MELO.jh101623.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101623.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pol protein
Location	chr05: 11756057 .. 11756530 (-)
RNA-Seq Expression	MELO.jh101623.1
Synteny	MELO.jh101623.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAGATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTCCATGGAGTGCCGGTGTCGATCGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCGCAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGA

mRNA sequence

ATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAGATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTCCATGGAGTGCCGGTGTCGATCGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCGCAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGA

Coding sequence (CDS)

ATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAGATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTCCATGGAGTGCCGGTGTCGATCGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCGCAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGA

Protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC

Homology

[Close]

BLAST of MELO.jh101623.1 vs. NCBI nr
Match: KAA0043143.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (838), Expect = 7.78e-113
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVVEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. NCBI nr
Match: KAA0041424.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (841), Expect = 1.10e-110
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (838), Expect = 1.27e-109
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 163

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVC
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVC 200

[Close]

BLAST of MELO.jh101623.1 vs. NCBI nr
Match: KAA0050749.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (830), Expect = 1.72e-109
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR  GVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLQGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNN+YQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNNYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (834), Expect = 2.07e-109
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPDSW 163

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 200

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 8.7e-28
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
            MDF+TGLP T     +I VVVDR +K AHF+  R T  A++   L    I  +HG P +I
Sbjct: 1174 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1233

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
             SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA A     +W
Sbjct: 1234 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW 1293

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP 156
              +L  +EF YN++   T+G +PFE   G    +P
Sbjct: 1294 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1328

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-27
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
            MDF+TGLP T     +I VVVDR +K AHF+  R T  A++   L    I  +HG P +I
Sbjct: 1200 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1259

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
             SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA       +W
Sbjct: 1260 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW 1319

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSP 156
              +L  +EF YN++   T+G +PFE   G    +P
Sbjct: 1320 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1354

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-27
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++ + G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-27
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++ + G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.6e-27
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++ + G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL
Match: A0A5A7TIG2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36818G00010 PE=4 SV=1)

HSP 1 Score: 327 bits (838), Expect = 3.77e-113
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQV+EDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVVEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL
Match: A0A5A7TDB5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 PE=4 SV=1)

HSP 1 Score: 328 bits (841), Expect = 5.31e-111
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL
Match: A0A5A7TPA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 PE=4 SV=1)

HSP 1 Score: 327 bits (838), Expect = 6.13e-110
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 163

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVC
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVC 200

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL
Match: A0A5A7UB52 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26259G00010 PE=4 SV=1)

HSP 1 Score: 324 bits (830), Expect = 8.33e-110
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR  GVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLQGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNN+YQATIGMAPFEALYGKCCRSPVC
Sbjct: 121 DSHLHLMEFAYNNNYQATIGMAPFEALYGKCCRSPVC 157

[Close]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 325 bits (834), Expect = 1.00e-109
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGRSTYTASKWAQLYMSEIVRFHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPG+STYTASKWAQLYMSEIVR HGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPDSW 163

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 157
           DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVC 200

The following BLAST results are available for this feature:

BLAST of MELO.jh101623.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043143.1	7.78e-113	98.09	pol protein [Cucumis melo var. makuwa]	[more]
KAA0041424.1	1.10e-110	98.73	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043401.1	1.27e-109	98.09	pol protein [Cucumis melo var. makuwa]	[more]
KAA0050749.1	1.72e-109	97.45	pol protein [Cucumis melo var. makuwa]	[more]
KAA0068212.1	2.07e-109	98.09	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh101623.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.7e-28	41.94	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.5e-27	41.29	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	9.6e-27	38.51	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.6e-27	38.51	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.6e-27	38.51	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIG2	3.77e-113	98.09	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36818G00010 ...	[more]
A0A5A7TDB5	5.31e-111	98.73	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 ...	[more]
A0A5A7TPA9	6.13e-110	98.09	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 ...	[more]
A0A5A7UB52	8.33e-110	97.45	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26259G00010 ...	[more]
A0A5A7VIQ0	1.00e-109	98.09	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]

BLAST of MELO.jh101623.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..157 e-value: 5.2E-43 score: 148.6
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..145
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.22897
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101623.1.t1	MELO.jh101623.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding