286 bits (732), Expect = 3.06e-86
Identity = 179/422 (42.42%), Postives = 225/422 (53.32%), Query Frame = 0


Query: 103 KTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLMDLMGPIQV 162
           K IS EA  G+P LK + +N C EC IGKQ K+SH+ +    T  V ELL MDLMGP+QV
Sbjct: 3   KAISEEAIRGLPKLKIEENNICGECQIGKQTKMSHQKLQHLTTTRVFELLHMDLMGPMQV 62

Query: 163 EGLGGKRYAFVCVDNFSRYTWVKFIREKSNT----SSLCPVSSTSKGTRQSYYSIRSDHG 222
           E LGGKRYA+V VD+FSRYTWV FIREK +T      LC      K +      IRSDHG
Sbjct: 63  ESLGGKRYAYVVVDDFSRYTWVNFIREKYDTFDVFKDLCIQLQREKDSV--ILRIRSDHG 122

Query: 223 HEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVK 282
            EFEN+ F  F  +EGI HEFS+ + PQQN VVE KNRTLQ+ A VMLH K +P  F  +
Sbjct: 123 KEFENSKFSEFXASEGIMHEFSSPITPQQNGVVERKNRTLQESARVMLHTKKLPYVFCAE 182

Query: 283 ASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD----------------------- 342
           A N  C+IHN ++L  G + T Y+LWK +KP +++                         
Sbjct: 183 ALNTACYIHNRVTLRSGTATTLYELWKNKKPTVKYFHVFGSKCYILANREQRRKFDPKSD 242

Query: 343 ---FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSE 402
              F+GYSTNS+A++VFN  T+T+ ESI VVI+D+ E  V    DD     P   +   E
Sbjct: 243 EGIFMGYSTNSRAYRVFNSITKTMMESINVVIDDSAEEKVTDVADDAVASDPHYDAPEIE 302

Query: 403 CSSKNSTSVNAKRTNSRMSSSANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLA 462
              +          NS +S+S  ES +A     P I  +                     
Sbjct: 303 KEPEG---------NSEISNS--ESNTAPPKKGPSIRVQ--------------------- 362

Query: 463 HIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFEPTSVNEALKDEQWIAAM 494
              KNH    IIG  D GI T + N      ++ N C+ S FEP +V EAL DE WI AM
Sbjct: 363 ---KNHPQELIIGNHDQGIATRRTN-----DLVSNSCFVSKFEPKNVKEALTDEFWINAM 382

[Close]

BLAST of MELO.jh101639.1 vs. NCBI nr
Match: KAA0036855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 289 bits (739), Expect = 3.90e-84
Identity = 175/423 (41.37%), Postives = 234/423 (55.32%), Query Frame = 0


Query: 95  HISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLM 154
           HISL S+ K I  EA +GIP L      FC  C +GKQ K SH+ + +C T  VLELL +
Sbjct: 256 HISLRSLDKVIRNEAVVGIPSLDINGKFFCGNCQVGKQTKTSHRRLKECYTISVLELLHL 315

Query: 155 DLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTS----SLCPVSSTSKGTRQSY 214
           +LMGP+Q E LGGK+Y  V VD++S++TWV+F++EK +T     SLC      KG  Q  
Sbjct: 316 NLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKG--QKI 375

Query: 215 YSIRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKS 274
             IRSDHG EF+N   +N    EGI HEF+A + PQQN VVE KNR LQ+MA VM+HAK+
Sbjct: 376 IRIRSDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKN 435

Query: 275 IPSYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD--------------- 334
            P  F  +  N  CHIH  ++   G ++T Y+LWKGRKPN+++                 
Sbjct: 436 FPLNFWAEVVNTACHIHKRVTTRFGTTITLYELWKGRKPNVKYFHIFGSTCYILADREYH 495

Query: 335 -----------FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHR-DDDDPVVF 394
                      FL YS NS+A++VFN  + TV E I VV+ND    + +   +DD+  V 
Sbjct: 496 RKWDVKSNQGIFLSYSQNSRAYRVFNIKSGTVMEKINVVVNDFESNVNQFNFEDDETYVT 555

Query: 395 PVSSSLNSECSSKNSTSVNAKRTNSRMSSSANESGSAHSIDSPVINFRDDFKDVSSTVSS 454
           P  +    +   K     N+ + NS              I   VIN        + TV  
Sbjct: 556 PDVTFTPLDEMPKGDLQPNSAKANSN-------------ITDEVIN--------NETV-- 615

Query: 455 VVKTIALLAHIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFEPTSVNEAL 486
               +   AH+ KNH S+SIIG++ +GITT +K + DY+KMI ++CY S  EP SV  AL
Sbjct: 616 ----VFPSAHVKKNHPSSSIIGDLSAGITTRRKEKVDYMKMIADLCYESAIEPISVENAL 649

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.7e-16
Identity = 49/167 (29.34%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 124 CDECPIGKQIKISHKSVGQCITNCVLELLLMDLMGPIQVEGLGGKRYAFVCVDNFSRYTW 183
           CD C  GKQ ++S ++  +   N +L+L+  D+ GP+++E +GG +Y    +D+ SR  W
Sbjct: 457 CDYCLFGKQHRVSFQTSSERKLN-ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLW 516

Query: 184 VKFIREKSNTSSLCPV--SSTSKGTRQSYYSIRSDHGHEFENTTFDNFRVNEGIFHEFSA 243
           V  ++ K     +     +   + T +    +RSD+G E+ +  F+ +  + GI HE + 
Sbjct: 517 VYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTV 576

Query: 244 LLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVKASNITCHIHN 289
              PQ N V E  NRT+ +    ML    +P  F  +A    C++ N
Sbjct: 577 PGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLIN 622

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-08
Identity = 51/204 (25.00%), Postives = 86/204 (42.16%), Query Frame = 0


Query: 120 SHNFCDECPIGKQIKISHKSV-GQCITNCVLELLLMDLMGPIQVEGLGGKRYAFVCVDNF 179
           S   C+ C  GKQ ++  K +  +      L ++  D+ GPI    L  K Y  + VD F
Sbjct: 451 SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQF 510

Query: 180 SRYTWVKFIREKSNTSSLCP--VSSTSKGTRQSYYSIRSDHGHEFENTTFDNFRVNEGIF 239
           + Y     I+ KS+  S+    V+ +          +  D+G E+ +     F V +GI 
Sbjct: 511 THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGIS 570

Query: 240 HEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVKASNITCHIHNCISLHP-- 299
           +  +    PQ N V E   RT+ + A  M+    +   F  +A     ++ N I      
Sbjct: 571 YHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALV 630

Query: 300 GMSLTNYQLWKGRKPNIRWMDFLG 319
             S T Y++W  +KP ++ +   G
Sbjct: 631 DSSKTPYEMWHNKKPYLKHLRVFG 654

HSP 2 Score: 45.1 bits (105), Expect = 3.8e-03
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 498  NLNVHNHTKYIVIHHHFMRKLVETEVIVLEHVQSSLQFADIPTKPLKATVSKDLRVGIGV 557
            N + H   K+I I +HF R+ V+  VI LE++ +  Q ADI TKPL A    +LR  +G+
Sbjct: 1341 NPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

Query: 558  L 559
            L
Sbjct: 1401 L 1401

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-06
Identity = 55/228 (24.12%), Postives = 99/228 (43.42%), Query Frame = 0


Query: 95  HISLSSICKTISVEAALGIPLLKAKSHNF--CDECPIGKQIKISHKSVGQCITNCVLELL 154
           H SL+ +   IS  +   +P+L   SH    C +C I K  K+   S     ++  LE +
Sbjct: 452 HPSLAILNSVISNHS---LPVLN-PSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYI 511

Query: 155 LMDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPV--SSTSKGTRQSY 214
             D+     +  +   RY  + VD+F+RYTW+  +++KS       +  S      +   
Sbjct: 512 YSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRI 571

Query: 215 YSIRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKS 274
            ++ SD+G EF      ++    GI H  S    P+ N + E K+R + +M   +L   S
Sbjct: 572 GTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHAS 631

Query: 275 IPSYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLG 319
           +P  +   A ++  ++ N +        + +Q   G+ PN   +   G
Sbjct: 632 VPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFG 671

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-04
Identity = 63/253 (24.90%), Postives = 98/253 (38.74%), Query Frame = 0


Query: 79  DQLDNSPITTIFGLSRHISLSSICKTISVEAALGIPL--------------LKAKSHNF- 138
           D+L   PI +   +S   S SS     S  A LG P               +   SH F 
Sbjct: 439 DELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFL 498

Query: 139 -CDECPIGKQIKISHKSVGQCITNCVLELLLMDLMGPIQVEGLGGKRYAFVCVDNFSRYT 198
            C +C I K  K+   S     +   LE +  D+     +      RY  + VD+F+RYT
Sbjct: 499 SCSDCLINKSNKVPF-SQSTINSTRPLEYIYSDVWSS-PILSHDNYRYYVIFVDHFTRYT 558

Query: 199 WVKFIREKSNTSSLCPVSSTSKGTRQSYYSIR-----SDHGHEFENTTFDNFRVNEGIFH 258
           W+  +++KS          T K   ++ +  R     SD+G EF       +    GI H
Sbjct: 559 WLYPLKQKSQVKE---TFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISH 618

Query: 259 EFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVKASNITCHIHNCISLHPGMS 311
             S    P+ N + E K+R + +    +L   SIP  +   A  +  ++ N +       
Sbjct: 619 LTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQL 678

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL
Match: A0A5D3E708 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00180 PE=4 SV=1)

HSP 1 Score: 652 bits (1683), Expect = 1.08e-229
Identity = 337/375 (89.87%), Postives = 342/375 (91.20%), Query Frame = 0


Query: 94  RHISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLL 153
           RHISLSSI KTISVEAALGIPLLK+KSHNFCDECPIGKQIKISHKSVGQCITN VLELLL
Sbjct: 34  RHISLSSIYKTISVEAALGIPLLKSKSHNFCDECPIGKQIKISHKSVGQCITNRVLELLL 93

Query: 154 MDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPVSSTSKGTRQSYYSI 213
           MDLMGPIQVEGL GK                         SSLCPV STSKGTRQSYYSI
Sbjct: 94  MDLMGPIQVEGLSGK-------------------------SSLCPVPSTSKGTRQSYYSI 153

Query: 214 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPS 273
           RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQ+MASVMLHAKSIPS
Sbjct: 154 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQEMASVMLHAKSIPS 213

Query: 274 YFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLGYSTNSKAFKVFNKHT 333
           YFLVKASNI CHIHNCISLHPGMSLTNYQLWKGRKPNIRW DFLGYSTNSKAF+VFNKHT
Sbjct: 214 YFLVKASNIACHIHNCISLHPGMSLTNYQLWKGRKPNIRWRDFLGYSTNSKAFRVFNKHT 273

Query: 334 RTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSECSSKNSTSVNAKRTNSRMSSS 393
           RTVRESIIVVINDTIERLVKHRDDDDP+VFP SSSLNSECSSKNSTSVNAKRTNSRMSSS
Sbjct: 274 RTVRESIIVVINDTIERLVKHRDDDDPMVFPKSSSLNSECSSKNSTSVNAKRTNSRMSSS 333

Query: 394 ANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 453
           ANESGSA SIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT
Sbjct: 334 ANESGSAPSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 383

Query: 454 CKKNRFDYIKMIGNV 468
           CKKNRFDY+KMIGNV
Sbjct: 394 CKKNRFDYVKMIGNV 383

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL
Match: A0A5A7ST13 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002210 PE=4 SV=1)

HSP 1 Score: 530 bits (1365), Expect = 2.55e-182
Identity = 287/375 (76.53%), Postives = 292/375 (77.87%), Query Frame = 0


Query: 94  RHISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLL 153
           RHISLSSI KTISVEAALGIPLLK+KSHNFCDECPIGKQIKISHKSVGQCITN VLELLL
Sbjct: 34  RHISLSSIYKTISVEAALGIPLLKSKSHNFCDECPIGKQIKISHKSVGQCITNRVLELLL 93

Query: 154 MDLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCPVSSTSKGTRQSYYSI 213
           MDLMGPIQVE                                                  
Sbjct: 94  MDLMGPIQVE-------------------------------------------------- 153

Query: 214 RSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPS 273
                                      ALLIPQQNEVVECKNRTLQ+MASVMLHAKSIPS
Sbjct: 154 ---------------------------ALLIPQQNEVVECKNRTLQEMASVMLHAKSIPS 213

Query: 274 YFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMDFLGYSTNSKAFKVFNKHT 333
           YFLVKASNI CHIHNCISLHPGMSLTNYQLWKGRKPNIRW DFLGYSTNSKAF+VFNKHT
Sbjct: 214 YFLVKASNIACHIHNCISLHPGMSLTNYQLWKGRKPNIRWRDFLGYSTNSKAFRVFNKHT 273

Query: 334 RTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSECSSKNSTSVNAKRTNSRMSSS 393
           RTVRESIIVVINDTIERLVKHRDDDDP+VFP SSSLNSECSSKNSTSVNAKRTNSRMSSS
Sbjct: 274 RTVRESIIVVINDTIERLVKHRDDDDPMVFPKSSSLNSECSSKNSTSVNAKRTNSRMSSS 331

Query: 394 ANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 453
           ANESGSA SIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT
Sbjct: 334 ANESGSAPSIDSPVINFRDDFKDVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITT 331

Query: 454 CKKNRFDYIKMIGNV 468
           CKKNRFDY+KMIGNV
Sbjct: 394 CKKNRFDYVKMIGNV 331

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL
Match: A0A5D3C9Q6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00180 PE=4 SV=1)

HSP 1 Score: 320 bits (819), Expect = 2.40e-94
Identity = 218/619 (35.22%), Postives = 292/619 (47.17%), Query Frame = 0


Query: 95  HISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLM 154
           H+  ++I K I   A +G+P L   S   C ECP GKQ+K  HK V   +T+ +LELL +
Sbjct: 206 HLGGATISKVIKANAIIGLPPLSFSSLESCSECPAGKQVKSVHKPVNISLTSHILELLHI 265

Query: 155 DLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTSSLCP--VSSTSKGTRQSYYS 214
           DLM P+Q E LG KRYA VCVD+FSRYTW+KFI EK  T   C   V+   +        
Sbjct: 266 DLMRPMQTESLGRKRYAVVCVDDFSRYTWIKFILEKLETFKTCQTLVTQLQREKNTGIGR 325

Query: 215 IRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIP 274
           IR++HG EFEN  F  F  NEGIFHEFSA L PQ+N VVE +N+TLQ+MA VM+HAK +P
Sbjct: 326 IRTEHGCEFENKHFAEFCDNEGIFHEFSAQLTPQENGVVEKRNQTLQEMARVMIHAKQLP 385

Query: 275 SYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD----------------- 334
             F  +A N  CHIHN + L P  + T+Y+LWKGRKPN+++                   
Sbjct: 386 IQFWAEALNTACHIHNRVILRPRTTTTSYELWKGRKPNVKYFHIFGGTCFILSDRDHRRK 445

Query: 335 ---------FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHRDDDDPVVFPVS 394
                    FLGYS N++A++V+N+ T+ V ESI V+I+D  +   ++ DD+D V +   
Sbjct: 446 WDSKSDRGIFLGYSANNRAYRVYNQRTKIVIESINVIIDDLGKEPNRNLDDEDEVFWNSL 505

Query: 395 SSLNSECSSKNSTSVNA-----------KRTNSRMSSSANESGSAHSIDSPVINFRDDFK 454
           S   +E  S+++T  N            K   S  S+S N S +  S ++ V   +   +
Sbjct: 506 SHKTAEGESESTTPTNETTYLPSHFDSNKIDMSTPSTSTNHSNTYES-EAAVSASQHTPE 565

Query: 455 DVSSTVSSVVKTIALLAHIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFE 514
             +    S    +    HI KNH  + IIG++ SGI T KK R DY KM+ NVCYT   E
Sbjct: 566 RTAGATDSPKNDLIPPMHIAKNHPFSFIIGDVHSGIITQKKERKDYAKMVANVCYTFSLE 625

Query: 515 PTSVNEALKDEQWIAAMQEN-----------------YFNL------------------- 557
           PT+++  L DE  I AMQE                  Y N+                   
Sbjct: 626 PTTISAVLTDEHLILAMQEELLQFERNQVWELVPKSPYANIIGTKWIFKNKTDEEGRVIC 685

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL
Match: A0A392MD63 (Copia-type polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0005543 PE=4 SV=1)

HSP 1 Score: 286 bits (732), Expect = 1.48e-86
Identity = 179/422 (42.42%), Postives = 225/422 (53.32%), Query Frame = 0


Query: 103 KTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLMDLMGPIQV 162
           K IS EA  G+P LK + +N C EC IGKQ K+SH+ +    T  V ELL MDLMGP+QV
Sbjct: 3   KAISEEAIRGLPKLKIEENNICGECQIGKQTKMSHQKLQHLTTTRVFELLHMDLMGPMQV 62

Query: 163 EGLGGKRYAFVCVDNFSRYTWVKFIREKSNT----SSLCPVSSTSKGTRQSYYSIRSDHG 222
           E LGGKRYA+V VD+FSRYTWV FIREK +T      LC      K +      IRSDHG
Sbjct: 63  ESLGGKRYAYVVVDDFSRYTWVNFIREKYDTFDVFKDLCIQLQREKDSV--ILRIRSDHG 122

Query: 223 HEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKSIPSYFLVK 282
            EFEN+ F  F  +EGI HEFS+ + PQQN VVE KNRTLQ+ A VMLH K +P  F  +
Sbjct: 123 KEFENSKFSEFXASEGIMHEFSSPITPQQNGVVERKNRTLQESARVMLHTKKLPYVFCAE 182

Query: 283 ASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD----------------------- 342
           A N  C+IHN ++L  G + T Y+LWK +KP +++                         
Sbjct: 183 ALNTACYIHNRVTLRSGTATTLYELWKNKKPTVKYFHVFGSKCYILANREQRRKFDPKSD 242

Query: 343 ---FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHRDDDDPVVFPVSSSLNSE 402
              F+GYSTNS+A++VFN  T+T+ ESI VVI+D+ E  V    DD     P   +   E
Sbjct: 243 EGIFMGYSTNSRAYRVFNSITKTMMESINVVIDDSAEEKVTDVADDAVASDPHYDAPEIE 302

Query: 403 CSSKNSTSVNAKRTNSRMSSSANESGSAHSIDSPVINFRDDFKDVSSTVSSVVKTIALLA 462
              +          NS +S+S  ES +A     P I  +                     
Sbjct: 303 KEPEG---------NSEISNS--ESNTAPPKKGPSIRVQ--------------------- 362

Query: 463 HIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFEPTSVNEALKDEQWIAAM 494
              KNH    IIG  D GI T + N      ++ N C+ S FEP +V EAL DE WI AM
Sbjct: 363 ---KNHPQELIIGNHDQGIATRRTN-----DLVSNSCFVSKFEPKNVKEALTDEFWINAM 382

[Close]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL
Match: A0A5D3BA69 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002290 PE=4 SV=1)

HSP 1 Score: 289 bits (739), Expect = 1.89e-84
Identity = 175/423 (41.37%), Postives = 234/423 (55.32%), Query Frame = 0


Query: 95  HISLSSICKTISVEAALGIPLLKAKSHNFCDECPIGKQIKISHKSVGQCITNCVLELLLM 154
           HISL S+ K I  EA +GIP L      FC  C +GKQ K SH+ + +C T  VLELL +
Sbjct: 256 HISLRSLDKVIRNEAVVGIPSLDINGKFFCGNCQVGKQTKTSHRRLKECYTISVLELLHL 315

Query: 155 DLMGPIQVEGLGGKRYAFVCVDNFSRYTWVKFIREKSNTS----SLCPVSSTSKGTRQSY 214
           +LMGP+Q E LGGK+Y  V VD++S++TWV+F++EK +T     SLC      KG  Q  
Sbjct: 316 NLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKG--QKI 375

Query: 215 YSIRSDHGHEFENTTFDNFRVNEGIFHEFSALLIPQQNEVVECKNRTLQDMASVMLHAKS 274
             IRSDHG EF+N   +N    EGI HEF+A + PQQN VVE KNR LQ+MA VM+HAK+
Sbjct: 376 IRIRSDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKN 435

Query: 275 IPSYFLVKASNITCHIHNCISLHPGMSLTNYQLWKGRKPNIRWMD--------------- 334
            P  F  +  N  CHIH  ++   G ++T Y+LWKGRKPN+++                 
Sbjct: 436 FPLNFWAEVVNTACHIHKRVTTRFGTTITLYELWKGRKPNVKYFHIFGSTCYILADREYH 495

Query: 335 -----------FLGYSTNSKAFKVFNKHTRTVRESIIVVINDTIERLVKHR-DDDDPVVF 394
                      FL YS NS+A++VFN  + TV E I VV+ND    + +   +DD+  V 
Sbjct: 496 RKWDVKSNQGIFLSYSQNSRAYRVFNIKSGTVMEKINVVVNDFESNVNQFNFEDDETYVT 555

Query: 395 PVSSSLNSECSSKNSTSVNAKRTNSRMSSSANESGSAHSIDSPVINFRDDFKDVSSTVSS 454
           P  +    +   K     N+ + NS              I   VIN        + TV  
Sbjct: 556 PDVTFTPLDEMPKGDLQPNSAKANSN-------------ITDEVIN--------NETV-- 615

Query: 455 VVKTIALLAHIIKNHSSNSIIGEIDSGITTCKKNRFDYIKMIGNVCYTSPFEPTSVNEAL 486
               +   AH+ KNH S+SIIG++ +GITT +K + DY+KMI ++CY S  EP SV  AL
Sbjct: 616 ----VFPSAHVKKNHPSSSIIGDLSAGITTRRKEKVDYMKMIADLCYESAIEPISVENAL 649

The following BLAST results are available for this feature:

BLAST of MELO.jh101639.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31628.1	2.24e-229	89.87	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032355.1	5.27e-182	76.53	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048721.1	4.95e-94	35.22	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [...	[more]
MCH84708.1	3.06e-86	42.42	copia-type polyprotein [Trifolium medium]	[more]
KAA0036855.1	3.90e-84	41.37	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [...	[more]

BLAST of MELO.jh101639.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.7e-16	29.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.0e-08	25.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.7e-06	24.12	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.5e-04	24.90	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E708	1.08e-229	89.87	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G...	[more]
A0A5A7ST13	2.55e-182	76.53	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G...	[more]
A0A5D3C9Q6	2.40e-94	35.22	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G...	[more]
A0A392MD63	1.48e-86	42.42	Copia-type polyprotein OS=Trifolium medium OX=97028 GN=A2U01_0005543 PE=4 SV=1	[more]
A0A5D3BA69	1.89e-84	41.37	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]

BLAST of MELO.jh101639.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 144..341 e-value: 1.5E-26 score: 95.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..402
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 137..308 score: 15.404733
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 149..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101639.1.t1	MELO.jh101639.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding