MELO.jh101610.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101610.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	DNA-directed RNA polymerase subunit beta'
Location	chr05: 9705646 .. 9706479 (-)
RNA-Seq Expression	MELO.jh101610.1
Synteny	MELO.jh101610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAA

mRNA sequence

ATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAA

Coding sequence (CDS)

ATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCTTTATCTTTGGAGGCTCAAGCGGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGCCATTTTTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAA

Protein sequence

MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSSAIGPFLYQLKICLLDSMY

Homology

[Close]

BLAST of MELO.jh101610.1 vs. NCBI nr
Match: CAB4267842.1 (unnamed protein product [Prunus armeniaca] >CAB4274717.1 unnamed protein product [Prunus armeniaca] >CAB4314295.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 513 bits (1321), Expect = 9.89e-182
Identity = 256/262 (97.71%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL E
Sbjct: 121 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHE 180

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSL 240

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 241 EAQAEARLLMFSHMNLLSPAIG 262

[Close]

BLAST of MELO.jh101610.1 vs. NCBI nr
Match: YP_009526523.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54282.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 511 bits (1317), Expect = 5.18e-181
Identity = 254/262 (96.95%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 17  MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 76

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 77  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGRFRETLLGKRVDYSGRSV 136

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR+HFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 137 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHFASNIGVAKSKIREKEPIVWEILQE 196

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           +MQGHPVLLNRAPTLHRLGIQAFQPIL+EGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 197 IMQGHPVLLNRAPTLHRLGIQAFQPILIEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 256

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSH NLLS AIG
Sbjct: 257 EAQAEARLLMFSHTNLLSPAIG 278

[Close]

BLAST of MELO.jh101610.1 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria])

HSP 1 Score: 520 bits (1340), Expect = 2.06e-180
Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLSSAIG
Sbjct: 504 EAQAEARLLMFSHMNLLSSAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. NCBI nr
Match: QGA85006.1 (RNA polymerase beta subunit, partial [Hymenostegia felicis])

HSP 1 Score: 516 bits (1328), Expect = 2.28e-180
Identity = 258/262 (98.47%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 227 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 286

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 287 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 346

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR+HFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 347 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHFASNIGVAKSKIREKEPIVWEILQE 406

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 407 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 466

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 467 EAQAEARLLMFSHMNLLSPAIG 488

[Close]

BLAST of MELO.jh101610.1 vs. NCBI nr
Match: AGJ74937.1 (RNA polymerase beta' subunit protein, partial [Oxalis stricta])

HSP 1 Score: 506 bits (1303), Expect = 1.19e-179
Identity = 255/262 (97.33%), Postives = 257/262 (98.09%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 16  MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 75

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 76  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 135

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IR LIRQH ASNIGVAKSKIREKEPIVWEILQE
Sbjct: 136 IVVGPSLSLHRCGLPREIAIELFQTFVIRSLIRQHLASNIGVAKSKIREKEPIVWEILQE 195

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVH+PLSL
Sbjct: 196 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSL 255

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 256 EAQAEARLLMFSHMNLLSPAIG 277

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 521.9 bits (1343), Expect = 4.3e-147
Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQAEARLLMFSHMNLLSSAIG
Sbjct: 504 EAQAEARLLMFSHMNLLSSAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot
Match: Q8HVY4 (DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 515.4 bits (1326), Expect = 4.0e-145
Identity = 256/262 (97.71%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 266 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 325

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 326 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSV 385

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR+HFASNIG+AKSKIREKEPIVWEILQE
Sbjct: 386 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGIAKSKIREKEPIVWEILQE 445

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 446 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 505

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQAEARLLMFSH NLLS AIG
Sbjct: 506 EAQAEARLLMFSHTNLLSPAIG 527

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 512.7 bits (1319), Expect = 2.6e-144
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQ EARLLMFSHMNLLS AIG
Sbjct: 504 EAQVEARLLMFSHMNLLSPAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot
Match: Q3C1G8 (DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris OX=4096 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 512.7 bits (1319), Expect = 2.6e-144
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQ EARLLMFSHMNLLS AIG
Sbjct: 504 EAQVEARLLMFSHMNLLSPAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot
Match: Q2MIJ6 (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum OX=147425 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 512.7 bits (1319), Expect = 2.6e-144
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQ EARLLMFSHMNLLS AIG
Sbjct: 504 EAQVEARLLMFSHMNLLSPAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL
Match: A0A6J5TVP8 (DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10750 PE=3 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 4.79e-182
Identity = 256/262 (97.71%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEIL E
Sbjct: 121 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHE 180

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSL 240

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 241 EAQAEARLLMFSHMNLLSPAIG 262

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL
Match: A0A385G259 (DNA-directed RNA polymerase subunit OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp6 PE=3 SV=1)

HSP 1 Score: 511 bits (1317), Expect = 2.51e-181
Identity = 254/262 (96.95%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 17  MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 76

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 77  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLIEGKEGRFRETLLGKRVDYSGRSV 136

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR+HFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 137 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHFASNIGVAKSKIREKEPIVWEILQE 196

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           +MQGHPVLLNRAPTLHRLGIQAFQPIL+EGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 197 IMQGHPVLLNRAPTLHRLGIQAFQPILIEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 256

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSH NLLS AIG
Sbjct: 257 EAQAEARLLMFSHTNLLSPAIG 278

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL
Match: X2F6R9 (DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria OX=3668 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 520 bits (1340), Expect = 9.99e-181
Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLSSAIG
Sbjct: 504 EAQAEARLLMFSHMNLLSSAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL
Match: A0A5Q0UU49 (DNA-directed RNA polymerase subunit (Fragment) OS=Hymenostegia felicis OX=162801 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 516 bits (1328), Expect = 1.10e-180
Identity = 258/262 (98.47%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC
Sbjct: 227 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 286

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 287 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 346

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR+HFASNIGVAKSKIREKEPIVWEILQE
Sbjct: 347 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHFASNIGVAKSKIREKEPIVWEILQE 406

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 407 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 466

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 467 EAQAEARLLMFSHMNLLSPAIG 488

[Close]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL
Match: M1CW95 (DNA-directed RNA polymerase subunit OS=Solanum tuberosum OX=4113 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 511 bits (1316), Expect = 4.68e-180
Identity = 255/262 (97.33%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 60

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQE
Sbjct: 121 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQE 180

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 181 VMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 240

Query: 241 EAQAEARLLMFSHMNLLSSAIG 262
           EAQ EARLLMFSHMNLLS AIG
Sbjct: 241 EAQVEARLLMFSHMNLLSPAIG 262

[Close]

BLAST of MELO.jh101610.1 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 507.3 bits (1305), Expect = 7.8e-144
Identity = 252/262 (96.18%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           MVLCLLPVLPPELRPIIQI+GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 61  QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 120
           QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSV 383

Query: 121 IVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQE 180
           IVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQE
Sbjct: 384 IVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQE 443

Query: 181 VMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHLPLSL 240
           VMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVH+PLSL
Sbjct: 444 VMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSL 503

Query: 241 EAQAEARLLMFSHMNLLSSAIG 263
           EAQAEARLLMFSHMNLLS AIG
Sbjct: 504 EAQAEARLLMFSHMNLLSPAIG 525

[Close]

BLAST of MELO.jh101610.1 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-24
Identity = 78/277 (28.16%), Postives = 127/277 (45.85%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           M+L +LP+ PP +RP + +D       D+      +I  N  L          P  ++  
Sbjct: 245 MILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHIISE 304

Query: 61  QEKLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS 120
             +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S R+
Sbjct: 305 FTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 364

Query: 121 VIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIRE 180
           VI   P++++   G+P  IA+ L        +    ++ L+    H       AK  IR+
Sbjct: 365 VITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRD 424

Query: 181 KE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 240
                              + +++ + +  G  VL NR P+LH++ I   +  ++     
Sbjct: 425 DGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTF 484

Query: 241 CLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLM 251
            L+  V   +NADFDGD+M +H+P S E +AE   LM
Sbjct: 485 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 519

[Close]

BLAST of MELO.jh101610.1 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-24
Identity = 83/290 (28.62%), Postives = 141/290 (48.62%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           ++ C+L V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + + 
Sbjct: 254 IITCML-VPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVW 313

Query: 61  QEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS 120
               VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++GR+
Sbjct: 314 D--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFTGRT 373

Query: 121 VIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN------- 180
           VI   P+L +   G+P  +A             IE  +  +  G  +   A N       
Sbjct: 374 VISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGS 433

Query: 181 ----IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 240
               +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  
Sbjct: 434 SRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 493

Query: 241 HPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSSAIGPFL 266
           +  VC  +NADFDGD+M +H+P + EA+ EA  LM    NL +   G  L
Sbjct: 494 NESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 538

[Close]

BLAST of MELO.jh101610.1 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-24
Identity = 83/290 (28.62%), Postives = 141/290 (48.62%), Query Frame = 0


Query: 1   MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMC 60
           ++ C+L V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + + 
Sbjct: 264 IITCML-VPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVW 323

Query: 61  QEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS 120
               VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++GR+
Sbjct: 324 D--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFTGRT 383

Query: 121 VIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN------- 180
           VI   P+L +   G+P  +A             IE  +  +  G  +   A N       
Sbjct: 384 VISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGS 443

Query: 181 ----IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 240
               +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R +  
Sbjct: 444 SRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRF 503

Query: 241 HPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSSAIGPFL 266
           +  VC  +NADFDGD+M +H+P + EA+ EA  LM    NL +   G  L
Sbjct: 504 NESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 548

[Close]

BLAST of MELO.jh101610.1 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-14
Identity = 72/289 (24.91%), Postives = 130/289 (44.98%), Query Frame = 0


Query: 3   LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVI-YRNNTLIDLLTTSRSTPGELV 62
           L   PV P   R    + Q +G +L+  +   +Y++++ +  NTL             ++
Sbjct: 220 LTSFPVTPNGYRVTEIVHQFNGARLIFDERTRIYKKLVGFEGNTL--------ELSSRVM 279

Query: 63  MCQE--KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRF-RETLLGKRVDY 122
            C +  +L  E V +  D+              Y+  SD  +    RF ++ LLGKR D+
Sbjct: 280 ECMQYSRLFSETVSSSKDSA-----------NPYQKKSDTPKLCGLRFMKDVLLGKRSDH 339

Query: 123 SGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN-----IGVAKSKIREK 182
           + R+V+V  PSL L+  G+P  IA  L  +  +    ++   ++     +   +  +R  
Sbjct: 340 TFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDNKEMHVRRG 399

Query: 183 EPIVW----------EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGRAICLHPLV 242
           + +V           +I + +M G  VL+NR P++H+  + A    IL     + L+P+ 
Sbjct: 400 DRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTSVVSLNPIC 459

Query: 243 CKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSSAIGPFLYQL 269
           C  F  DFDGD +  ++P S++A+ E   L+     L++   G  L  L
Sbjct: 460 CLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSL 489

The following BLAST results are available for this feature:

BLAST of MELO.jh101610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4267842.1	9.89e-182	97.71	unnamed protein product [Prunus armeniaca] >CAB4274717.1 unnamed protein product...	[more]
YP_009526523.1	5.18e-181	96.95	hypothetical protein [Ammopiptanthus mongolicus] >AXV54282.1 hypothetical protei...	[more]
AHM91152.1	2.06e-180	99.62	RNA polymerase beta, partial [Lagenaria siceraria]	[more]
QGA85006.1	2.28e-180	98.47	RNA polymerase beta subunit, partial [Hymenostegia felicis]	[more]
AGJ74937.1	1.19e-179	97.33	RNA polymerase beta' subunit protein, partial [Oxalis stricta]	[more]

BLAST of MELO.jh101610.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	4.3e-147	99.62	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
Q8HVY4	4.0e-145	97.71	DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 S...	[more]
Q8S8Y0	2.6e-144	97.33	DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1...	[more]
Q3C1G8	2.6e-144	97.33	DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris OX=4096 GN=rpo...	[more]
Q2MIJ6	2.6e-144	97.33	DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum OX=147425 GN=...	[more]

BLAST of MELO.jh101610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5TVP8	4.79e-182	97.71	DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS...	[more]
A0A385G259	2.51e-181	96.95	DNA-directed RNA polymerase subunit OS=Ammopiptanthus mongolicus OX=126911 GN=am...	[more]
X2F6R9	9.99e-181	99.62	DNA-directed RNA polymerase subunit (Fragment) OS=Lagenaria siceraria OX=3668 GN...	[more]
A0A5Q0UU49	1.10e-180	98.47	DNA-directed RNA polymerase subunit (Fragment) OS=Hymenostegia felicis OX=162801...	[more]
M1CW95	4.68e-180	97.33	DNA-directed RNA polymerase subunit OS=Solanum tuberosum OX=4113 GN=rpoC1 PE=3 S...	[more]

BLAST of MELO.jh101610.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	7.8e-144	96.18	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	2.8e-24	28.16	RNA polymerase II large subunit	[more]
AT5G60040.1	3.6e-24	28.62	nuclear RNA polymerase C1	[more]
AT5G60040.2	3.6e-24	28.62	nuclear RNA polymerase C1	[more]
AT1G63020.1	3.4e-14	24.91	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..274 e-value: 4.6E-132 score: 454.7
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 1..108 e-value: 1.3E-28 score: 100.2
None	No IPR available	GENE3D	2.40.40.20		coord: 98..251 e-value: 6.3E-47 score: 160.7
None	No IPR available	GENE3D	1.10.40.90		coord: 139..183 e-value: 1.1E-16 score: 62.6
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 1..262
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..262
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..262
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 110..156 e-value: 1.4E-7 score: 31.9 coord: 166..250 e-value: 5.1E-27 score: 95.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101610.1.t1	MELO.jh101610.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity